HEADER SIGNALING PROTEIN 23-DEC-16 5MRI TITLE CRYSTAL STRUCTURE OF THE VPS10P DOMAIN OF HUMAN SORTILIN/NTS3 IN TITLE 2 COMPLEX WITH TRIAZOLONE 18 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTILIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 100 KDA NT RECEPTOR,GLYCOPROTEIN 95,GP95,NEUROTENSIN COMPND 5 RECEPTOR 3,NTR3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SORT1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS VPS10P, RECEPTOR, SORTILIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.L.ANDERSEN,D.STRANDBYGAARD,S.THIRUP REVDAT 4 17-JAN-24 5MRI 1 HETSYN REVDAT 3 29-JUL-20 5MRI 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 09-AUG-17 5MRI 1 JRNL REVDAT 1 17-MAY-17 5MRI 0 JRNL AUTH J.L.ANDERSEN,S.LINDBERG,M.LANGGARD,P.J.MALTAS,L.C.B.RONN, JRNL AUTH 2 C.BUNDGAARD,D.STRANDBYGAARD,S.THIRUP,S.P.WATSON JRNL TITL THE IDENTIFICATION OF NOVEL ACID ISOSTERE BASED INHIBITORS JRNL TITL 2 OF THE VPS10P FAMILY SORTING RECEPTOR SORTILIN. JRNL REF BIOORG. MED. CHEM. LETT. V. 27 2629 2017 JRNL REFN ESSN 1464-3405 JRNL PMID 28462834 JRNL DOI 10.1016/J.BMCL.2017.02.028 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2614: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 67019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9257 - 4.8183 0.98 4760 147 0.1757 0.1893 REMARK 3 2 4.8183 - 3.8251 0.97 4608 147 0.1544 0.1617 REMARK 3 3 3.8251 - 3.3418 0.98 4621 136 0.1733 0.2195 REMARK 3 4 3.3418 - 3.0363 0.98 4633 146 0.1945 0.2096 REMARK 3 5 3.0363 - 2.8188 0.98 4650 142 0.2055 0.2142 REMARK 3 6 2.8188 - 2.6526 0.99 4618 149 0.2105 0.2791 REMARK 3 7 2.6526 - 2.5198 0.98 4644 139 0.2192 0.2480 REMARK 3 8 2.5198 - 2.4101 0.99 4652 144 0.2198 0.2748 REMARK 3 9 2.4101 - 2.3173 0.99 4642 144 0.2284 0.2377 REMARK 3 10 2.3173 - 2.2373 0.99 4634 138 0.2319 0.2456 REMARK 3 11 2.2373 - 2.1674 0.99 4647 145 0.2426 0.2890 REMARK 3 12 2.1674 - 2.1054 0.99 4658 140 0.2568 0.2568 REMARK 3 13 2.1054 - 2.0500 0.99 4616 143 0.2878 0.3546 REMARK 3 14 2.0500 - 2.0000 0.99 4627 149 0.3154 0.3065 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5483 REMARK 3 ANGLE : 0.761 7456 REMARK 3 CHIRALITY : 0.051 828 REMARK 3 PLANARITY : 0.008 951 REMARK 3 DIHEDRAL : 16.007 3243 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.1516 -53.9943 17.0717 REMARK 3 T TENSOR REMARK 3 T11: 0.2948 T22: 0.6237 REMARK 3 T33: 0.3515 T12: 0.1596 REMARK 3 T13: -0.0267 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 2.8083 L22: 6.1883 REMARK 3 L33: 3.3988 L12: 0.5145 REMARK 3 L13: -0.3287 L23: -0.7713 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: 0.1346 S13: 0.3126 REMARK 3 S21: -0.1730 S22: 0.1095 S23: 0.2513 REMARK 3 S31: -0.3640 S32: -0.7009 S33: -0.1772 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.9777 -80.3763 24.5792 REMARK 3 T TENSOR REMARK 3 T11: 0.3673 T22: 0.4044 REMARK 3 T33: 0.3637 T12: -0.0419 REMARK 3 T13: 0.0359 T23: -0.0924 REMARK 3 L TENSOR REMARK 3 L11: 2.2392 L22: 0.5616 REMARK 3 L33: 0.5398 L12: -0.2641 REMARK 3 L13: -0.4122 L23: -0.1129 REMARK 3 S TENSOR REMARK 3 S11: -0.1347 S12: 0.2749 S13: -0.3575 REMARK 3 S21: -0.0395 S22: -0.0101 S23: 0.0692 REMARK 3 S31: 0.1908 S32: -0.1936 S33: 0.1533 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4139 -87.3615 30.9270 REMARK 3 T TENSOR REMARK 3 T11: 0.3438 T22: 0.3303 REMARK 3 T33: 0.4726 T12: 0.1176 REMARK 3 T13: 0.0807 T23: 0.1058 REMARK 3 L TENSOR REMARK 3 L11: 2.7046 L22: 2.7833 REMARK 3 L33: 1.9507 L12: 0.7106 REMARK 3 L13: -0.5962 L23: 0.5936 REMARK 3 S TENSOR REMARK 3 S11: -0.2452 S12: -0.1244 S13: -0.5452 REMARK 3 S21: 0.1578 S22: -0.0893 S23: -0.2182 REMARK 3 S31: 0.2828 S32: 0.3933 S33: 0.2404 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 470 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1813 -58.1304 29.5231 REMARK 3 T TENSOR REMARK 3 T11: 0.2219 T22: 0.3314 REMARK 3 T33: 0.1884 T12: -0.0474 REMARK 3 T13: -0.0279 T23: -0.0000 REMARK 3 L TENSOR REMARK 3 L11: 1.8420 L22: 2.0674 REMARK 3 L33: 2.1245 L12: -0.3924 REMARK 3 L13: -0.7103 L23: -0.2159 REMARK 3 S TENSOR REMARK 3 S11: 0.0756 S12: -0.2217 S13: 0.0740 REMARK 3 S21: 0.1094 S22: -0.0700 S23: -0.1278 REMARK 3 S31: -0.2025 S32: 0.3067 S33: -0.0062 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 471 THROUGH 626 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9818 -49.6470 15.5103 REMARK 3 T TENSOR REMARK 3 T11: 0.4020 T22: 0.3649 REMARK 3 T33: 0.3101 T12: 0.0632 REMARK 3 T13: 0.0233 T23: 0.0516 REMARK 3 L TENSOR REMARK 3 L11: 3.0928 L22: 0.6563 REMARK 3 L33: 2.0415 L12: -0.3255 REMARK 3 L13: -0.4937 L23: 0.1610 REMARK 3 S TENSOR REMARK 3 S11: 0.1762 S12: 0.2484 S13: 0.3184 REMARK 3 S21: -0.0016 S22: -0.0523 S23: 0.0448 REMARK 3 S31: -0.3249 S32: -0.3420 S33: -0.1325 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 627 THROUGH 715 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7932 -75.3432 21.1654 REMARK 3 T TENSOR REMARK 3 T11: 0.5230 T22: 0.8206 REMARK 3 T33: 0.5388 T12: 0.1051 REMARK 3 T13: 0.0208 T23: 0.1441 REMARK 3 L TENSOR REMARK 3 L11: 1.6942 L22: 3.5524 REMARK 3 L33: 4.8197 L12: -2.4753 REMARK 3 L13: 2.8750 L23: -4.1602 REMARK 3 S TENSOR REMARK 3 S11: -0.0388 S12: 0.0538 S13: -0.1411 REMARK 3 S21: 0.1400 S22: -0.3336 S23: -0.2888 REMARK 3 S31: 0.0519 S32: 0.5239 S33: 0.2929 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MRI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.969 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67029 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 64.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.09600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3F6K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES-TRIS PH 7.3 0.4 M SODIUM REMARK 280 MALONATE 6 % (V/V) GLYCEROL 26 % (W/V) PEG 3350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 79.14800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.52900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 79.14800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.52900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1213 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 45 REMARK 465 ALA A 46 REMARK 465 PRO A 47 REMARK 465 GLY A 48 REMARK 465 GLU A 49 REMARK 465 ASP A 50 REMARK 465 GLU A 51 REMARK 465 GLU A 52 REMARK 465 CYS A 53 REMARK 465 LYS A 716 REMARK 465 GLN A 717 REMARK 465 ASN A 718 REMARK 465 SER A 719 REMARK 465 LYS A 720 REMARK 465 SER A 721 REMARK 465 ASN A 722 REMARK 465 SER A 723 REMARK 465 GLY A 724 REMARK 465 SER A 725 REMARK 465 ALA A 726 REMARK 465 MET A 727 REMARK 465 ILE A 728 REMARK 465 GLU A 729 REMARK 465 GLY A 730 REMARK 465 ARG A 731 REMARK 465 GLY A 732 REMARK 465 VAL A 733 REMARK 465 GLY A 734 REMARK 465 HIS A 735 REMARK 465 HIS A 736 REMARK 465 HIS A 737 REMARK 465 HIS A 738 REMARK 465 HIS A 739 REMARK 465 HIS A 740 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1154 O HOH A 1205 1.85 REMARK 500 O HOH A 1145 O HOH A 1212 1.93 REMARK 500 O HOH A 1098 O HOH A 1218 1.94 REMARK 500 O HOH A 903 O HOH A 1215 1.99 REMARK 500 O HOH A 1214 O HOH A 1222 1.99 REMARK 500 O HOH A 933 O HOH A 1200 2.01 REMARK 500 OE2 GLU A 607 O HOH A 901 2.03 REMARK 500 OG SER A 713 O HOH A 902 2.06 REMARK 500 N ASN A 680 O HOH A 903 2.07 REMARK 500 O HOH A 1225 O HOH A 1239 2.09 REMARK 500 NE2 GLN A 608 O HOH A 904 2.12 REMARK 500 O GLY A 336 O HOH A 905 2.13 REMARK 500 O HOH A 936 O HOH A 1188 2.14 REMARK 500 O HOH A 1211 O HOH A 1233 2.14 REMARK 500 O HOH A 978 O HOH A 1119 2.17 REMARK 500 OE2 GLU A 505 O HOH A 906 2.18 REMARK 500 O GLU A 136 O HOH A 907 2.19 REMARK 500 O HOH A 1124 O HOH A 1217 2.19 REMARK 500 O6 NAG A 806 O HOH A 908 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 649 C - N - CD ANGL. DEV. = -18.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 74 -104.61 -94.62 REMARK 500 ASN A 130 14.44 58.62 REMARK 500 GLU A 144 -100.82 13.78 REMARK 500 ALA A 240 -82.62 -117.33 REMARK 500 TYR A 362 94.12 -162.53 REMARK 500 ALA A 431 -145.92 -131.62 REMARK 500 ASN A 512 27.27 -149.76 REMARK 500 SER A 653 -56.83 68.36 REMARK 500 REMARK 500 REMARK: NULL DBREF 5MRI A 45 723 UNP Q99523 SORT_HUMAN 78 756 SEQADV 5MRI MET A 617 UNP Q99523 VAL 650 CONFLICT SEQADV 5MRI GLY A 724 UNP Q99523 EXPRESSION TAG SEQADV 5MRI SER A 725 UNP Q99523 EXPRESSION TAG SEQADV 5MRI ALA A 726 UNP Q99523 EXPRESSION TAG SEQADV 5MRI MET A 727 UNP Q99523 EXPRESSION TAG SEQADV 5MRI ILE A 728 UNP Q99523 EXPRESSION TAG SEQADV 5MRI GLU A 729 UNP Q99523 EXPRESSION TAG SEQADV 5MRI GLY A 730 UNP Q99523 EXPRESSION TAG SEQADV 5MRI ARG A 731 UNP Q99523 EXPRESSION TAG SEQADV 5MRI GLY A 732 UNP Q99523 EXPRESSION TAG SEQADV 5MRI VAL A 733 UNP Q99523 EXPRESSION TAG SEQADV 5MRI GLY A 734 UNP Q99523 EXPRESSION TAG SEQADV 5MRI HIS A 735 UNP Q99523 EXPRESSION TAG SEQADV 5MRI HIS A 736 UNP Q99523 EXPRESSION TAG SEQADV 5MRI HIS A 737 UNP Q99523 EXPRESSION TAG SEQADV 5MRI HIS A 738 UNP Q99523 EXPRESSION TAG SEQADV 5MRI HIS A 739 UNP Q99523 EXPRESSION TAG SEQADV 5MRI HIS A 740 UNP Q99523 EXPRESSION TAG SEQRES 1 A 696 SER ALA PRO GLY GLU ASP GLU GLU CYS GLY ARG VAL ARG SEQRES 2 A 696 ASP PHE VAL ALA LYS LEU ALA ASN ASN THR HIS GLN HIS SEQRES 3 A 696 VAL PHE ASP ASP LEU ARG GLY SER VAL SER LEU SER TRP SEQRES 4 A 696 VAL GLY ASP SER THR GLY VAL ILE LEU VAL LEU THR THR SEQRES 5 A 696 PHE HIS VAL PRO LEU VAL ILE MET THR PHE GLY GLN SER SEQRES 6 A 696 LYS LEU TYR ARG SER GLU ASP TYR GLY LYS ASN PHE LYS SEQRES 7 A 696 ASP ILE THR ASP LEU ILE ASN ASN THR PHE ILE ARG THR SEQRES 8 A 696 GLU PHE GLY MET ALA ILE GLY PRO GLU ASN SER GLY LYS SEQRES 9 A 696 VAL VAL LEU THR ALA GLU VAL SER GLY GLY SER ARG GLY SEQRES 10 A 696 GLY ARG ILE PHE ARG SER SER ASP PHE ALA LYS ASN PHE SEQRES 11 A 696 VAL GLN THR ASP LEU PRO PHE HIS PRO LEU THR GLN MET SEQRES 12 A 696 MET TYR SER PRO GLN ASN SER ASP TYR LEU LEU ALA LEU SEQRES 13 A 696 SER THR GLU ASN GLY LEU TRP VAL SER LYS ASN PHE GLY SEQRES 14 A 696 GLY LYS TRP GLU GLU ILE HIS LYS ALA VAL CYS LEU ALA SEQRES 15 A 696 LYS TRP GLY SER ASP ASN THR ILE PHE PHE THR THR TYR SEQRES 16 A 696 ALA ASN GLY SER CYS LYS ALA ASP LEU GLY ALA LEU GLU SEQRES 17 A 696 LEU TRP ARG THR SER ASP LEU GLY LYS SER PHE LYS THR SEQRES 18 A 696 ILE GLY VAL LYS ILE TYR SER PHE GLY LEU GLY GLY ARG SEQRES 19 A 696 PHE LEU PHE ALA SER VAL MET ALA ASP LYS ASP THR THR SEQRES 20 A 696 ARG ARG ILE HIS VAL SER THR ASP GLN GLY ASP THR TRP SEQRES 21 A 696 SER MET ALA GLN LEU PRO SER VAL GLY GLN GLU GLN PHE SEQRES 22 A 696 TYR SER ILE LEU ALA ALA ASN ASP ASP MET VAL PHE MET SEQRES 23 A 696 HIS VAL ASP GLU PRO GLY ASP THR GLY PHE GLY THR ILE SEQRES 24 A 696 PHE THR SER ASP ASP ARG GLY ILE VAL TYR SER LYS SER SEQRES 25 A 696 LEU ASP ARG HIS LEU TYR THR THR THR GLY GLY GLU THR SEQRES 26 A 696 ASP PHE THR ASN VAL THR SER LEU ARG GLY VAL TYR ILE SEQRES 27 A 696 THR SER VAL LEU SER GLU ASP ASN SER ILE GLN THR MET SEQRES 28 A 696 ILE THR PHE ASP GLN GLY GLY ARG TRP THR HIS LEU ARG SEQRES 29 A 696 LYS PRO GLU ASN SER GLU CYS ASP ALA THR ALA LYS ASN SEQRES 30 A 696 LYS ASN GLU CYS SER LEU HIS ILE HIS ALA SER TYR SER SEQRES 31 A 696 ILE SER GLN LYS LEU ASN VAL PRO MET ALA PRO LEU SER SEQRES 32 A 696 GLU PRO ASN ALA VAL GLY ILE VAL ILE ALA HIS GLY SER SEQRES 33 A 696 VAL GLY ASP ALA ILE SER VAL MET VAL PRO ASP VAL TYR SEQRES 34 A 696 ILE SER ASP ASP GLY GLY TYR SER TRP THR LYS MET LEU SEQRES 35 A 696 GLU GLY PRO HIS TYR TYR THR ILE LEU ASP SER GLY GLY SEQRES 36 A 696 ILE ILE VAL ALA ILE GLU HIS SER SER ARG PRO ILE ASN SEQRES 37 A 696 VAL ILE LYS PHE SER THR ASP GLU GLY GLN CYS TRP GLN SEQRES 38 A 696 THR TYR THR PHE THR ARG ASP PRO ILE TYR PHE THR GLY SEQRES 39 A 696 LEU ALA SER GLU PRO GLY ALA ARG SER MET ASN ILE SER SEQRES 40 A 696 ILE TRP GLY PHE THR GLU SER PHE LEU THR SER GLN TRP SEQRES 41 A 696 VAL SER TYR THR ILE ASP PHE LYS ASP ILE LEU GLU ARG SEQRES 42 A 696 ASN CYS GLU GLU LYS ASP TYR THR ILE TRP LEU ALA HIS SEQRES 43 A 696 SER THR ASP PRO GLU ASP TYR GLU ASP GLY CYS ILE LEU SEQRES 44 A 696 GLY TYR LYS GLU GLN PHE LEU ARG LEU ARG LYS SER SER SEQRES 45 A 696 MET CYS GLN ASN GLY ARG ASP TYR VAL VAL THR LYS GLN SEQRES 46 A 696 PRO SER ILE CYS LEU CYS SER LEU GLU ASP PHE LEU CYS SEQRES 47 A 696 ASP PHE GLY TYR TYR ARG PRO GLU ASN ASP SER LYS CYS SEQRES 48 A 696 VAL GLU GLN PRO GLU LEU LYS GLY HIS ASP LEU GLU PHE SEQRES 49 A 696 CYS LEU TYR GLY ARG GLU GLU HIS LEU THR THR ASN GLY SEQRES 50 A 696 TYR ARG LYS ILE PRO GLY ASP LYS CYS GLN GLY GLY VAL SEQRES 51 A 696 ASN PRO VAL ARG GLU VAL LYS ASP LEU LYS LYS LYS CYS SEQRES 52 A 696 THR SER ASN PHE LEU SER PRO GLU LYS GLN ASN SER LYS SEQRES 53 A 696 SER ASN SER GLY SER ALA MET ILE GLU GLY ARG GLY VAL SEQRES 54 A 696 GLY HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET NAG C 1 14 HET NAG C 2 14 HET NAG A 806 14 HET Q9Y A 807 15 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM Q9Y ~{N}-METHYL-3-(3-METHYLBUTYL)-5-OXIDANYL-1,2,3- HETNAM 2 Q9Y TRIAZOLE-4-CARBOXAMIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 5(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 5 Q9Y C9 H16 N4 O2 FORMUL 6 HOH *347(H2 O) HELIX 1 AA1 ASP A 58 ASN A 65 1 8 HELIX 2 AA2 LEU A 101 THR A 105 5 5 HELIX 3 AA3 THR A 125 ASN A 129 5 5 HELIX 4 AA4 ALA A 431 GLN A 437 1 7 HELIX 5 AA5 ASP A 496 GLY A 499 5 4 HELIX 6 AA6 SER A 558 THR A 561 5 4 HELIX 7 AA7 GLU A 580 LYS A 582 5 3 HELIX 8 AA8 SER A 636 GLU A 638 5 3 HELIX 9 AA9 LYS A 662 GLY A 672 1 11 HELIX 10 AB1 ARG A 673 HIS A 676 5 4 HELIX 11 AB2 LEU A 703 SER A 709 1 7 SHEET 1 AA1 4 THR A 67 VAL A 71 0 SHEET 2 AA1 4 TRP A 564 ASP A 570 -1 O THR A 568 N HIS A 68 SHEET 3 AA1 4 ASN A 549 THR A 556 -1 N ILE A 552 O TYR A 567 SHEET 4 AA1 4 ILE A 534 ALA A 540 -1 N ALA A 540 O SER A 551 SHEET 1 AA2 4 VAL A 79 TRP A 83 0 SHEET 2 AA2 4 ILE A 91 HIS A 98 -1 O LEU A 94 N SER A 80 SHEET 3 AA2 4 GLY A 107 SER A 114 -1 O TYR A 112 N VAL A 93 SHEET 4 AA2 4 LYS A 122 ASP A 123 -1 O LYS A 122 N ARG A 113 SHEET 1 AA3 4 ALA A 140 ILE A 141 0 SHEET 2 AA3 4 VAL A 149 ALA A 153 -1 O VAL A 150 N ALA A 140 SHEET 3 AA3 4 ARG A 163 SER A 167 -1 O PHE A 165 N LEU A 151 SHEET 4 AA3 4 VAL A 175 ASP A 178 -1 O THR A 177 N ILE A 164 SHEET 1 AA4 4 MET A 188 TYR A 189 0 SHEET 2 AA4 4 LEU A 197 LEU A 200 -1 O LEU A 198 N MET A 188 SHEET 3 AA4 4 LEU A 206 SER A 209 -1 O TRP A 207 N ALA A 199 SHEET 4 AA4 4 GLU A 217 HIS A 220 -1 O HIS A 220 N LEU A 206 SHEET 1 AA5 7 VAL A 223 TRP A 228 0 SHEET 2 AA5 7 ILE A 234 THR A 238 -1 O PHE A 235 N LYS A 227 SHEET 3 AA5 7 LEU A 251 THR A 256 -1 O TRP A 254 N PHE A 236 SHEET 4 AA5 7 LYS A 264 GLY A 276 -1 O ILE A 270 N LEU A 251 SHEET 5 AA5 7 PHE A 279 MET A 285 -1 O SER A 283 N TYR A 271 SHEET 6 AA5 7 ARG A 292 SER A 297 -1 O HIS A 295 N ALA A 282 SHEET 7 AA5 7 SER A 305 MET A 306 -1 O SER A 305 N VAL A 296 SHEET 1 AA6 4 TYR A 318 ALA A 323 0 SHEET 2 AA6 4 VAL A 328 ASP A 333 -1 O PHE A 329 N ALA A 322 SHEET 3 AA6 4 PHE A 340 SER A 346 -1 O PHE A 344 N MET A 330 SHEET 4 AA6 4 TYR A 353 LEU A 361 -1 O SER A 354 N THR A 345 SHEET 1 AA7 8 THR A 372 ASN A 373 0 SHEET 2 AA7 8 TYR A 381 LEU A 386 -1 O ILE A 382 N THR A 372 SHEET 3 AA7 8 ILE A 392 THR A 397 -1 O MET A 395 N THR A 383 SHEET 4 AA7 8 THR A 405 ARG A 408 -1 O THR A 405 N ILE A 396 SHEET 5 AA7 8 SER A 426 ILE A 429 -1 O LEU A 427 N LEU A 407 SHEET 6 AA7 8 VAL A 455 GLY A 462 -1 O GLY A 462 N SER A 426 SHEET 7 AA7 8 ASP A 471 SER A 475 -1 O TYR A 473 N ALA A 457 SHEET 8 AA7 8 THR A 483 LEU A 486 -1 O THR A 483 N ILE A 474 SHEET 1 AA8 4 HIS A 490 LEU A 495 0 SHEET 2 AA8 4 ILE A 500 GLU A 505 -1 O ILE A 504 N TYR A 491 SHEET 3 AA8 4 VAL A 513 SER A 517 -1 O LYS A 515 N ALA A 503 SHEET 4 AA8 4 GLN A 525 THR A 528 -1 O TYR A 527 N ILE A 514 SHEET 1 AA9 3 TYR A 584 LEU A 588 0 SHEET 2 AA9 3 TYR A 605 LEU A 612 -1 O PHE A 609 N TRP A 587 SHEET 3 AA9 3 THR A 627 ILE A 632 -1 O GLN A 629 N GLN A 608 SHEET 1 AB1 2 PHE A 640 CYS A 642 0 SHEET 2 AB1 2 TYR A 682 LYS A 684 -1 O ARG A 683 N LEU A 641 SHEET 1 AB2 2 TYR A 646 TYR A 647 0 SHEET 2 AB2 2 VAL A 656 GLU A 657 -1 O VAL A 656 N TYR A 647 SHEET 1 AB3 2 THR A 678 THR A 679 0 SHEET 2 AB3 2 LYS A 701 ASP A 702 -1 O LYS A 701 N THR A 679 SSBOND 1 CYS A 224 CYS A 244 1555 1555 2.04 SSBOND 2 CYS A 415 CYS A 425 1555 1555 2.03 SSBOND 3 CYS A 579 CYS A 618 1555 1555 2.04 SSBOND 4 CYS A 601 CYS A 633 1555 1555 2.03 SSBOND 5 CYS A 635 CYS A 690 1555 1555 2.05 SSBOND 6 CYS A 642 CYS A 655 1555 1555 2.04 SSBOND 7 CYS A 669 CYS A 707 1555 1555 2.03 LINK ND2 ASN A 129 C1 NAG A 806 1555 1555 1.44 LINK ND2 ASN A 373 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 549 C1 NAG C 1 1555 1555 1.47 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 CRYST1 158.296 81.058 105.690 90.00 131.10 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006317 0.000000 0.005511 0.00000 SCALE2 0.000000 0.012337 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012556 0.00000