HEADER REPLICATION 20-DEC-16 5MQI TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF HUMAN TIMELESS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TIMELESS HOMOLOG,PROTEIN TIMELESS HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HTIM,HTIM; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE RECOMBINANT VERSION OF THE N-TERMINAL DOMAIN OF COMPND 7 HUMAN TIMELESS USED FOR X-RAY CRYSTAL STRUCTURE DETERMINATION CARRIED COMPND 8 AN INTERNAL DELETION OF AMINO ACIDS 239 TO 330, WHICH WERE REPLACED COMPND 9 WITH THE ARTIFICIAL LINKER SEQUENCE GSTGST. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TIMELESS, TIM, TIM1, TIMELESS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA REPLICATION, GENOMIC STABILITY, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR S.HOLZER,M.L.KILKENNY,L.PELLEGRINI REVDAT 5 08-MAY-24 5MQI 1 REMARK REVDAT 4 31-MAY-17 5MQI 1 JRNL REVDAT 3 05-APR-17 5MQI 1 JRNL REVDAT 2 15-MAR-17 5MQI 1 JRNL REVDAT 1 08-MAR-17 5MQI 0 JRNL AUTH S.HOLZER,G.DEGLIESPOSTI,M.L.KILKENNY,S.L.MASLEN, JRNL AUTH 2 D.MATAK-VINKOVIC,M.SKEHEL,L.PELLEGRINI JRNL TITL CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF HUMAN TIMELESS JRNL TITL 2 AND ITS INTERACTION WITH TIPIN. JRNL REF NUCLEIC ACIDS RES. V. 45 5555 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 28334766 JRNL DOI 10.1093/NAR/GKX139 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.070 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 3 NUMBER OF REFLECTIONS : 36568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.260 REMARK 3 FREE R VALUE TEST SET COUNT : 3474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.4685 - 5.3976 0.86 2448 112 0.1680 0.2108 REMARK 3 2 5.3976 - 4.2854 0.87 2456 137 0.1328 0.1242 REMARK 3 3 4.2854 - 3.7441 0.85 2416 99 0.1448 0.1789 REMARK 3 4 3.7441 - 3.4019 0.86 2418 164 0.1563 0.1606 REMARK 3 5 3.4019 - 3.1581 0.87 2451 160 0.1844 0.2253 REMARK 3 6 3.1581 - 2.9720 0.88 2488 128 0.1842 0.2434 REMARK 3 7 2.9720 - 2.8232 0.89 2502 157 0.1734 0.2130 REMARK 3 8 2.8232 - 2.7003 0.86 2409 122 0.1674 0.1825 REMARK 3 9 2.7003 - 2.5963 0.89 2507 117 0.1624 0.1879 REMARK 3 10 2.5963 - 2.5068 0.90 2552 169 0.1745 0.2161 REMARK 3 11 2.5068 - 2.4284 0.89 2552 116 0.1693 0.2041 REMARK 3 12 2.4284 - 2.3590 0.89 2484 130 0.1680 0.2035 REMARK 3 13 2.3590 - 2.2969 0.90 2595 147 0.1733 0.2099 REMARK 3 14 2.2969 - 2.2408 0.91 2524 132 0.1708 0.1999 REMARK 3 15 2.2408 - 2.1899 0.88 2550 134 0.1831 0.2304 REMARK 3 16 2.1899 - 2.1433 0.89 2463 136 0.1888 0.1919 REMARK 3 17 2.1433 - 2.1004 0.91 2633 138 0.1920 0.2419 REMARK 3 18 2.1004 - 2.0608 0.91 2521 139 0.2026 0.2278 REMARK 3 19 2.0608 - 2.0240 0.91 2644 136 0.2088 0.2402 REMARK 3 20 2.0240 - 1.9897 0.91 2540 138 0.2363 0.2600 REMARK 3 21 1.9897 - 1.9576 0.90 2572 138 0.2461 0.2831 REMARK 3 22 1.9576 - 1.9275 0.92 2581 162 0.2671 0.2879 REMARK 3 23 1.9275 - 1.8991 0.92 2526 170 0.2818 0.2859 REMARK 3 24 1.8991 - 1.8724 0.93 2643 172 0.2937 0.3453 REMARK 3 25 1.8724 - 1.8471 0.76 2158 121 0.3011 0.3040 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 2929 REMARK 3 ANGLE : 1.288 3972 REMARK 3 CHIRALITY : 0.069 439 REMARK 3 PLANARITY : 0.009 511 REMARK 3 DIHEDRAL : 12.248 1761 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MQI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002827. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978570 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36572 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.847 REMARK 200 RESOLUTION RANGE LOW (A) : 49.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.75200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR SOLUTION: 20% (W/V) PEG REMARK 280 3350, 200 MM NA2SO4 PROTEIN SOLUTION: 8.5 MG/ML, 150 MM KCL, 25 REMARK 280 MM HEPS PH 7.2, 1 MM TCEP 200 NL PROTEIN SOLUTION AND 200 NL OF REMARK 280 RESERVOIR SOLUTION WERE MIXED., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.52300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.52300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.00400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.66850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.00400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.66850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.52300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.00400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.66850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.52300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.00400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 35.66850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NE ARG A 40 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 LEU A 3 REMARK 465 HIS A 4 REMARK 465 MET A 5 REMARK 465 MET A 6 REMARK 465 ASP A 174 REMARK 465 GLN A 175 REMARK 465 GLU A 176 REMARK 465 LYS A 177 REMARK 465 LYS A 178 REMARK 465 ILE A 179 REMARK 465 ASP A 180 REMARK 465 ASP A 181 REMARK 465 ASP A 182 REMARK 465 GLY A 239 REMARK 465 SER A 240 REMARK 465 THR A 241 REMARK 465 GLY A 242 REMARK 465 SER A 243 REMARK 465 THR A 244 REMARK 465 GLN A 245 REMARK 465 ARG A 246 REMARK 465 ILE A 455 REMARK 465 SER A 456 REMARK 465 PRO A 457 REMARK 465 ASP A 458 REMARK 465 GLU A 459 REMARK 465 ALA A 460 REMARK 465 VAL A 461 REMARK 465 ARG A 462 REMARK 465 GLU A 463 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 374 HG1 THR A 376 1.52 REMARK 500 HH12 ARG A 40 O HOH A 708 1.55 REMARK 500 O HOH A 747 O HOH A 800 1.81 REMARK 500 O HOH A 738 O HOH A 778 1.88 REMARK 500 O HOH A 815 O HOH A 854 1.88 REMARK 500 O HOH A 800 O HOH A 854 1.94 REMARK 500 O HOH A 784 O HOH A 818 2.01 REMARK 500 ND2 ASN A 337 O HOH A 701 2.04 REMARK 500 O HOH A 778 O HOH A 811 2.09 REMARK 500 O HOH A 783 O HOH A 808 2.10 REMARK 500 OE2 GLU A 211 O HOH A 702 2.10 REMARK 500 OD2 ASP A 37 O HOH A 703 2.10 REMARK 500 O HOH A 854 O HOH A 860 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 750 O HOH A 825 4555 2.08 REMARK 500 O HOH A 785 O HOH A 827 4555 2.19 REMARK 500 O HOH A 767 O HOH A 856 5555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 199 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 339 CG - CD - NE ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG A 343 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 36.93 -98.56 REMARK 500 ASP A 46 -169.76 -74.89 REMARK 500 ASP A 64 -58.84 -126.30 REMARK 500 SER A 105 -78.16 -87.70 REMARK 500 ALA A 125 64.15 -58.63 REMARK 500 ASP A 425 69.04 -102.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1603 DBREF 5MQI A 1 238 UNP Q9UNS1 TIM_HUMAN 1 238 DBREF 5MQI A 245 463 UNP Q9UNS1 TIM_HUMAN 331 463 SEQADV 5MQI ASP A -1 UNP Q9UNS1 EXPRESSION TAG SEQADV 5MQI PRO A 0 UNP Q9UNS1 EXPRESSION TAG SEQADV 5MQI GLY A 239 UNP Q9UNS1 LINKER SEQADV 5MQI SER A 240 UNP Q9UNS1 LINKER SEQADV 5MQI THR A 241 UNP Q9UNS1 LINKER SEQADV 5MQI GLY A 242 UNP Q9UNS1 LINKER SEQADV 5MQI SER A 243 UNP Q9UNS1 LINKER SEQADV 5MQI THR A 244 UNP Q9UNS1 LINKER SEQRES 1 A 379 ASP PRO MET ASP LEU HIS MET MET ASN CYS GLU LEU LEU SEQRES 2 A 379 ALA THR CYS SER ALA LEU GLY TYR LEU GLU GLY ASP THR SEQRES 3 A 379 TYR HIS LYS GLU PRO ASP CYS LEU GLU SER VAL LYS ASP SEQRES 4 A 379 LEU ILE ARG TYR LEU ARG HIS GLU ASP GLU THR ARG ASP SEQRES 5 A 379 VAL ARG GLN GLN LEU GLY ALA ALA GLN ILE LEU GLN SER SEQRES 6 A 379 ASP LEU LEU PRO ILE LEU THR GLN HIS HIS GLN ASP LYS SEQRES 7 A 379 PRO LEU PHE ASP ALA VAL ILE ARG LEU MET VAL ASN LEU SEQRES 8 A 379 THR GLN PRO ALA LEU LEU CYS PHE GLY ASN LEU PRO LYS SEQRES 9 A 379 GLU PRO SER PHE ARG HIS HIS PHE LEU GLN VAL LEU THR SEQRES 10 A 379 TYR LEU GLN ALA TYR LYS GLU ALA PHE ALA SER GLU LYS SEQRES 11 A 379 ALA PHE GLY VAL LEU SER GLU THR LEU TYR GLU LEU LEU SEQRES 12 A 379 GLN LEU GLY TRP GLU GLU ARG GLN GLU GLU ASP ASN LEU SEQRES 13 A 379 LEU ILE GLU ARG ILE LEU LEU LEU VAL ARG ASN ILE LEU SEQRES 14 A 379 HIS VAL PRO ALA ASP LEU ASP GLN GLU LYS LYS ILE ASP SEQRES 15 A 379 ASP ASP ALA SER ALA HIS ASP GLN LEU LEU TRP ALA ILE SEQRES 16 A 379 HIS LEU SER GLY LEU ASP ASP LEU LEU LEU PHE LEU ALA SEQRES 17 A 379 SER SER SER ALA GLU GLU GLN TRP SER LEU HIS VAL LEU SEQRES 18 A 379 GLU ILE VAL SER LEU MET PHE ARG ASP GLN ASN PRO GLU SEQRES 19 A 379 GLN LEU ALA GLY VAL GLY GLY SER THR GLY SER THR GLN SEQRES 20 A 379 ARG ARG SER ALA LEU ASN VAL ARG LEU PHE LEU ARG ASP SEQRES 21 A 379 PHE CYS SER GLU PHE LEU GLU ASN CYS TYR ASN ARG LEU SEQRES 22 A 379 MET GLY SER VAL LYS ASP HIS LEU LEU ARG GLU LYS ALA SEQRES 23 A 379 GLN GLN HIS ASP GLU THR TYR TYR MET TRP ALA LEU ALA SEQRES 24 A 379 PHE PHE MET ALA PHE ASN ARG ALA ALA SER PHE ARG PRO SEQRES 25 A 379 GLY LEU VAL SER GLU THR LEU SER VAL ARG THR PHE HIS SEQRES 26 A 379 PHE ILE GLU GLN ASN LEU THR ASN TYR TYR GLU MET MET SEQRES 27 A 379 LEU THR ASP ARG LYS GLU ALA ALA SER TRP ALA ARG ARG SEQRES 28 A 379 MET HIS LEU ALA LEU LYS ALA TYR GLN GLU LEU LEU ALA SEQRES 29 A 379 THR VAL ASN GLU MET ASP ILE SER PRO ASP GLU ALA VAL SEQRES 30 A 379 ARG GLU HET SO4 A1600 5 HET SO4 A1601 5 HET SO4 A1602 5 HET SO4 A1603 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 HOH *161(H2 O) HELIX 1 AA1 ASN A 7 ALA A 16 1 10 HELIX 2 AA2 ASP A 30 HIS A 44 1 15 HELIX 3 AA3 ARG A 49 GLN A 59 1 11 HELIX 4 AA4 GLN A 59 ASP A 64 1 6 HELIX 5 AA5 ASP A 64 HIS A 72 1 9 HELIX 6 AA6 ASP A 75 THR A 90 1 16 HELIX 7 AA7 PRO A 92 GLY A 98 1 7 HELIX 8 AA8 SER A 105 PHE A 124 1 20 HELIX 9 AA9 SER A 126 LEU A 143 1 18 HELIX 10 AB1 GLY A 144 ARG A 148 5 5 HELIX 11 AB2 GLN A 149 VAL A 169 1 21 HELIX 12 AB3 SER A 184 SER A 196 1 13 HELIX 13 AB4 GLY A 197 SER A 208 1 12 HELIX 14 AB5 SER A 209 GLN A 213 5 5 HELIX 15 AB6 TRP A 214 PHE A 226 1 13 HELIX 16 AB7 ASN A 230 ALA A 235 1 6 HELIX 17 AB8 ALA A 335 CYS A 353 1 19 HELIX 18 AB9 CYS A 353 GLU A 368 1 16 HELIX 19 AC1 LYS A 369 GLN A 372 5 4 HELIX 20 AC2 GLU A 375 ALA A 392 1 18 HELIX 21 AC3 ARG A 395 LEU A 403 5 9 HELIX 22 AC4 SER A 404 ASP A 425 1 22 HELIX 23 AC5 GLU A 428 GLU A 452 1 25 SHEET 1 AA1 2 GLY A 18 GLU A 21 0 SHEET 2 AA1 2 THR A 24 LYS A 27 -1 O HIS A 26 N TYR A 19 CISPEP 1 VAL A 169 PRO A 170 0 3.31 SITE 1 AC1 7 ARG A 333 ARG A 339 SER A 404 VAL A 405 SITE 2 AC1 7 ARG A 406 HOH A 737 HOH A 761 SITE 1 AC2 6 ARG A 343 ASP A 344 SER A 347 GLU A 412 SITE 2 AC2 6 LEU A 423 HOH A 704 SITE 1 AC3 4 ALA A 335 ASN A 337 VAL A 338 ASP A 454 SITE 1 AC4 5 LYS A 36 ARG A 40 ARG A 84 HOH A 708 SITE 2 AC4 5 HOH A 718 CRYST1 68.008 71.337 185.046 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014704 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014018 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005404 0.00000