HEADER TRANSFERASE 18-DEC-16 5MPR TITLE SINGLE AMINO ACID VARIANT OF HUMAN MITOCHONDRIAL BRANCHED CHAIN AMINO TITLE 2 ACID AMINOTRANSFERASE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BCAT(M),PLACENTAL PROTEIN 18,PP18; COMPND 5 EC: 2.6.1.42; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCAT2, BCATM, BCT2, ECA40; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINOTRANSFERASE TRANSAMINASE PLP MUTATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.HAKANSSON,B.WALSE,C.NILSSON,L.C.ANDERSON REVDAT 3 16-OCT-19 5MPR 1 REMARK REVDAT 2 13-DEC-17 5MPR 1 JRNL REVDAT 1 19-JUL-17 5MPR 0 JRNL AUTH L.C.ANDERSON,M.HAKANSSON,B.WALSE,C.L.NILSSON JRNL TITL INTACT PROTEIN ANALYSIS AT 21 TESLA AND X-RAY JRNL TITL 2 CRYSTALLOGRAPHY DEFINE STRUCTURAL DIFFERENCES IN SINGLE JRNL TITL 3 AMINO ACID VARIANTS OF HUMAN MITOCHONDRIAL BRANCHED-CHAIN JRNL TITL 4 AMINO ACID AMINOTRANSFERASE 2 (BCAT2). JRNL REF J. AM. SOC. MASS SPECTROM. V. 28 1796 2017 JRNL REFN ISSN 1879-1123 JRNL PMID 28681360 JRNL DOI 10.1007/S13361-017-1705-0 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 54393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2912 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3806 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 196 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2901 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : -0.65000 REMARK 3 B12 (A**2) : 0.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.072 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.771 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3123 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3036 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4250 ; 1.816 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6984 ; 0.875 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 387 ; 5.926 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;31.820 ;23.066 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 533 ;13.275 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;16.156 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 458 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3516 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 736 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1503 ; 4.513 ; 2.411 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1502 ; 4.497 ; 2.410 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1890 ; 5.298 ; 3.631 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1891 ; 5.305 ; 3.632 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1615 ; 6.817 ; 3.034 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1615 ; 6.816 ; 3.035 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2350 ; 8.025 ; 4.310 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3544 ; 7.228 ;21.148 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3545 ; 7.228 ;21.152 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6152 ; 6.298 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 79 ;29.486 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6229 ;17.965 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MPR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002814. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57390 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUMFLUORIDE, 0.1 M BIS TRIS REMARK 280 PROPANE PH 6.5, 20% W/V POLYETHYLENE GLYCOL 3350, EVAPORATION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.29733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.14867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.14867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.29733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 145.54769 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 246.04067 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 25 REMARK 465 GLU A 26 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 590 O HOH A 692 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 40 CG - SD - CE ANGL. DEV. = -14.3 DEGREES REMARK 500 ARG A 304 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 149 35.09 -148.72 REMARK 500 GLN A 316 -63.84 80.41 REMARK 500 GLN A 316 -73.14 80.41 REMARK 500 PRO A 333 31.36 -87.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 DBREF 5MPR A 1 365 UNP O15382 BCAT2_HUMAN 28 392 SEQADV 5MPR GLY A 0 UNP O15382 EXPRESSION TAG SEQADV 5MPR ARG A 159 UNP O15382 THR 186 ENGINEERED MUTATION SEQRES 1 A 366 GLY ALA SER SER SER PHE LYS ALA ALA ASP LEU GLN LEU SEQRES 2 A 366 GLU MET THR GLN LYS PRO HIS LYS LYS PRO GLY PRO GLY SEQRES 3 A 366 GLU PRO LEU VAL PHE GLY LYS THR PHE THR ASP HIS MET SEQRES 4 A 366 LEU MET VAL GLU TRP ASN ASP LYS GLY TRP GLY GLN PRO SEQRES 5 A 366 ARG ILE GLN PRO PHE GLN ASN LEU THR LEU HIS PRO ALA SEQRES 6 A 366 SER SER SER LEU HIS TYR SER LEU GLN LEU PHE GLU GLY SEQRES 7 A 366 MET LYS ALA PHE LYS GLY LYS ASP GLN GLN VAL ARG LEU SEQRES 8 A 366 PHE ARG PRO TRP LEU ASN MET ASP ARG MET LEU ARG SER SEQRES 9 A 366 ALA MET ARG LEU CYS LEU PRO SER PHE ASP LYS LEU GLU SEQRES 10 A 366 LEU LEU GLU CYS ILE ARG ARG LEU ILE GLU VAL ASP LYS SEQRES 11 A 366 ASP TRP VAL PRO ASP ALA ALA GLY THR SER LEU TYR VAL SEQRES 12 A 366 ARG PRO VAL LEU ILE GLY ASN GLU PRO SER LEU GLY VAL SEQRES 13 A 366 SER GLN PRO ARG ARG ALA LEU LEU PHE VAL ILE LEU CYS SEQRES 14 A 366 PRO VAL GLY ALA TYR PHE PRO GLY GLY SER VAL THR PRO SEQRES 15 A 366 VAL SER LEU LEU ALA ASP PRO ALA PHE ILE ARG ALA TRP SEQRES 16 A 366 VAL GLY GLY VAL GLY ASN TYR LYS LEU GLY GLY ASN TYR SEQRES 17 A 366 GLY PRO THR VAL LEU VAL GLN GLN GLU ALA LEU LYS ARG SEQRES 18 A 366 GLY CYS GLU GLN VAL LEU TRP LEU TYR GLY PRO ASP HIS SEQRES 19 A 366 GLN LEU THR GLU VAL GLY THR MET ASN ILE PHE VAL TYR SEQRES 20 A 366 TRP THR HIS GLU ASP GLY VAL LEU GLU LEU VAL THR PRO SEQRES 21 A 366 PRO LEU ASN GLY VAL ILE LEU PRO GLY VAL VAL ARG GLN SEQRES 22 A 366 SER LEU LEU ASP MET ALA GLN THR TRP GLY GLU PHE ARG SEQRES 23 A 366 VAL VAL GLU ARG THR ILE THR MET LYS GLN LEU LEU ARG SEQRES 24 A 366 ALA LEU GLU GLU GLY ARG VAL ARG GLU VAL PHE GLY SER SEQRES 25 A 366 GLY THR ALA CYS GLN VAL CYS PRO VAL HIS ARG ILE LEU SEQRES 26 A 366 TYR LYS ASP ARG ASN LEU HIS ILE PRO THR MET GLU ASN SEQRES 27 A 366 GLY PRO GLU LEU ILE LEU ARG PHE GLN LYS GLU LEU LYS SEQRES 28 A 366 GLU ILE GLN TYR GLY ILE ARG ALA HIS GLU TRP MET PHE SEQRES 29 A 366 PRO VAL HET PLP A 401 15 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PLP C8 H10 N O6 P FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 HOH *236(H2 O) HELIX 1 AA1 LYS A 6 LEU A 10 5 5 HELIX 2 AA2 SER A 65 TYR A 70 1 6 HELIX 3 AA3 ARG A 92 LEU A 107 1 16 HELIX 4 AA4 ASP A 113 ASP A 128 1 16 HELIX 5 AA5 LYS A 129 VAL A 132 5 4 HELIX 6 AA6 LEU A 203 PRO A 209 5 7 HELIX 7 AA7 THR A 210 ARG A 220 1 11 HELIX 8 AA8 GLY A 268 GLY A 282 1 15 HELIX 9 AA9 THR A 292 GLU A 302 1 11 HELIX 10 AB1 PRO A 333 GLY A 338 5 6 HELIX 11 AB2 PRO A 339 TYR A 354 1 16 SHEET 1 AA1 6 GLN A 11 LEU A 12 0 SHEET 2 AA1 6 ARG A 52 PRO A 55 1 O ILE A 53 N GLN A 11 SHEET 3 AA1 6 HIS A 37 ASN A 44 -1 N MET A 38 O GLN A 54 SHEET 4 AA1 6 ALA A 161 VAL A 170 -1 O LEU A 163 N VAL A 41 SHEET 5 AA1 6 SER A 139 GLY A 148 -1 N TYR A 141 O CYS A 168 SHEET 6 AA1 6 GLN A 73 PHE A 75 -1 N LEU A 74 O LEU A 146 SHEET 1 AA2 7 GLY A 47 TRP A 48 0 SHEET 2 AA2 7 HIS A 37 ASN A 44 -1 N ASN A 44 O GLY A 47 SHEET 3 AA2 7 ALA A 161 VAL A 170 -1 O LEU A 163 N VAL A 41 SHEET 4 AA2 7 SER A 139 GLY A 148 -1 N TYR A 141 O CYS A 168 SHEET 5 AA2 7 MET A 78 LYS A 82 -1 N MET A 78 O VAL A 142 SHEET 6 AA2 7 VAL A 88 PHE A 91 -1 O ARG A 89 N PHE A 81 SHEET 7 AA2 7 MET A 362 PRO A 364 -1 O PHE A 363 N LEU A 90 SHEET 1 AA3 8 ARG A 285 GLU A 288 0 SHEET 2 AA3 8 LEU A 254 THR A 258 1 N LEU A 256 O VAL A 287 SHEET 3 AA3 8 MET A 241 THR A 248 -1 N TRP A 247 O GLU A 255 SHEET 4 AA3 8 GLN A 234 VAL A 238 -1 N VAL A 238 O MET A 241 SHEET 5 AA3 8 GLN A 224 TYR A 229 -1 N TYR A 229 O GLN A 234 SHEET 6 AA3 8 VAL A 182 ALA A 186 1 N LEU A 185 O LEU A 226 SHEET 7 AA3 8 GLN A 316 TYR A 325 1 O LEU A 324 N LEU A 184 SHEET 8 AA3 8 ARG A 328 HIS A 331 -1 O LEU A 330 N ILE A 323 SHEET 1 AA4 6 ARG A 285 GLU A 288 0 SHEET 2 AA4 6 LEU A 254 THR A 258 1 N LEU A 256 O VAL A 287 SHEET 3 AA4 6 MET A 241 THR A 248 -1 N TRP A 247 O GLU A 255 SHEET 4 AA4 6 VAL A 305 GLY A 312 -1 O GLU A 307 N TYR A 246 SHEET 5 AA4 6 GLN A 316 TYR A 325 -1 O VAL A 320 N VAL A 308 SHEET 6 AA4 6 ARG A 328 HIS A 331 -1 O LEU A 330 N ILE A 323 LINK NZ LYS A 202 C4A PLP A 401 1555 1555 1.29 CISPEP 1 GLY A 338 PRO A 339 0 -1.13 SITE 1 AC1 17 ARG A 99 ARG A 192 LYS A 202 TYR A 207 SITE 2 AC1 17 GLU A 237 THR A 240 ASN A 242 LEU A 266 SITE 3 AC1 17 GLY A 268 VAL A 269 VAL A 270 GLY A 312 SITE 4 AC1 17 THR A 313 EDO A 405 HOH A 541 HOH A 581 SITE 5 AC1 17 HOH A 588 SITE 1 AC2 5 TYR A 246 ARG A 306 LEU A 341 ARG A 344 SITE 2 AC2 5 HOH A 503 SITE 1 AC3 4 ASP A 276 MET A 277 THR A 280 HIS A 359 SITE 1 AC4 4 GLU A 42 LEU A 59 THR A 60 LEU A 162 SITE 1 AC5 4 TYR A 70 ARG A 143 LYS A 202 PLP A 401 SITE 1 AC6 6 THR A 15 LYS A 17 HIS A 19 ASP A 36 SITE 2 AC6 6 PHE A 56 HOH A 620 CRYST1 84.032 84.032 105.446 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011900 0.006871 0.000000 0.00000 SCALE2 0.000000 0.013741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009484 0.00000