HEADER OXIDOREDUCTASE 14-DEC-16 5MOF TITLE ETHYLENE FORMING ENZYME FROM PSEUDOMONAS SYRINGAE PV. PHASEOLICOLA - TITLE 2 I222 CRYSTAL FORM IN COMPLEX WITH MANGANESE AND 2-OXOGLUTARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-OXOGLUTARATE-DEPENDENT ETHYLENE/SUCCINATE-FORMING ENZYME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ETHYLENE-FORMING ENZYME,2-OXOGLUTARATE DIOXYGENASE COMPND 5 (ETHYLENE-FORMING),2-OXOGLUTARATE/L-ARGININE COMPND 6 MONOOXYGENASE/DECARBOXYLASE (SUCCINATE-FORMING); COMPND 7 EC: 1.13.12.19,1.14.11.34; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SAVASTANOI PV. PHASEOLICOLA; SOURCE 3 ORGANISM_TAXID: 319; SOURCE 4 GENE: EFE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS 2-OXOGLUTARATE AND FERROUS IRON DEPENDENT OXYGENASE, ETHYLENE KEYWDS 2 FORMING, DOUBLE STRANDED BETA HELIX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.MCDONOUGH,Z.ZHANG,C.J.SCHOFIELD REVDAT 4 17-JAN-24 5MOF 1 LINK ATOM REVDAT 3 10-MAY-17 5MOF 1 JRNL REVDAT 2 03-MAY-17 5MOF 1 JRNL REVDAT 1 19-APR-17 5MOF 0 JRNL AUTH Z.ZHANG,T.J.SMART,H.CHOI,F.HARDY,C.T.LOHANS,M.I.ABBOUD, JRNL AUTH 2 M.S.W.RICHARDSON,R.S.PATON,M.A.MCDONOUGH,C.J.SCHOFIELD JRNL TITL STRUCTURAL AND STEREOELECTRONIC INSIGHTS INTO JRNL TITL 2 OXYGENASE-CATALYZED FORMATION OF ETHYLENE FROM JRNL TITL 3 2-OXOGLUTARATE. JRNL REF PROC. NATL. ACAD. SCI. V. 114 4667 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28420789 JRNL DOI 10.1073/PNAS.1617760114 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 67710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 3369 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 69.3557 - 4.1823 1.00 2841 175 0.1612 0.1511 REMARK 3 2 4.1823 - 3.3196 1.00 2757 127 0.1269 0.1473 REMARK 3 3 3.3196 - 2.9000 1.00 2743 151 0.1461 0.1791 REMARK 3 4 2.9000 - 2.6348 1.00 2674 162 0.1429 0.1505 REMARK 3 5 2.6348 - 2.4459 1.00 2748 116 0.1353 0.1480 REMARK 3 6 2.4459 - 2.3017 1.00 2702 133 0.1311 0.1673 REMARK 3 7 2.3017 - 2.1864 1.00 2696 133 0.1387 0.1566 REMARK 3 8 2.1864 - 2.0913 1.00 2683 137 0.1415 0.1728 REMARK 3 9 2.0913 - 2.0108 1.00 2680 153 0.1496 0.1815 REMARK 3 10 2.0108 - 1.9414 1.00 2667 134 0.1635 0.1776 REMARK 3 11 1.9414 - 1.8807 1.00 2690 124 0.1670 0.1995 REMARK 3 12 1.8807 - 1.8269 1.00 2675 153 0.1724 0.1668 REMARK 3 13 1.8269 - 1.7788 1.00 2623 134 0.1913 0.2175 REMARK 3 14 1.7788 - 1.7354 1.00 2713 132 0.2031 0.2310 REMARK 3 15 1.7354 - 1.6959 1.00 2653 149 0.2172 0.2702 REMARK 3 16 1.6959 - 1.6598 1.00 2626 160 0.2327 0.2555 REMARK 3 17 1.6598 - 1.6266 1.00 2663 139 0.2439 0.2418 REMARK 3 18 1.6266 - 1.5959 1.00 2648 142 0.2509 0.2732 REMARK 3 19 1.5959 - 1.5674 1.00 2656 135 0.2708 0.3067 REMARK 3 20 1.5674 - 1.5409 0.99 2666 121 0.2789 0.2963 REMARK 3 21 1.5409 - 1.5160 0.99 2676 120 0.2915 0.3050 REMARK 3 22 1.5160 - 1.4927 0.99 2634 164 0.3109 0.3163 REMARK 3 23 1.4927 - 1.4707 0.99 2612 143 0.3220 0.3149 REMARK 3 24 1.4707 - 1.4500 0.99 2615 132 0.3296 0.3651 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2969 REMARK 3 ANGLE : 0.727 4051 REMARK 3 CHIRALITY : 0.064 426 REMARK 3 PLANARITY : 0.005 536 REMARK 3 DIHEDRAL : 13.138 1113 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3646 48.4484 27.5565 REMARK 3 T TENSOR REMARK 3 T11: 0.1002 T22: 0.0836 REMARK 3 T33: 0.0757 T12: 0.0204 REMARK 3 T13: 0.0047 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 3.2008 L22: 4.2507 REMARK 3 L33: 1.2714 L12: 0.1266 REMARK 3 L13: 0.1837 L23: -0.4598 REMARK 3 S TENSOR REMARK 3 S11: -0.0589 S12: -0.1472 S13: 0.1684 REMARK 3 S21: 0.1774 S22: 0.0429 S23: 0.0890 REMARK 3 S31: -0.1598 S32: -0.1108 S33: 0.0106 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6781 20.3075 19.3180 REMARK 3 T TENSOR REMARK 3 T11: 0.0655 T22: 0.1061 REMARK 3 T33: 0.1152 T12: -0.0151 REMARK 3 T13: -0.0136 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 0.1165 L22: 1.9055 REMARK 3 L33: 1.8552 L12: 0.1846 REMARK 3 L13: 0.3541 L23: 0.2252 REMARK 3 S TENSOR REMARK 3 S11: 0.0175 S12: -0.0499 S13: -0.0722 REMARK 3 S21: 0.0466 S22: 0.0119 S23: 0.0010 REMARK 3 S31: 0.1754 S32: 0.0272 S33: -0.0033 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8031 33.8511 12.1566 REMARK 3 T TENSOR REMARK 3 T11: 0.0800 T22: 0.0856 REMARK 3 T33: 0.0817 T12: -0.0026 REMARK 3 T13: -0.0146 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.3232 L22: 1.0181 REMARK 3 L33: 0.3745 L12: 0.2266 REMARK 3 L13: 0.0263 L23: 0.1857 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: 0.0262 S13: 0.0405 REMARK 3 S21: -0.0660 S22: 0.0149 S23: 0.0300 REMARK 3 S31: -0.0372 S32: -0.0188 S33: 0.0206 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7175 32.4824 25.1900 REMARK 3 T TENSOR REMARK 3 T11: 0.0630 T22: 0.0792 REMARK 3 T33: 0.0859 T12: 0.0059 REMARK 3 T13: 0.0036 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.4550 L22: 1.0045 REMARK 3 L33: 0.9435 L12: 0.0271 REMARK 3 L13: 0.2764 L23: -0.3906 REMARK 3 S TENSOR REMARK 3 S11: -0.0222 S12: -0.0089 S13: 0.0239 REMARK 3 S21: -0.0013 S22: 0.0121 S23: -0.0588 REMARK 3 S31: 0.0202 S32: 0.0610 S33: 0.0158 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 294 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7520 36.8714 8.8594 REMARK 3 T TENSOR REMARK 3 T11: 0.1039 T22: 0.1671 REMARK 3 T33: 0.1500 T12: -0.0193 REMARK 3 T13: -0.0100 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 2.5265 L22: 6.4238 REMARK 3 L33: 2.4800 L12: 2.1215 REMARK 3 L13: 0.4128 L23: 2.7499 REMARK 3 S TENSOR REMARK 3 S11: 0.0480 S12: -0.1093 S13: 0.0022 REMARK 3 S21: -0.0689 S22: 0.0011 S23: -0.5956 REMARK 3 S31: -0.1421 S32: 0.2369 S33: -0.0205 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 345 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7659 26.9172 -1.3716 REMARK 3 T TENSOR REMARK 3 T11: 0.1263 T22: 0.1929 REMARK 3 T33: 0.1226 T12: 0.0070 REMARK 3 T13: 0.0051 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 3.1949 L22: 5.0825 REMARK 3 L33: 3.9077 L12: 0.6724 REMARK 3 L13: -0.9149 L23: -1.2745 REMARK 3 S TENSOR REMARK 3 S11: -0.0517 S12: 0.0166 S13: -0.0160 REMARK 3 S21: -0.1897 S22: -0.2442 S23: -0.4910 REMARK 3 S31: 0.0487 S32: 0.5373 S33: 0.2593 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MOF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002775. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97960 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67866 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 69.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 1.52100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5LUN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17-20% PEG 3350, 100MM BIS-TRIS REMARK 280 PHOSPHATE, 100MM SODIUM POTASSIUM PHOSPHATE, 3MM MANGANESE REMARK 280 CHLORIDE, 10MM 2-OXOGLUTARATE, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.74200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.92500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.04700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.74200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.92500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.04700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.74200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.92500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.04700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.74200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.92500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.04700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 949 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 ASN A -7 REMARK 465 HIS A -6 REMARK 465 LYS A -5 REMARK 465 VAL A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 ARG A 346 REMARK 465 ALA A 347 REMARK 465 THR A 348 REMARK 465 GLY A 349 REMARK 465 SER A 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 83 CD OE1 OE2 REMARK 470 GLN A 107 CD OE1 NE2 REMARK 470 LYS A 128 CE NZ REMARK 470 GLU A 213 CD OE1 OE2 REMARK 470 LYS A 216 CD CE NZ REMARK 470 GLU A 297 CD OE1 OE2 REMARK 470 ASN A 301 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 790 O HOH A 890 2.07 REMARK 500 O HOH A 577 O HOH A 908 2.15 REMARK 500 O HOH A 622 O HOH A 896 2.16 REMARK 500 NE ARG A 171 O1 AKG A 404 2.16 REMARK 500 O HOH A 819 O HOH A 905 2.18 REMARK 500 O PRO A 298 O HOH A 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 115 -1.11 81.17 REMARK 500 ASP A 201 -165.94 -79.71 REMARK 500 GLU A 225 48.53 -147.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 AKG A 405 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 189 NE2 REMARK 620 2 ASP A 191 OD1 93.6 REMARK 620 3 HIS A 268 NE2 86.2 92.8 REMARK 620 4 AKG A 404 O2 89.6 94.2 172.0 REMARK 620 5 AKG A 404 O5 89.1 175.6 90.8 82.3 REMARK 620 6 HOH A 518 O 174.0 91.9 91.3 92.2 85.5 REMARK 620 7 HOH A 715 O 105.5 80.0 166.5 20.8 96.0 77.7 REMARK 620 8 HOH A 841 O 95.2 164.1 100.9 72.7 11.5 79.9 85.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 317 SG REMARK 620 2 CYS A 317 SG 53.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 DBREF 5MOF A 3 350 UNP P32021 EFE_PSESH 3 350 SEQADV 5MOF MET A -8 UNP P32021 INITIATING METHIONINE SEQADV 5MOF ASN A -7 UNP P32021 EXPRESSION TAG SEQADV 5MOF HIS A -6 UNP P32021 EXPRESSION TAG SEQADV 5MOF LYS A -5 UNP P32021 EXPRESSION TAG SEQADV 5MOF VAL A -4 UNP P32021 EXPRESSION TAG SEQADV 5MOF HIS A -3 UNP P32021 EXPRESSION TAG SEQADV 5MOF HIS A -2 UNP P32021 EXPRESSION TAG SEQADV 5MOF HIS A -1 UNP P32021 EXPRESSION TAG SEQADV 5MOF HIS A 0 UNP P32021 EXPRESSION TAG SEQADV 5MOF HIS A 1 UNP P32021 EXPRESSION TAG SEQADV 5MOF HIS A 2 UNP P32021 EXPRESSION TAG SEQRES 1 A 359 MET ASN HIS LYS VAL HIS HIS HIS HIS HIS HIS ASN LEU SEQRES 2 A 359 GLN THR PHE GLU LEU PRO THR GLU VAL THR GLY CYS ALA SEQRES 3 A 359 ALA ASP ILE SER LEU GLY ARG ALA LEU ILE GLN ALA TRP SEQRES 4 A 359 GLN LYS ASP GLY ILE PHE GLN ILE LYS THR ASP SER GLU SEQRES 5 A 359 GLN ASP ARG LYS THR GLN GLU ALA MET ALA ALA SER LYS SEQRES 6 A 359 GLN PHE CYS LYS GLU PRO LEU THR PHE LYS SER SER CYS SEQRES 7 A 359 VAL SER ASP LEU THR TYR SER GLY TYR VAL ALA SER GLY SEQRES 8 A 359 GLU GLU VAL THR ALA GLY LYS PRO ASP PHE PRO GLU ILE SEQRES 9 A 359 PHE THR VAL CYS LYS ASP LEU SER VAL GLY ASP GLN ARG SEQRES 10 A 359 VAL LYS ALA GLY TRP PRO CYS HIS GLY PRO VAL PRO TRP SEQRES 11 A 359 PRO ASN ASN THR TYR GLN LYS SER MET LYS THR PHE MET SEQRES 12 A 359 GLU GLU LEU GLY LEU ALA GLY GLU ARG LEU LEU LYS LEU SEQRES 13 A 359 THR ALA LEU GLY PHE GLU LEU PRO ILE ASN THR PHE THR SEQRES 14 A 359 ASP LEU THR ARG ASP GLY TRP HIS HIS MET ARG VAL LEU SEQRES 15 A 359 ARG PHE PRO PRO GLN THR SER THR LEU SER ARG GLY ILE SEQRES 16 A 359 GLY ALA HIS THR ASP TYR GLY LEU LEU VAL ILE ALA ALA SEQRES 17 A 359 GLN ASP ASP VAL GLY GLY LEU TYR ILE ARG PRO PRO VAL SEQRES 18 A 359 GLU GLY GLU LYS ARG ASN ARG ASN TRP LEU PRO GLY GLU SEQRES 19 A 359 SER SER ALA GLY MET PHE GLU HIS ASP GLU PRO TRP THR SEQRES 20 A 359 PHE VAL THR PRO THR PRO GLY VAL TRP THR VAL PHE PRO SEQRES 21 A 359 GLY ASP ILE LEU GLN PHE MET THR GLY GLY GLN LEU LEU SEQRES 22 A 359 SER THR PRO HIS LYS VAL LYS LEU ASN THR ARG GLU ARG SEQRES 23 A 359 PHE ALA CYS ALA TYR PHE HIS GLU PRO ASN PHE GLU ALA SEQRES 24 A 359 SER ALA TYR PRO LEU PHE GLU PRO SER ALA ASN GLU ARG SEQRES 25 A 359 ILE HIS TYR GLY GLU HIS PHE THR ASN MET PHE MET ARG SEQRES 26 A 359 CYS TYR PRO ASP ARG ILE THR THR GLN ARG ILE ASN LYS SEQRES 27 A 359 GLU ASN ARG LEU ALA HIS LEU GLU ASP LEU LYS LYS TYR SEQRES 28 A 359 SER ASP THR ARG ALA THR GLY SER HET MN A 401 1 HET MN A 402 1 HET CL A 403 1 HET AKG A 404 10 HET AKG A 405 6 HET GOL A 406 6 HET GOL A 407 6 HETNAM MN MANGANESE (II) ION HETNAM CL CHLORIDE ION HETNAM AKG 2-OXOGLUTARIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MN 2(MN 2+) FORMUL 4 CL CL 1- FORMUL 5 AKG 2(C5 H6 O5) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *467(H2 O) HELIX 1 AA1 CYS A 16 GLY A 34 1 19 HELIX 2 AA2 ASP A 41 LYS A 60 1 20 HELIX 3 AA3 PRO A 62 SER A 68 1 7 HELIX 4 AA4 ASP A 106 ALA A 111 1 6 HELIX 5 AA5 ASN A 123 PHE A 152 1 30 HELIX 6 AA6 GLY A 252 THR A 259 1 8 HELIX 7 AA7 TYR A 306 TYR A 318 1 13 HELIX 8 AA8 ARG A 321 ASN A 331 1 11 HELIX 9 AA9 ARG A 332 LYS A 340 1 9 SHEET 1 AA1 8 THR A 6 PHE A 7 0 SHEET 2 AA1 8 PHE A 36 LYS A 39 1 O GLN A 37 N PHE A 7 SHEET 3 AA1 8 VAL A 246 PRO A 251 -1 O TRP A 247 N ILE A 38 SHEET 4 AA1 8 LEU A 195 GLN A 200 -1 N ALA A 198 O THR A 248 SHEET 5 AA1 8 ARG A 277 HIS A 284 -1 O TYR A 282 N ILE A 197 SHEET 6 AA1 8 HIS A 169 PHE A 175 -1 N HIS A 169 O PHE A 283 SHEET 7 AA1 8 GLU A 94 VAL A 98 -1 N VAL A 98 O MET A 170 SHEET 8 AA1 8 GLY A 77 VAL A 79 -1 N VAL A 79 O ILE A 95 SHEET 1 AA2 2 VAL A 85 THR A 86 0 SHEET 2 AA2 2 LYS A 89 PRO A 90 -1 O LYS A 89 N THR A 86 SHEET 1 AA3 4 ARG A 184 HIS A 189 0 SHEET 2 AA3 4 HIS A 268 LYS A 271 -1 O HIS A 268 N HIS A 189 SHEET 3 AA3 4 LEU A 206 ILE A 208 -1 N TYR A 207 O LYS A 269 SHEET 4 AA3 4 THR A 238 PHE A 239 -1 O THR A 238 N ILE A 208 SHEET 1 AA4 2 SER A 291 ALA A 292 0 SHEET 2 AA4 2 ILE A 304 HIS A 305 -1 O ILE A 304 N ALA A 292 LINK NE2 HIS A 189 MN MN A 401 1555 1555 2.23 LINK OD1 ASP A 191 MN MN A 401 1555 1555 2.20 LINK NE2 HIS A 268 MN MN A 401 1555 1555 2.05 LINK SG ACYS A 317 MN MN A 402 1555 1555 2.42 LINK SG BCYS A 317 MN MN A 402 1555 1555 2.65 LINK MN MN A 401 O2 AAKG A 404 1555 1555 2.04 LINK MN MN A 401 O5 AAKG A 404 1555 1555 2.14 LINK MN MN A 401 O HOH A 518 1555 1555 2.23 LINK MN MN A 401 O BHOH A 715 1555 1555 2.21 LINK MN MN A 401 O BHOH A 841 1555 1555 2.00 CISPEP 1 GLU A 235 PRO A 236 0 1.54 SITE 1 AC1 7 HIS A 189 ASP A 191 HIS A 268 AKG A 404 SITE 2 AC1 7 HOH A 518 HOH A 715 HOH A 841 SITE 1 AC2 1 CYS A 317 SITE 1 AC3 5 ARG A 277 ALA A 279 AKG A 404 HOH A 510 SITE 2 AC3 5 HOH A 846 SITE 1 AC4 19 ARG A 171 LEU A 173 PHE A 175 HIS A 189 SITE 2 AC4 19 ASP A 191 HIS A 268 VAL A 270 ARG A 277 SITE 3 AC4 19 ALA A 279 MN A 401 CL A 403 HOH A 510 SITE 4 AC4 19 HOH A 517 HOH A 518 HOH A 715 HOH A 841 SITE 5 AC4 19 HOH A 846 HOH A 863 HOH A 966 SITE 1 AC5 6 LEU A 182 SER A 183 ARG A 184 HOH A 690 SITE 2 AC5 6 HOH A 701 HOH A 726 SITE 1 AC6 11 GLU A 50 ALA A 54 GLN A 57 THR A 125 SITE 2 AC6 11 SER A 129 ALA A 228 GLY A 229 MET A 230 SITE 3 AC6 11 HOH A 638 HOH A 669 HOH A 903 SITE 1 AC7 10 ALA A 54 GLN A 57 PHE A 58 GLU A 61 SITE 2 AC7 10 ASN A 123 MET A 230 PHE A 231 HOH A 669 SITE 3 AC7 10 HOH A 714 HOH A 747 CRYST1 79.484 97.850 98.094 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012581 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010194 0.00000