HEADER TRANSFERASE 23-DEC-16 5MRK TITLE STRUCTURAL BASIS OF ZIKA VIRUS METHYLTRANSFERASE INHIBITION BY TITLE 2 SINEFUNGIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2521-2784; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS (STRAIN MR 766); SOURCE 3 ORGANISM_COMMON: ZIKV; SOURCE 4 ORGANISM_TAXID: 64320; SOURCE 5 STRAIN: MR 766; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZIKA, VIRUS, METHYLTRANSFERASE, SINEFUNGIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.HERCIK,E.BOURA REVDAT 4 17-JAN-24 5MRK 1 REMARK REVDAT 3 28-JUN-17 5MRK 1 JRNL REVDAT 2 17-MAY-17 5MRK 1 JRNL REVDAT 1 25-JAN-17 5MRK 0 JRNL AUTH K.HERCIK,J.BRYNDA,R.NENCKA,E.BOURA JRNL TITL STRUCTURAL BASIS OF ZIKA VIRUS METHYLTRANSFERASE INHIBITION JRNL TITL 2 BY SINEFUNGIN. JRNL REF ARCH. VIROL. V. 162 2091 2017 JRNL REFN ISSN 1432-8798 JRNL PMID 28357511 JRNL DOI 10.1007/S00705-017-3345-X REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.160 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 82986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 4141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.2445 - 5.8910 0.98 2853 149 0.2144 0.2488 REMARK 3 2 5.8910 - 4.6809 1.00 2905 157 0.1895 0.2078 REMARK 3 3 4.6809 - 4.0907 0.99 2921 153 0.1800 0.2059 REMARK 3 4 4.0907 - 3.7173 0.99 2860 154 0.1834 0.2245 REMARK 3 5 3.7173 - 3.4512 0.99 2909 156 0.1927 0.2168 REMARK 3 6 3.4512 - 3.2480 0.98 2868 148 0.2086 0.2604 REMARK 3 7 3.2480 - 3.0855 0.96 2810 146 0.2172 0.3097 REMARK 3 8 3.0855 - 2.9513 0.97 2837 149 0.2296 0.2740 REMARK 3 9 2.9513 - 2.8377 0.97 2811 146 0.2303 0.2933 REMARK 3 10 2.8377 - 2.7399 0.97 2814 145 0.2179 0.2560 REMARK 3 11 2.7399 - 2.6542 0.96 2838 149 0.2167 0.2744 REMARK 3 12 2.6542 - 2.5784 0.96 2802 145 0.2339 0.2849 REMARK 3 13 2.5784 - 2.5106 0.96 2875 148 0.2250 0.3100 REMARK 3 14 2.5106 - 2.4493 0.96 2787 144 0.2220 0.3040 REMARK 3 15 2.4493 - 2.3937 0.96 2788 144 0.2413 0.2795 REMARK 3 16 2.3937 - 2.3428 0.95 2777 151 0.2261 0.2504 REMARK 3 17 2.3428 - 2.2959 0.94 2780 149 0.2396 0.2939 REMARK 3 18 2.2959 - 2.2526 0.91 2620 135 0.2546 0.2918 REMARK 3 19 2.2526 - 2.2124 0.89 2648 137 0.2736 0.2958 REMARK 3 20 2.2124 - 2.1749 0.89 2620 136 0.2487 0.2749 REMARK 3 21 2.1749 - 2.1398 0.87 2525 134 0.2629 0.3080 REMARK 3 22 2.1398 - 2.1069 0.86 2526 131 0.2633 0.2722 REMARK 3 23 2.1069 - 2.0759 0.83 2411 123 0.2845 0.3074 REMARK 3 24 2.0759 - 2.0467 0.80 2357 125 0.3142 0.3669 REMARK 3 25 2.0467 - 2.0190 0.80 2256 123 0.3120 0.2933 REMARK 3 26 2.0190 - 1.9928 0.78 2317 120 0.3250 0.3847 REMARK 3 27 1.9928 - 1.9679 0.74 2174 114 0.3505 0.3694 REMARK 3 28 1.9679 - 1.9442 0.76 2248 118 0.5506 0.5760 REMARK 3 29 1.9442 - 1.9216 0.72 2053 108 0.6919 0.8233 REMARK 3 30 1.9216 - 1.9000 0.63 1855 104 0.5703 0.6938 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4073 REMARK 3 ANGLE : 0.725 5507 REMARK 3 CHIRALITY : 0.044 596 REMARK 3 PLANARITY : 0.005 698 REMARK 3 DIHEDRAL : 15.812 2420 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MRK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002905. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541870 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82986 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 31.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.180 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.60500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5KQR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE PH 4.6, 39% REMARK 280 PEG400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.42000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.00500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.42000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.00500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 GLY A 1 REMARK 465 GLY A 2 REMARK 465 GLY A 3 REMARK 465 THR A 4 REMARK 465 SER B 0 REMARK 465 GLY B 1 REMARK 465 GLY B 2 REMARK 465 GLY B 3 REMARK 465 THR B 4 REMARK 465 GLU B 38 REMARK 465 GLU B 39 REMARK 465 ALA B 40 REMARK 465 ARG B 41 REMARK 465 ARG B 42 REMARK 465 ALA B 43 REMARK 465 LEU B 44 REMARK 465 LYS B 45 REMARK 465 ASP B 46 REMARK 465 GLY B 47 REMARK 465 VAL B 48 REMARK 465 ALA B 49 REMARK 465 THR B 50 REMARK 465 GLY B 51 REMARK 465 GLY B 52 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 ARG A 125 CD NE CZ NH1 NH2 REMARK 470 ARG B 37 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 53 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 84 NE CZ NH1 NH2 REMARK 470 LYS B 105 CG CD CE NZ REMARK 470 LYS B 231 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 111 CD REMARK 480 GLU A 155 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR B 74 O HOH B 405 1.52 REMARK 500 HH TYR A 89 O MET A 114 1.53 REMARK 500 HE21 GLN B 72 O HOH B 410 1.58 REMARK 500 HH TYR A 90 O HOH A 406 1.59 REMARK 500 O SER B 237 O HOH B 401 1.72 REMARK 500 O HOH B 513 O HOH B 521 2.00 REMARK 500 O HOH A 520 O HOH A 583 2.03 REMARK 500 O HOH A 557 O HOH A 568 2.07 REMARK 500 O ASP A 46 O HOH A 401 2.12 REMARK 500 NZ LYS B 29 OE2 GLU B 34 2.13 REMARK 500 O HOH A 542 O HOH A 571 2.13 REMARK 500 O HOH A 592 O HOH A 593 2.15 REMARK 500 O HOH A 560 O HOH A 588 2.16 REMARK 500 O VAL A 257 O HOH A 402 2.18 REMARK 500 O HOH A 508 O HOH A 557 2.19 REMARK 500 O HOH A 462 O HOH A 524 2.19 REMARK 500 O HOH A 492 O HOH A 553 2.19 REMARK 500 O HOH B 436 O HOH B 518 2.19 REMARK 500 NZ LYS B 11 O HOH B 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 562 O HOH A 572 4555 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 117 51.54 -113.96 REMARK 500 ALA B 54 157.99 176.58 REMARK 500 GLN B 117 59.53 -107.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 54 VAL B 55 136.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 592 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH A 593 DISTANCE = 7.75 ANGSTROMS REMARK 525 HOH A 594 DISTANCE = 8.87 ANGSTROMS REMARK 525 HOH A 595 DISTANCE = 9.01 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SFG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SFG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 302 DBREF1 5MRK A 1 264 UNP A0A1B0YUR2_ZIKV DBREF2 5MRK A A0A1B0YUR2 2521 2784 DBREF1 5MRK B 1 264 UNP A0A1B0YUR2_ZIKV DBREF2 5MRK B A0A1B0YUR2 2521 2784 SEQADV 5MRK SER A 0 UNP A0A1B0YUR EXPRESSION TAG SEQADV 5MRK SER B 0 UNP A0A1B0YUR EXPRESSION TAG SEQRES 1 A 265 SER GLY GLY GLY THR GLY GLU THR LEU GLY GLU LYS TRP SEQRES 2 A 265 LYS ALA ARG LEU ASN GLN MET SER ALA LEU GLU PHE TYR SEQRES 3 A 265 SER TYR LYS LYS SER GLY ILE THR GLU VAL CYS ARG GLU SEQRES 4 A 265 GLU ALA ARG ARG ALA LEU LYS ASP GLY VAL ALA THR GLY SEQRES 5 A 265 GLY HIS ALA VAL SER ARG GLY SER ALA LYS LEU ARG TRP SEQRES 6 A 265 LEU VAL GLU ARG GLY TYR LEU GLN PRO TYR GLY LYS VAL SEQRES 7 A 265 ILE ASP LEU GLY CYS GLY ARG GLY GLY TRP SER TYR TYR SEQRES 8 A 265 ALA ALA THR ILE ARG LYS VAL GLN GLU VAL LYS GLY TYR SEQRES 9 A 265 THR LYS GLY GLY PRO GLY HIS GLU GLU PRO MET LEU VAL SEQRES 10 A 265 GLN SER TYR GLY TRP ASN ILE VAL ARG LEU LYS SER GLY SEQRES 11 A 265 VAL ASP VAL PHE HIS MET ALA ALA GLU PRO CYS ASP THR SEQRES 12 A 265 LEU LEU CYS ASP ILE GLY GLU SER SER SER SER PRO GLU SEQRES 13 A 265 VAL GLU GLU ALA ARG THR LEU ARG VAL LEU SER MET VAL SEQRES 14 A 265 GLY ASP TRP LEU GLU LYS ARG PRO GLY ALA PHE CYS ILE SEQRES 15 A 265 LYS VAL LEU CYS PRO TYR THR SER THR MET MET GLU THR SEQRES 16 A 265 LEU GLU ARG LEU GLN ARG ARG TYR GLY GLY GLY LEU VAL SEQRES 17 A 265 ARG VAL PRO LEU SER ARG ASN SER THR HIS GLU MET TYR SEQRES 18 A 265 TRP VAL SER GLY ALA LYS SER ASN THR ILE LYS SER VAL SEQRES 19 A 265 SER THR THR SER GLN LEU LEU LEU GLY ARG MET ASP GLY SEQRES 20 A 265 PRO ARG ARG PRO VAL LYS TYR GLU GLU ASP VAL ASN LEU SEQRES 21 A 265 GLY SER GLY THR ARG SEQRES 1 B 265 SER GLY GLY GLY THR GLY GLU THR LEU GLY GLU LYS TRP SEQRES 2 B 265 LYS ALA ARG LEU ASN GLN MET SER ALA LEU GLU PHE TYR SEQRES 3 B 265 SER TYR LYS LYS SER GLY ILE THR GLU VAL CYS ARG GLU SEQRES 4 B 265 GLU ALA ARG ARG ALA LEU LYS ASP GLY VAL ALA THR GLY SEQRES 5 B 265 GLY HIS ALA VAL SER ARG GLY SER ALA LYS LEU ARG TRP SEQRES 6 B 265 LEU VAL GLU ARG GLY TYR LEU GLN PRO TYR GLY LYS VAL SEQRES 7 B 265 ILE ASP LEU GLY CYS GLY ARG GLY GLY TRP SER TYR TYR SEQRES 8 B 265 ALA ALA THR ILE ARG LYS VAL GLN GLU VAL LYS GLY TYR SEQRES 9 B 265 THR LYS GLY GLY PRO GLY HIS GLU GLU PRO MET LEU VAL SEQRES 10 B 265 GLN SER TYR GLY TRP ASN ILE VAL ARG LEU LYS SER GLY SEQRES 11 B 265 VAL ASP VAL PHE HIS MET ALA ALA GLU PRO CYS ASP THR SEQRES 12 B 265 LEU LEU CYS ASP ILE GLY GLU SER SER SER SER PRO GLU SEQRES 13 B 265 VAL GLU GLU ALA ARG THR LEU ARG VAL LEU SER MET VAL SEQRES 14 B 265 GLY ASP TRP LEU GLU LYS ARG PRO GLY ALA PHE CYS ILE SEQRES 15 B 265 LYS VAL LEU CYS PRO TYR THR SER THR MET MET GLU THR SEQRES 16 B 265 LEU GLU ARG LEU GLN ARG ARG TYR GLY GLY GLY LEU VAL SEQRES 17 B 265 ARG VAL PRO LEU SER ARG ASN SER THR HIS GLU MET TYR SEQRES 18 B 265 TRP VAL SER GLY ALA LYS SER ASN THR ILE LYS SER VAL SEQRES 19 B 265 SER THR THR SER GLN LEU LEU LEU GLY ARG MET ASP GLY SEQRES 20 B 265 PRO ARG ARG PRO VAL LYS TYR GLU GLU ASP VAL ASN LEU SEQRES 21 B 265 GLY SER GLY THR ARG HET SFG A 301 49 HET CL A 302 1 HET SFG B 301 48 HET CL B 302 1 HETNAM SFG SINEFUNGIN HETNAM CL CHLORIDE ION HETSYN SFG ADENOSYL-ORNITHINE FORMUL 3 SFG 2(C15 H23 N7 O5) FORMUL 4 CL 2(CL 1-) FORMUL 7 HOH *327(H2 O) HELIX 1 AA1 THR A 7 ASN A 17 1 11 HELIX 2 AA2 SER A 20 LYS A 29 1 10 HELIX 3 AA3 ARG A 37 GLY A 47 1 11 HELIX 4 AA4 ARG A 57 ARG A 68 1 12 HELIX 5 AA5 GLY A 85 THR A 93 1 9 HELIX 6 AA6 GLY A 120 ASN A 122 5 3 HELIX 7 AA7 ASP A 131 MET A 135 5 5 HELIX 8 AA8 SER A 153 GLU A 173 1 21 HELIX 9 AA9 THR A 188 GLY A 203 1 16 HELIX 10 AB1 ASN A 228 ASP A 245 1 18 HELIX 11 AB2 THR B 7 MET B 19 1 13 HELIX 12 AB3 SER B 20 LYS B 29 1 10 HELIX 13 AB4 ARG B 57 ARG B 68 1 12 HELIX 14 AB5 GLY B 85 THR B 93 1 9 HELIX 15 AB6 GLY B 120 ASN B 122 5 3 HELIX 16 AB7 ASP B 131 MET B 135 5 5 HELIX 17 AB8 SER B 153 GLU B 173 1 21 HELIX 18 AB9 THR B 188 GLY B 203 1 16 HELIX 19 AC1 ASN B 228 ARG B 243 1 16 SHEET 1 AA1 2 THR A 33 VAL A 35 0 SHEET 2 AA1 2 LYS A 252 GLU A 254 1 O LYS A 252 N GLU A 34 SHEET 1 AA2 7 VAL A 124 LYS A 127 0 SHEET 2 AA2 7 VAL A 97 TYR A 103 1 N GLY A 102 O ARG A 125 SHEET 3 AA2 7 GLY A 75 LEU A 80 1 N VAL A 77 O GLU A 99 SHEET 4 AA2 7 THR A 142 CYS A 145 1 O LEU A 144 N ILE A 78 SHEET 5 AA2 7 ALA A 178 VAL A 183 1 O LYS A 182 N CYS A 145 SHEET 6 AA2 7 MET A 219 VAL A 222 -1 O TRP A 221 N ILE A 181 SHEET 7 AA2 7 GLY A 205 VAL A 207 -1 N VAL A 207 O TYR A 220 SHEET 1 AA3 2 THR B 33 CYS B 36 0 SHEET 2 AA3 2 LYS B 252 GLU B 255 1 O GLU B 254 N CYS B 36 SHEET 1 AA4 7 VAL B 124 LYS B 127 0 SHEET 2 AA4 7 VAL B 97 TYR B 103 1 N GLY B 102 O LYS B 127 SHEET 3 AA4 7 GLY B 75 LEU B 80 1 N VAL B 77 O GLU B 99 SHEET 4 AA4 7 THR B 142 CYS B 145 1 O LEU B 144 N LEU B 80 SHEET 5 AA4 7 ALA B 178 VAL B 183 1 O LYS B 182 N CYS B 145 SHEET 6 AA4 7 MET B 219 VAL B 222 -1 O MET B 219 N VAL B 183 SHEET 7 AA4 7 GLY B 205 VAL B 207 -1 N GLY B 205 O VAL B 222 SSBOND 1 CYS A 36 CYS B 36 1555 4555 2.05 SITE 1 AC1 21 SER A 56 GLY A 58 GLY A 81 CYS A 82 SITE 2 AC1 21 GLY A 83 GLY A 86 TRP A 87 THR A 104 SITE 3 AC1 21 LYS A 105 HIS A 110 GLU A 111 VAL A 130 SITE 4 AC1 21 ASP A 131 VAL A 132 PHE A 133 ASP A 146 SITE 5 AC1 21 CL A 302 HOH A 405 HOH A 453 HOH A 494 SITE 6 AC1 21 HOH A 508 SITE 1 AC2 2 GLY A 148 SFG A 301 SITE 1 AC3 20 SER B 56 GLY B 58 GLY B 81 CYS B 82 SITE 2 AC3 20 GLY B 83 GLY B 86 TRP B 87 THR B 104 SITE 3 AC3 20 LYS B 105 HIS B 110 GLU B 111 VAL B 130 SITE 4 AC3 20 ASP B 131 VAL B 132 PHE B 133 ASP B 146 SITE 5 AC3 20 HOH B 409 HOH B 425 HOH B 435 HOH B 474 SITE 1 AC4 1 GLY B 148 CRYST1 144.840 52.010 84.170 90.00 107.56 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006904 0.000000 0.002184 0.00000 SCALE2 0.000000 0.019227 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012461 0.00000