HEADER HYDROLASE 27-DEC-16 5MRV TITLE CRYSTAL STRUCTURE OF HUMAN CARBOXYPEPTIDASE O IN COMPLEX WITH NVCI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOXYPEPTIDASE O; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CPO; COMPND 5 EC: 3.4.17.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: METALLOCARBOXYPEPTIDASE INHIBITOR; COMPND 9 CHAIN: C; COMPND 10 SYNONYM: MCPI,CARBOXYPEPTIDASE INHIBITOR,NVCI; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: CARBOXYPEPTIDASE INHIBITOR OBTAINED FROM THE MARINE COMPND 13 SNAIL NERITA VERSICOLOR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CPO; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293 F; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PTRIEX-7 VECTOR; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: NERITA VERSICOLOR; SOURCE 14 ORGANISM_COMMON: FOUR-TOOTH NERITE; SOURCE 15 ORGANISM_TAXID: 159942; SOURCE 16 EXPRESSION_SYSTEM: KOMAGATAELLA PHAFFII GS115; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 644223 KEYWDS DIGESTIVE METALLOCARBOXYPEPTIDASE, FOOD DIGESTION, CARBOXYPEPTIDASE KEYWDS 2 INHIBITOR, BRUSH BORDER ENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.GARCIA-PARDO,M.C.GARCIA-GUERRERO,R.FERNANDEZ-ALVAREZ,P.LYONS, AUTHOR 2 F.X.AVILES,J.LORENZO,D.REVERTER REVDAT 4 17-JAN-24 5MRV 1 HETSYN REVDAT 3 29-JUL-20 5MRV 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 16-MAY-18 5MRV 1 JRNL REVDAT 1 17-JAN-18 5MRV 0 JRNL AUTH M.C.GARCIA-GUERRERO,J.GARCIA-PARDO,E.BERENGUER, JRNL AUTH 2 R.FERNANDEZ-ALVAREZ,G.B.BARFI,P.J.LYONS,F.X.AVILES,R.HUBER, JRNL AUTH 3 J.LORENZO,D.REVERTER JRNL TITL CRYSTAL STRUCTURE AND MECHANISM OF HUMAN CARBOXYPEPTIDASE O: JRNL TITL 2 INSIGHTS INTO ITS SPECIFIC ACTIVITY FOR ACIDIC RESIDUES. JRNL REF PROC. NATL. ACAD. SCI. V. 115 E3932 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29636417 JRNL DOI 10.1073/PNAS.1803685115 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 79833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 3961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.9779 - 5.6284 0.98 2844 135 0.1762 0.2020 REMARK 3 2 5.6284 - 4.4679 0.99 2778 148 0.1476 0.1699 REMARK 3 3 4.4679 - 3.9032 0.98 2731 133 0.1442 0.1384 REMARK 3 4 3.9032 - 3.5464 0.97 2687 142 0.1467 0.1613 REMARK 3 5 3.5464 - 3.2922 0.98 2707 146 0.1677 0.1769 REMARK 3 6 3.2922 - 3.0981 0.97 2697 152 0.1754 0.2068 REMARK 3 7 3.0981 - 2.9430 0.98 2740 121 0.1781 0.2029 REMARK 3 8 2.9430 - 2.8149 0.99 2740 130 0.1798 0.1832 REMARK 3 9 2.8149 - 2.7065 0.99 2747 137 0.1922 0.2108 REMARK 3 10 2.7065 - 2.6131 0.98 2715 152 0.1944 0.2018 REMARK 3 11 2.6131 - 2.5314 0.99 2714 144 0.1863 0.2602 REMARK 3 12 2.5314 - 2.4590 0.98 2711 148 0.1861 0.2280 REMARK 3 13 2.4590 - 2.3943 0.99 2707 148 0.1926 0.2076 REMARK 3 14 2.3943 - 2.3359 0.99 2772 149 0.1865 0.2205 REMARK 3 15 2.3359 - 2.2828 0.98 2725 141 0.1926 0.2458 REMARK 3 16 2.2828 - 2.2342 0.98 2666 120 0.1996 0.2218 REMARK 3 17 2.2342 - 2.1895 0.99 2652 168 0.1924 0.2471 REMARK 3 18 2.1895 - 2.1482 0.97 2689 163 0.2066 0.2353 REMARK 3 19 2.1482 - 2.1098 0.99 2723 147 0.2114 0.2438 REMARK 3 20 2.1098 - 2.0741 0.98 2692 142 0.2197 0.2596 REMARK 3 21 2.0741 - 2.0406 0.98 2701 141 0.2293 0.2305 REMARK 3 22 2.0406 - 2.0092 0.98 2715 135 0.2231 0.2557 REMARK 3 23 2.0092 - 1.9797 0.97 2658 129 0.2372 0.2595 REMARK 3 24 1.9797 - 1.9518 0.98 2704 124 0.2537 0.2974 REMARK 3 25 1.9518 - 1.9254 0.97 2686 150 0.2674 0.3276 REMARK 3 26 1.9254 - 1.9004 0.97 2662 143 0.2920 0.3451 REMARK 3 27 1.9004 - 1.8766 0.97 2652 135 0.3190 0.3341 REMARK 3 28 1.8766 - 1.8540 0.97 2657 138 0.3657 0.3975 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5660 REMARK 3 ANGLE : 0.960 7706 REMARK 3 CHIRALITY : 0.056 816 REMARK 3 PLANARITY : 0.006 983 REMARK 3 DIHEDRAL : 13.692 3326 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MRV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002875. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79948 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.854 REMARK 200 RESOLUTION RANGE LOW (A) : 64.984 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2PCU REMARK 200 REMARK 200 REMARK: MONOCLINIC CRYSTALS C 1 2 1 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROPS WERE PREPARED BY MIXING EQUAL REMARK 280 VOLUMES OF PROTEIN SOLUTION (CPO:NVCI MOLAR RATIO, 1:0.5) AT 5 REMARK 280 MG/ML (IN 5 MM TRIS-HCL PH 7.3, 100 MM NACL, 1 MM B- REMARK 280 MERCAPTOETANOL) AND RESERVOIR SOLUTION CONTAINNING HEPES PH 7.0, REMARK 280 200 MM AMMONIUM CHORIDE AND 20% PEG6000., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 75.05700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.07200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 75.05700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.07200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A -25 REMARK 465 VAL A -24 REMARK 465 GLN A -23 REMARK 465 ALA A -22 REMARK 465 SER A -21 REMARK 465 TRP A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 PRO A -17 REMARK 465 GLN A -16 REMARK 465 PHE A -15 REMARK 465 GLU A -14 REMARK 465 LYS A -13 REMARK 465 GLY A -12 REMARK 465 ALA A -11 REMARK 465 ASP A -10 REMARK 465 ASP A -9 REMARK 465 ASP A -8 REMARK 465 ASP A -7 REMARK 465 LYS A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 LYS A -1 REMARK 465 LEU A 0 REMARK 465 TYR A 1 REMARK 465 ASP A 2 REMARK 465 ARG A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 HIS A 8 REMARK 465 ARG A 9 REMARK 465 GLN A 10 REMARK 465 GLU A 11 REMARK 465 ILE A 12 REMARK 465 VAL A 13 REMARK 465 ASP A 14 REMARK 465 LYS A 15 REMARK 465 SER A 16 REMARK 465 VAL A 17 REMARK 465 SER A 18 REMARK 465 PRO A 19 REMARK 465 TRP A 20 REMARK 465 SER A 21 REMARK 465 LEU A 22 REMARK 465 GLU B -25 REMARK 465 VAL B -24 REMARK 465 GLN B -23 REMARK 465 ALA B -22 REMARK 465 SER B -21 REMARK 465 TRP B -20 REMARK 465 SER B -19 REMARK 465 HIS B -18 REMARK 465 PRO B -17 REMARK 465 GLN B -16 REMARK 465 PHE B -15 REMARK 465 GLU B -14 REMARK 465 LYS B -13 REMARK 465 GLY B -12 REMARK 465 ALA B -11 REMARK 465 ASP B -10 REMARK 465 ASP B -9 REMARK 465 ASP B -8 REMARK 465 ASP B -7 REMARK 465 LYS B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ASP B -3 REMARK 465 PRO B -2 REMARK 465 LYS B -1 REMARK 465 LEU B 0 REMARK 465 TYR B 1 REMARK 465 ASP B 2 REMARK 465 ARG B 3 REMARK 465 SER B 4 REMARK 465 LEU B 5 REMARK 465 ALA B 6 REMARK 465 GLN B 7 REMARK 465 HIS B 8 REMARK 465 ARG B 9 REMARK 465 GLN B 10 REMARK 465 GLU B 11 REMARK 465 ILE B 12 REMARK 465 VAL B 13 REMARK 465 ASP B 14 REMARK 465 LYS B 15 REMARK 465 SER B 16 REMARK 465 VAL B 17 REMARK 465 SER B 18 REMARK 465 PRO B 19 REMARK 465 TRP B 20 REMARK 465 SER B 21 REMARK 465 LEU B 22 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 689 O HOH A 744 1.96 REMARK 500 ND2 ASN A 167 O5 NAG A 404 1.97 REMARK 500 O HOH A 513 O HOH A 721 1.97 REMARK 500 O HOH B 721 O HOH B 725 1.99 REMARK 500 O HOH B 596 O HOH B 698 2.00 REMARK 500 O HOH B 708 O HOH B 723 2.02 REMARK 500 O HOH B 641 O HOH B 680 2.06 REMARK 500 O HOH A 588 O HOH A 714 2.10 REMARK 500 O HOH B 688 O HOH B 707 2.16 REMARK 500 O HOH B 519 O HOH B 699 2.17 REMARK 500 OE2 GLU B 192 O HOH B 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 703 O HOH B 683 3445 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 74 -176.82 -173.15 REMARK 500 THR A 141 -46.87 -137.22 REMARK 500 SER A 148 -167.28 -69.69 REMARK 500 LEU A 267 -84.66 -128.11 REMARK 500 ASP A 293 -145.00 -110.55 REMARK 500 THR B 141 -51.06 -135.93 REMARK 500 SER B 148 -164.15 -74.20 REMARK 500 CYS B 179 -16.18 -48.33 REMARK 500 ASP B 293 -145.15 -108.09 REMARK 500 HIS B 328 -26.55 -145.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 88 ND1 REMARK 620 2 GLU A 91 OE1 115.7 REMARK 620 3 GLU A 91 OE2 100.4 57.0 REMARK 620 4 HIS A 216 ND1 102.0 86.1 142.5 REMARK 620 5 ALA C 53 O 136.8 103.3 85.2 98.3 REMARK 620 6 ALA C 53 OXT 85.5 137.3 84.0 127.3 52.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 88 ND1 REMARK 620 2 GLU B 91 OE1 119.0 REMARK 620 3 GLU B 91 OE2 93.7 56.3 REMARK 620 4 HIS B 216 ND1 100.1 98.9 155.2 REMARK 620 N 1 2 3 DBREF 5MRV A 1 329 UNP Q8IVL8 CBPO_HUMAN 21 349 DBREF 5MRV B 1 329 UNP Q8IVL8 CBPO_HUMAN 21 349 DBREF 5MRV C 1 53 UNP P86912 MCPI_NERVS 1 53 SEQADV 5MRV GLU A -25 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV VAL A -24 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV GLN A -23 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV ALA A -22 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV SER A -21 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV TRP A -20 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV SER A -19 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV HIS A -18 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV PRO A -17 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV GLN A -16 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV PHE A -15 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV GLU A -14 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV LYS A -13 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV GLY A -12 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV ALA A -11 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV ASP A -10 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV ASP A -9 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV ASP A -8 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV ASP A -7 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV LYS A -6 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV VAL A -5 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV PRO A -4 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV ASP A -3 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV PRO A -2 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV LYS A -1 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV LEU A 0 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV ILE A 65 UNP Q8IVL8 MET 85 VARIANT SEQADV 5MRV ARG A 114 UNP Q8IVL8 SER 134 VARIANT SEQADV 5MRV GLU B -25 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV VAL B -24 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV GLN B -23 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV ALA B -22 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV SER B -21 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV TRP B -20 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV SER B -19 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV HIS B -18 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV PRO B -17 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV GLN B -16 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV PHE B -15 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV GLU B -14 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV LYS B -13 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV GLY B -12 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV ALA B -11 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV ASP B -10 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV ASP B -9 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV ASP B -8 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV ASP B -7 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV LYS B -6 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV VAL B -5 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV PRO B -4 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV ASP B -3 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV PRO B -2 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV LYS B -1 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV LEU B 0 UNP Q8IVL8 EXPRESSION TAG SEQADV 5MRV ILE B 65 UNP Q8IVL8 MET 85 VARIANT SEQADV 5MRV ARG B 114 UNP Q8IVL8 SER 134 VARIANT SEQRES 1 A 355 GLU VAL GLN ALA SER TRP SER HIS PRO GLN PHE GLU LYS SEQRES 2 A 355 GLY ALA ASP ASP ASP ASP LYS VAL PRO ASP PRO LYS LEU SEQRES 3 A 355 TYR ASP ARG SER LEU ALA GLN HIS ARG GLN GLU ILE VAL SEQRES 4 A 355 ASP LYS SER VAL SER PRO TRP SER LEU GLU THR TYR SER SEQRES 5 A 355 TYR ASN ILE TYR HIS PRO MET GLY GLU ILE TYR GLU TRP SEQRES 6 A 355 MET ARG GLU ILE SER GLU LYS TYR LYS GLU VAL VAL THR SEQRES 7 A 355 GLN HIS PHE LEU GLY VAL THR TYR GLU THR HIS PRO ILE SEQRES 8 A 355 TYR TYR LEU LYS ILE SER GLN PRO SER GLY ASN PRO LYS SEQRES 9 A 355 LYS ILE ILE TRP MET ASP CYS GLY ILE HIS ALA ARG GLU SEQRES 10 A 355 TRP ILE ALA PRO ALA PHE CYS GLN TRP PHE VAL LYS GLU SEQRES 11 A 355 ILE LEU GLN ASN HIS LYS ASP ASN SER ARG ILE ARG LYS SEQRES 12 A 355 LEU LEU ARG ASN LEU ASP PHE TYR VAL LEU PRO VAL LEU SEQRES 13 A 355 ASN ILE ASP GLY TYR ILE TYR THR TRP THR THR ASP ARG SEQRES 14 A 355 LEU TRP ARG LYS SER ARG SER PRO HIS ASN ASN GLY THR SEQRES 15 A 355 CYS PHE GLY THR ASP LEU ASN ARG ASN PHE ASN ALA SER SEQRES 16 A 355 TRP CYS SER ILE GLY ALA SER ARG ASN CYS GLN ASP GLN SEQRES 17 A 355 THR PHE CYS GLY THR GLY PRO VAL SER GLU PRO GLU THR SEQRES 18 A 355 LYS ALA VAL ALA SER PHE ILE GLU SER LYS LYS ASP ASP SEQRES 19 A 355 ILE LEU CYS PHE LEU THR MET HIS SER TYR GLY GLN LEU SEQRES 20 A 355 ILE LEU THR PRO TYR GLY TYR THR LYS ASN LYS SER SER SEQRES 21 A 355 ASN HIS PRO GLU MET ILE GLN VAL GLY GLN LYS ALA ALA SEQRES 22 A 355 ASN ALA LEU LYS ALA LYS TYR GLY THR ASN TYR ARG VAL SEQRES 23 A 355 GLY SER SER ALA ASP ILE LEU TYR ALA SER SER GLY SER SEQRES 24 A 355 SER ARG ASP TRP ALA ARG ASP ILE GLY ILE PRO PHE SER SEQRES 25 A 355 TYR THR PHE GLU LEU ARG ASP SER GLY THR TYR GLY PHE SEQRES 26 A 355 VAL LEU PRO GLU ALA GLN ILE GLN PRO THR CYS GLU GLU SEQRES 27 A 355 THR MET GLU ALA VAL LEU SER VAL LEU ASP ASP VAL TYR SEQRES 28 A 355 ALA LYS HIS TRP SEQRES 1 B 355 GLU VAL GLN ALA SER TRP SER HIS PRO GLN PHE GLU LYS SEQRES 2 B 355 GLY ALA ASP ASP ASP ASP LYS VAL PRO ASP PRO LYS LEU SEQRES 3 B 355 TYR ASP ARG SER LEU ALA GLN HIS ARG GLN GLU ILE VAL SEQRES 4 B 355 ASP LYS SER VAL SER PRO TRP SER LEU GLU THR TYR SER SEQRES 5 B 355 TYR ASN ILE TYR HIS PRO MET GLY GLU ILE TYR GLU TRP SEQRES 6 B 355 MET ARG GLU ILE SER GLU LYS TYR LYS GLU VAL VAL THR SEQRES 7 B 355 GLN HIS PHE LEU GLY VAL THR TYR GLU THR HIS PRO ILE SEQRES 8 B 355 TYR TYR LEU LYS ILE SER GLN PRO SER GLY ASN PRO LYS SEQRES 9 B 355 LYS ILE ILE TRP MET ASP CYS GLY ILE HIS ALA ARG GLU SEQRES 10 B 355 TRP ILE ALA PRO ALA PHE CYS GLN TRP PHE VAL LYS GLU SEQRES 11 B 355 ILE LEU GLN ASN HIS LYS ASP ASN SER ARG ILE ARG LYS SEQRES 12 B 355 LEU LEU ARG ASN LEU ASP PHE TYR VAL LEU PRO VAL LEU SEQRES 13 B 355 ASN ILE ASP GLY TYR ILE TYR THR TRP THR THR ASP ARG SEQRES 14 B 355 LEU TRP ARG LYS SER ARG SER PRO HIS ASN ASN GLY THR SEQRES 15 B 355 CYS PHE GLY THR ASP LEU ASN ARG ASN PHE ASN ALA SER SEQRES 16 B 355 TRP CYS SER ILE GLY ALA SER ARG ASN CYS GLN ASP GLN SEQRES 17 B 355 THR PHE CYS GLY THR GLY PRO VAL SER GLU PRO GLU THR SEQRES 18 B 355 LYS ALA VAL ALA SER PHE ILE GLU SER LYS LYS ASP ASP SEQRES 19 B 355 ILE LEU CYS PHE LEU THR MET HIS SER TYR GLY GLN LEU SEQRES 20 B 355 ILE LEU THR PRO TYR GLY TYR THR LYS ASN LYS SER SER SEQRES 21 B 355 ASN HIS PRO GLU MET ILE GLN VAL GLY GLN LYS ALA ALA SEQRES 22 B 355 ASN ALA LEU LYS ALA LYS TYR GLY THR ASN TYR ARG VAL SEQRES 23 B 355 GLY SER SER ALA ASP ILE LEU TYR ALA SER SER GLY SER SEQRES 24 B 355 SER ARG ASP TRP ALA ARG ASP ILE GLY ILE PRO PHE SER SEQRES 25 B 355 TYR THR PHE GLU LEU ARG ASP SER GLY THR TYR GLY PHE SEQRES 26 B 355 VAL LEU PRO GLU ALA GLN ILE GLN PRO THR CYS GLU GLU SEQRES 27 B 355 THR MET GLU ALA VAL LEU SER VAL LEU ASP ASP VAL TYR SEQRES 28 B 355 ALA LYS HIS TRP SEQRES 1 C 53 PHE HIS VAL PRO ASP ASP ARG PRO CYS ILE ASN PRO GLY SEQRES 2 C 53 ARG CYS PRO LEU VAL PRO ASP ALA THR CYS THR PHE VAL SEQRES 3 C 53 CYS LYS ALA ALA ASP ASN ASP PHE GLY TYR GLU CYS GLN SEQRES 4 C 53 HIS VAL TRP THR PHE GLU GLY GLN ARG VAL GLY CYS TYR SEQRES 5 C 53 ALA HET ZN A 401 1 HET NAG A 402 14 HET NAG A 403 14 HET NAG A 404 14 HET ZN B 401 1 HET NAG B 402 14 HET NAG B 403 14 HETNAM ZN ZINC ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 ZN 2(ZN 2+) FORMUL 5 NAG 5(C8 H15 N O6) FORMUL 11 HOH *521(H2 O) HELIX 1 AA1 PRO A 32 TYR A 47 1 16 HELIX 2 AA2 TRP A 92 HIS A 109 1 18 HELIX 3 AA3 ASN A 112 ASN A 121 1 10 HELIX 4 AA4 ASN A 131 THR A 141 1 11 HELIX 5 AA5 ASP A 161 ASN A 165 5 5 HELIX 6 AA6 GLU A 192 LYS A 206 1 15 HELIX 7 AA7 ASN A 235 GLY A 255 1 21 HELIX 8 AA8 SER A 263 LEU A 267 1 5 HELIX 9 AA9 SER A 273 ILE A 281 1 9 HELIX 10 AB1 PRO A 302 ALA A 304 5 3 HELIX 11 AB2 GLN A 305 LYS A 327 1 23 HELIX 12 AB3 PRO B 32 TYR B 47 1 16 HELIX 13 AB4 TRP B 92 HIS B 109 1 18 HELIX 14 AB5 ASN B 112 ASN B 121 1 10 HELIX 15 AB6 ASN B 131 THR B 141 1 11 HELIX 16 AB7 ASP B 161 ASN B 165 5 5 HELIX 17 AB8 GLU B 192 LYS B 205 1 14 HELIX 18 AB9 ASN B 235 GLY B 255 1 21 HELIX 19 AC1 SER B 263 LEU B 267 1 5 HELIX 20 AC2 SER B 273 ILE B 281 1 9 HELIX 21 AC3 PRO B 302 ALA B 304 5 3 HELIX 22 AC4 GLN B 305 LYS B 327 1 23 SHEET 1 AA1 8 VAL A 51 VAL A 58 0 SHEET 2 AA1 8 PRO A 64 ILE A 70 -1 O ILE A 65 N LEU A 56 SHEET 3 AA1 8 LEU A 122 LEU A 127 -1 O PHE A 124 N ILE A 70 SHEET 4 AA1 8 LYS A 79 CYS A 85 1 N ILE A 81 O TYR A 125 SHEET 5 AA1 8 ILE A 209 HIS A 216 1 O MET A 215 N ASP A 84 SHEET 6 AA1 8 PHE A 285 GLU A 290 1 O PHE A 289 N HIS A 216 SHEET 7 AA1 8 LEU A 221 THR A 224 -1 N LEU A 223 O THR A 288 SHEET 8 AA1 8 ARG A 259 SER A 262 1 O ARG A 259 N ILE A 222 SHEET 1 AA2 2 PRO A 151 HIS A 152 0 SHEET 2 AA2 2 CYS A 157 PHE A 158 -1 O CYS A 157 N HIS A 152 SHEET 1 AA3 8 VAL B 51 VAL B 58 0 SHEET 2 AA3 8 PRO B 64 ILE B 70 -1 O ILE B 65 N GLY B 57 SHEET 3 AA3 8 LEU B 122 LEU B 127 -1 O VAL B 126 N LEU B 68 SHEET 4 AA3 8 LYS B 79 CYS B 85 1 N ILE B 81 O TYR B 125 SHEET 5 AA3 8 ILE B 209 HIS B 216 1 O LEU B 213 N TRP B 82 SHEET 6 AA3 8 PHE B 285 GLU B 290 1 O PHE B 289 N HIS B 216 SHEET 7 AA3 8 LEU B 221 THR B 224 -1 N LEU B 223 O THR B 288 SHEET 8 AA3 8 ARG B 259 SER B 262 1 O ARG B 259 N ILE B 222 SHEET 1 AA4 2 PRO B 151 HIS B 152 0 SHEET 2 AA4 2 CYS B 157 PHE B 158 -1 O CYS B 157 N HIS B 152 SHEET 1 AA5 4 ARG C 7 PRO C 8 0 SHEET 2 AA5 4 THR C 22 ALA C 29 -1 O PHE C 25 N ARG C 7 SHEET 3 AA5 4 TYR C 36 PHE C 44 -1 O THR C 43 N THR C 22 SHEET 4 AA5 4 GLN C 47 ARG C 48 -1 O GLN C 47 N PHE C 44 SSBOND 1 CYS A 85 CYS A 98 1555 1555 2.03 SSBOND 2 CYS A 157 CYS A 179 1555 1555 2.23 SSBOND 3 CYS A 171 CYS A 185 1555 1555 2.71 SSBOND 4 CYS B 85 CYS B 98 1555 1555 2.02 SSBOND 5 CYS B 157 CYS B 179 1555 1555 2.81 SSBOND 6 CYS B 171 CYS B 185 1555 1555 2.60 SSBOND 7 CYS C 9 CYS C 23 1555 1555 2.07 SSBOND 8 CYS C 15 CYS C 51 1555 1555 2.05 SSBOND 9 CYS C 27 CYS C 38 1555 1555 2.21 LINK ND2 ASN A 154 C1 NAG A 402 1555 1555 1.44 LINK ND2 ASN A 167 C1 NAG A 404 1555 1555 1.39 LINK ND2 ASN A 231 C1 NAG A 403 1555 1555 1.43 LINK ND2 ASN B 167 C1 NAG B 402 1555 1555 1.48 LINK ND2 ASN B 231 C1 NAG B 403 1555 1555 1.44 LINK ND1 HIS A 88 ZN ZN A 401 1555 1555 2.11 LINK OE1 GLU A 91 ZN ZN A 401 1555 1555 2.42 LINK OE2 GLU A 91 ZN ZN A 401 1555 1555 2.08 LINK ND1 HIS A 216 ZN ZN A 401 1555 1555 2.03 LINK ZN ZN A 401 O ALA C 53 1555 1555 2.28 LINK ZN ZN A 401 OXT ALA C 53 1555 1555 2.55 LINK ND1 HIS B 88 ZN ZN B 401 1555 1555 2.10 LINK OE1 GLU B 91 ZN ZN B 401 1555 1555 2.19 LINK OE2 GLU B 91 ZN ZN B 401 1555 1555 2.45 LINK ND1 HIS B 216 ZN ZN B 401 1555 1555 2.20 CISPEP 1 SER A 217 TYR A 218 0 -4.09 CISPEP 2 PRO A 225 TYR A 226 0 1.49 CISPEP 3 ARG A 292 ASP A 293 0 -0.90 CISPEP 4 SER B 217 TYR B 218 0 -4.21 CISPEP 5 PRO B 225 TYR B 226 0 0.70 CISPEP 6 ARG B 292 ASP B 293 0 -2.35 CRYST1 150.114 72.144 90.187 90.00 94.66 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006662 0.000000 0.000543 0.00000 SCALE2 0.000000 0.013861 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011125 0.00000