HEADER MEMBRANE PROTEIN 08-DEC-16 5MM0 TITLE DOLICHYL PHOSPHATE MANNOSE SYNTHASE IN COMPLEX WITH GDP-MANNOSE AND TITLE 2 MN2+ (DONOR COMPLEX) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOLICHOL MONOPHOSPHATE MANNOSE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: N-TERMINAL HEXA-HISTDINE TAG AND TEV PROTEASE CLEAVAGE COMPND 6 SITE PRECEDES THE PROTEIN SEQUENCES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS (STRAIN ATCC 43587 / DSM SOURCE 3 3638 / JCM 8422 / VC1); SOURCE 4 ORGANISM_TAXID: 186497; SOURCE 5 GENE: PF0058; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS DOLICHOL PHOSPHATE MANNOSE SYNTHASE, ENZYME, INTEGRAL MEMBRANE KEYWDS 2 PROTEIN, PROTEIN GLYCOSYLATION, GDP-MANNOSE, MANGANESE ION, DONOR KEYWDS 3 COMPLEX, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.GANDINI,T.REICHENBACH,T.C.TAN,C.DIVNE REVDAT 2 17-JAN-24 5MM0 1 REMARK REVDAT 1 09-AUG-17 5MM0 0 JRNL AUTH R.GANDINI,T.REICHENBACH,T.C.TAN,C.DIVNE JRNL TITL STRUCTURAL BASIS FOR DOLICHYLPHOSPHATE MANNOSE BIOSYNTHESIS. JRNL REF NAT COMMUN V. 8 120 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28743912 JRNL DOI 10.1038/S41467-017-00187-2 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 28128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6009 - 5.5322 1.00 2001 159 0.1858 0.2115 REMARK 3 2 5.5322 - 4.3957 1.00 1927 143 0.1899 0.2128 REMARK 3 3 4.3957 - 3.8414 1.00 1910 143 0.2037 0.2513 REMARK 3 4 3.8414 - 3.4908 1.00 1880 146 0.2152 0.2699 REMARK 3 5 3.4908 - 3.2409 0.99 1869 149 0.2399 0.2848 REMARK 3 6 3.2409 - 3.0500 0.99 1863 138 0.2644 0.3322 REMARK 3 7 3.0500 - 2.8974 0.99 1887 136 0.2501 0.2827 REMARK 3 8 2.8974 - 2.7714 0.98 1826 144 0.2536 0.3215 REMARK 3 9 2.7714 - 2.6648 0.99 1848 139 0.2611 0.2935 REMARK 3 10 2.6648 - 2.5729 0.98 1837 141 0.2719 0.3410 REMARK 3 11 2.5729 - 2.4925 0.98 1833 147 0.3157 0.3734 REMARK 3 12 2.4925 - 2.4212 0.98 1813 141 0.3367 0.3676 REMARK 3 13 2.4212 - 2.3575 0.97 1828 134 0.3594 0.4050 REMARK 3 14 2.3575 - 2.3000 0.97 1808 138 0.3974 0.4863 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3062 REMARK 3 ANGLE : 1.378 4127 REMARK 3 CHIRALITY : 0.054 456 REMARK 3 PLANARITY : 0.006 495 REMARK 3 DIHEDRAL : 15.245 1146 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200000999. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.8600 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28132 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.93900 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5MLZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM CHLORIDE, 0.1 M REMARK 280 TRISODIUM CITRATE (PH 5.5), 37% (V/V) PENTAERYTHRITOL REMARK 280 PROPOXYLATE (5/4 PO/OH), 50 MM HEPES (PH 7.5), 150 MM NACL, 10% REMARK 280 (V/V) GLYCEROL, 0.05% LDAO, 5 MM GDP-MANNOSE, 5 MM MNCL2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.54500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.54500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.33500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.16000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.33500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.16000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.54500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.33500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.16000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.54500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.33500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.16000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 13 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 GLU A 206 O - C - N ANGL. DEV. = -11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 13 -73.76 -136.40 REMARK 500 ARG A 44 -72.29 15.23 REMARK 500 ASN A 108 1.38 -65.56 REMARK 500 LYS A 178 74.63 -110.99 REMARK 500 LEU A 209 -52.33 -127.50 REMARK 500 TRP A 284 -71.40 -137.71 REMARK 500 VAL A 348 -61.22 -126.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 45 TRP A 46 120.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 202 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 209 12.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 91 OD2 REMARK 620 2 GLN A 93 OE1 94.7 REMARK 620 3 GDD A 401 O2A 84.0 168.7 REMARK 620 4 GDD A 401 O2B 166.6 89.5 94.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 408 DBREF 5MM0 A 1 352 UNP Q8U4M3 Q8U4M3_PYRFU 1 352 SEQADV 5MM0 MET A -21 UNP Q8U4M3 INITIATING METHIONINE SEQADV 5MM0 HIS A -20 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM0 HIS A -19 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM0 HIS A -18 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM0 HIS A -17 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM0 HIS A -16 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM0 HIS A -15 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM0 SER A -14 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM0 SER A -13 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM0 GLY A -12 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM0 VAL A -11 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM0 ASP A -10 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM0 LEU A -9 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM0 GLY A -8 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM0 THR A -7 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM0 GLU A -6 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM0 ASN A -5 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM0 LEU A -4 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM0 TYR A -3 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM0 PHE A -2 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM0 GLN A -1 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM0 SER A 0 UNP Q8U4M3 EXPRESSION TAG SEQRES 1 A 374 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 374 GLY THR GLU ASN LEU TYR PHE GLN SER MET LYS VAL SER SEQRES 3 A 374 VAL ILE ILE PRO THR TYR ASN GLU ARG GLU ASN LEU GLU SEQRES 4 A 374 GLU LEU PHE SER ARG ILE ASP ASN ALA LEU GLN GLY LEU SEQRES 5 A 374 ASN TYR GLU ILE VAL VAL VAL ASP ASP ASP SER PRO ASP SEQRES 6 A 374 ARG THR TRP GLU LYS ALA GLN GLU LEU SER SER LYS TYR SEQRES 7 A 374 PRO VAL LYS VAL ILE ARG ARG THR LYS GLU LYS GLY LEU SEQRES 8 A 374 SER SER ALA VAL ILE ARG GLY PHE LYS GLU ALA SER GLY SEQRES 9 A 374 ASP VAL PHE VAL VAL MET ASP ALA ASP LEU GLN HIS PRO SEQRES 10 A 374 PRO GLU VAL ILE PRO LYS LEU ILE GLU ALA ILE LYS ASN SEQRES 11 A 374 GLY SER ASP ILE ALA ILE GLY SER ARG TYR VAL LYS GLY SEQRES 12 A 374 GLY LYS VAL GLU ASN TRP PRO PHE TYR ARG LYS LEU ILE SEQRES 13 A 374 SER LYS GLY ALA ILE MET VAL GLY ARG ILE ALA LEU PRO SEQRES 14 A 374 LYS ILE ARG ASP ILE LYS ASP PRO VAL SER GLY PHE PHE SEQRES 15 A 374 ALA LEU ARG LYS GLU VAL VAL GLU GLY VAL GLU LEU ASN SEQRES 16 A 374 PRO ILE GLY PHE LYS ILE LEU MET GLU ILE LEU ILE LYS SEQRES 17 A 374 GLY LYS TYR SER LYS VAL VAL GLU VAL PRO PHE THR PHE SEQRES 18 A 374 GLY ILE ARG ALA ARG GLY GLU SER LYS LEU LYS GLY LYS SEQRES 19 A 374 THR ILE PHE GLU TYR LEU ARG HIS ILE TYR ARG LEU MET SEQRES 20 A 374 LYS TRP GLU GLY GLU ILE ASP ARG ILE VAL LYS PHE SER SEQRES 21 A 374 ILE VAL GLY LEU SER GLY ILE LEU VAL ASN GLU GLY PHE SEQRES 22 A 374 LEU TRP LEU PHE VAL ASN LEU GLY ILE PRO LYS GLU ILE SEQRES 23 A 374 ALA VAL ILE PRO ALA VAL GLU LEU SER ILE LEU ASN ASN SEQRES 24 A 374 PHE PHE TRP ASN ASP ILE TRP THR PHE LYS ASP ILE ARG SEQRES 25 A 374 ARG GLY SER ILE PHE SER ARG LEU LEU LYS PHE HIS ILE SEQRES 26 A 374 ALA ALA LEU SER GLY ALA VAL VAL ASN PHE ILE VAL TYR SEQRES 27 A 374 TRP ILE LEU LEU PHE LEU GLY ILE HIS TYR LEU ILE ALA SEQRES 28 A 374 ASN LEU VAL GLY ILE VAL LEU SER PHE GLY VAL ARG TYR SEQRES 29 A 374 VAL ILE ASN ARG HIS VAL THR TRP ALA THR HET GDD A 401 39 HET MN A 402 1 HET CL A 403 1 HET LDA A 404 16 HET LDA A 405 16 HET LDA A 406 16 HET LDA A 407 16 HET LDA A 408 16 HETNAM GDD GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE HETNAM MN MANGANESE (II) ION HETNAM CL CHLORIDE ION HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE FORMUL 2 GDD C16 H25 N5 O16 P2 FORMUL 3 MN MN 2+ FORMUL 4 CL CL 1- FORMUL 5 LDA 5(C14 H31 N O) FORMUL 10 HOH *14(H2 O) HELIX 1 AA1 GLU A 14 LEU A 27 1 14 HELIX 2 AA2 GLU A 47 LEU A 52 1 6 HELIX 3 AA3 SER A 53 LYS A 55 5 3 HELIX 4 AA4 GLY A 68 ALA A 80 1 13 HELIX 5 AA5 PRO A 95 GLU A 97 5 3 HELIX 6 AA6 VAL A 98 ASN A 108 1 11 HELIX 7 AA7 PRO A 128 LEU A 146 1 19 HELIX 8 AA8 PRO A 147 ARG A 150 5 4 HELIX 9 AA9 GLU A 165 GLU A 168 5 4 HELIX 10 AB1 LYS A 178 GLY A 187 1 10 HELIX 11 AB2 LYS A 212 GLU A 228 1 17 HELIX 12 AB3 GLY A 229 ASN A 257 1 29 HELIX 13 AB4 PRO A 261 TRP A 284 1 24 HELIX 14 AB5 PHE A 286 ARG A 290 5 5 HELIX 15 AB6 SER A 293 LEU A 322 1 30 HELIX 16 AB7 HIS A 325 VAL A 348 1 24 SHEET 1 AA1 7 VAL A 58 ARG A 62 0 SHEET 2 AA1 7 TYR A 32 ASP A 38 1 N ILE A 34 O LYS A 59 SHEET 3 AA1 7 VAL A 3 THR A 9 1 N VAL A 5 O VAL A 35 SHEET 4 AA1 7 VAL A 84 VAL A 87 1 O VAL A 86 N ILE A 6 SHEET 5 AA1 7 PHE A 160 ARG A 163 -1 O PHE A 160 N VAL A 87 SHEET 6 AA1 7 ILE A 112 SER A 116 -1 N ALA A 113 O ALA A 161 SHEET 7 AA1 7 VAL A 192 PRO A 196 1 O VAL A 195 N ILE A 114 SHEET 1 AA2 2 LYS A 123 VAL A 124 0 SHEET 2 AA2 2 THR A 198 PHE A 199 1 O PHE A 199 N LYS A 123 LINK OD2 ASP A 91 MN MN A 402 1555 1555 2.07 LINK OE1 GLN A 93 MN MN A 402 1555 1555 1.96 LINK O2A GDD A 401 MN MN A 402 1555 1555 1.96 LINK O2B GDD A 401 MN MN A 402 1555 1555 2.05 CISPEP 1 LYS A 210 GLY A 211 0 -12.73 SITE 1 AC1 21 PRO A 8 THR A 9 TYR A 10 GLU A 12 SITE 2 AC1 21 VAL A 37 ASP A 39 LEU A 69 ALA A 72 SITE 3 AC1 21 ASP A 89 ALA A 90 ASP A 91 GLN A 93 SITE 4 AC1 21 HIS A 94 ARG A 117 VAL A 156 GLY A 158 SITE 5 AC1 21 LYS A 178 ARG A 202 SER A 207 LYS A 208 SITE 6 AC1 21 MN A 402 SITE 1 AC2 4 ASP A 91 GLN A 93 ARG A 202 GDD A 401 SITE 1 AC3 3 ASN A 277 PHE A 301 ARG A 341 SITE 1 AC4 4 SER A 243 TRP A 280 TRP A 284 LDA A 407 SITE 1 AC5 6 LEU A 242 ILE A 245 GLU A 249 GLY A 250 SITE 2 AC5 6 PHE A 251 TRP A 253 SITE 1 AC6 2 ARG A 150 HIS A 347 SITE 1 AC7 3 PHE A 279 TRP A 284 LDA A 404 SITE 1 AC8 3 VAL A 270 SER A 273 LEU A 306 CRYST1 90.670 146.320 95.090 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011029 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006834 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010516 0.00000