HEADER HYDROLASE 09-JAN-17 5MTC TITLE CRYSTAL STRUCTURE OF PDF FROM THE VIBRIO PARAHAEMOLYTICUS TITLE 2 BACTERIOPHAGE VP16T - CRYSTAL FORM I COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN ORF60T; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PHAGE VP16T; SOURCE 3 ORGANISM_TAXID: 238892; SOURCE 4 GENE: ORF60T; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PAL421TR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PBAD/MYC-HISA KEYWDS PDF, PEPTIDE DEFORMYLASE, TYPE 1B, BACTERIOPHAGE VP16T, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.FIEULAINE,R.GRZELA,C.GIGLIONE,T.MEINNEL REVDAT 2 17-JAN-24 5MTC 1 LINK REVDAT 1 20-SEP-17 5MTC 0 JRNL AUTH R.GRZELA,J.NUSBAUM,S.FIEULAINE,F.LAVECCHIA,W.V.BIENVENUT, JRNL AUTH 2 C.DIAN,T.MEINNEL,C.GIGLIONE JRNL TITL THE C-TERMINAL RESIDUE OF PHAGE VP16 PDF, THE SMALLEST JRNL TITL 2 PEPTIDE DEFORMYLASE, ACTS AS AN OFFSET ELEMENT LOCKING THE JRNL TITL 3 ACTIVE CONFORMATION. JRNL REF SCI REP V. 7 11041 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28887476 JRNL DOI 10.1038/S41598-017-11329-3 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1751 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2390 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2034 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : -0.44000 REMARK 3 B12 (A**2) : 0.15000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.125 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2071 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2816 ; 1.296 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 5.402 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;37.833 ;24.533 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 345 ;11.999 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;14.595 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 338 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1521 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 963 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1442 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 193 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.028 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.209 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.159 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1396 ; 0.711 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2186 ; 1.125 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 750 ; 2.052 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 630 ; 3.116 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): 34.1640 -13.0020 -26.0940 REMARK 3 T TENSOR REMARK 3 T11: -0.0845 T22: -0.1520 REMARK 3 T33: -0.2203 T12: -0.0083 REMARK 3 T13: 0.0217 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 2.0392 L22: 2.2881 REMARK 3 L33: 2.3109 L12: 0.3223 REMARK 3 L13: 0.4766 L23: 0.0847 REMARK 3 S TENSOR REMARK 3 S11: 0.0899 S12: -0.0744 S13: 0.0940 REMARK 3 S21: 0.0862 S22: -0.1181 S23: 0.0032 REMARK 3 S31: -0.2051 S32: 0.0476 S33: 0.0282 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 137 REMARK 3 ORIGIN FOR THE GROUP (A): 49.7770 -17.3090 -49.5080 REMARK 3 T TENSOR REMARK 3 T11: -0.1470 T22: -0.1066 REMARK 3 T33: -0.2159 T12: 0.0214 REMARK 3 T13: 0.0014 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 1.8132 L22: 2.0984 REMARK 3 L33: 2.3231 L12: 0.0136 REMARK 3 L13: 0.5996 L23: -0.3992 REMARK 3 S TENSOR REMARK 3 S11: -0.0203 S12: -0.0199 S13: 0.0256 REMARK 3 S21: -0.0395 S22: 0.0365 S23: -0.0419 REMARK 3 S31: -0.1246 S32: -0.0695 S33: -0.0162 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200002983. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979783 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35064 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.970 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 20.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.93 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.75100 REMARK 200 FOR SHELL : 3.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1LRY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 38% MPD 100MM CAPS, PH 10.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.68667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.84333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.84333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 85.68667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 TYR A 80 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 ASP B 7 CG OD1 OD2 REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 96 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 6 90.58 13.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 202 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 1 N REMARK 620 2 MET A 1 O 79.4 REMARK 620 3 HOH A 339 O 94.5 81.9 REMARK 620 4 HOH A 358 O 163.8 86.9 74.8 REMARK 620 5 HOH A 365 O 92.5 89.1 167.4 96.0 REMARK 620 6 HIS B 74 NE2 97.6 176.3 96.2 95.7 93.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 203 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 12 NE2 REMARK 620 2 HOH A 318 O 97.4 REMARK 620 3 ASP B 26 OD1 125.0 27.7 REMARK 620 4 ASP B 30 OD2 121.1 23.9 3.9 REMARK 620 5 HOH B 311 O 171.7 88.9 61.2 65.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 85 SG REMARK 620 2 HIS A 127 NE2 120.5 REMARK 620 3 HIS A 131 NE2 104.7 106.3 REMARK 620 4 HOH A 303 O 122.0 100.7 99.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 85 SG REMARK 620 2 HIS B 127 NE2 119.6 REMARK 620 3 HIS B 131 NE2 103.6 107.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 DBREF 5MTC A 1 137 UNP Q6VT21 Q6VT21_9CAUD 1 137 DBREF 5MTC B 1 137 UNP Q6VT21 Q6VT21_9CAUD 1 137 SEQRES 1 A 137 MET LYS ILE LEU LYS ASP ASP ALA PRO GLU LEU HIS ALA SEQRES 2 A 137 ILE ALA ALA GLU VAL PRO HIS GLY GLU ASP VAL LYS ASP SEQRES 3 A 137 LEU VAL LEU ASP MET THR ALA ALA MET THR ALA ALA GLY SEQRES 4 A 137 GLY ILE GLY LEU ALA GLY ASN GLN VAL GLY VAL LEU LYS SEQRES 5 A 137 ARG ILE ILE VAL LEU ARG CYS PRO THR PHE LYS GLY CYS SEQRES 6 A 137 VAL ILE ASN PRO ILE ILE THR ARG HIS THR ASP GLY HIS SEQRES 7 A 137 VAL TYR SER PRO GLU GLY CYS LEU SER TYR PRO GLY LYS SEQRES 8 A 137 THR VAL ALA LYS LYS ARG ARG ASN LYS VAL VAL VAL GLU SEQRES 9 A 137 GLY TYR ASP MET ASP TRP GLN PRO ILE THR ILE ALA ALA SEQRES 10 A 137 LYS GLY LEU THR ALA PHE CYS LEU GLN HIS GLU ILE ASP SEQRES 11 A 137 HIS LEU ASN GLY VAL THR ILE SEQRES 1 B 137 MET LYS ILE LEU LYS ASP ASP ALA PRO GLU LEU HIS ALA SEQRES 2 B 137 ILE ALA ALA GLU VAL PRO HIS GLY GLU ASP VAL LYS ASP SEQRES 3 B 137 LEU VAL LEU ASP MET THR ALA ALA MET THR ALA ALA GLY SEQRES 4 B 137 GLY ILE GLY LEU ALA GLY ASN GLN VAL GLY VAL LEU LYS SEQRES 5 B 137 ARG ILE ILE VAL LEU ARG CYS PRO THR PHE LYS GLY CYS SEQRES 6 B 137 VAL ILE ASN PRO ILE ILE THR ARG HIS THR ASP GLY HIS SEQRES 7 B 137 VAL TYR SER PRO GLU GLY CYS LEU SER TYR PRO GLY LYS SEQRES 8 B 137 THR VAL ALA LYS LYS ARG ARG ASN LYS VAL VAL VAL GLU SEQRES 9 B 137 GLY TYR ASP MET ASP TRP GLN PRO ILE THR ILE ALA ALA SEQRES 10 B 137 LYS GLY LEU THR ALA PHE CYS LEU GLN HIS GLU ILE ASP SEQRES 11 B 137 HIS LEU ASN GLY VAL THR ILE HET ZN A 201 1 HET NI A 202 1 HET NI A 203 1 HET ZN B 201 1 HETNAM ZN ZINC ION HETNAM NI NICKEL (II) ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 NI 2(NI 2+) FORMUL 7 HOH *113(H2 O) HELIX 1 AA1 ALA A 8 ALA A 13 5 6 HELIX 2 AA2 VAL A 24 ALA A 38 1 15 HELIX 3 AA3 ASN A 46 GLY A 49 5 4 HELIX 4 AA4 GLY A 119 ASN A 133 1 15 HELIX 5 AA5 ALA B 8 ALA B 13 5 6 HELIX 6 AA6 VAL B 24 ALA B 38 1 15 HELIX 7 AA7 ASN B 46 GLY B 49 5 4 HELIX 8 AA8 GLY B 119 ASN B 133 1 15 SHEET 1 AA1 5 GLY A 42 ALA A 44 0 SHEET 2 AA1 5 ILE A 54 CYS A 59 -1 O VAL A 56 N LEU A 43 SHEET 3 AA1 5 PHE A 62 HIS A 74 -1 O PHE A 62 N CYS A 59 SHEET 4 AA1 5 LYS A 100 TYR A 106 -1 O TYR A 106 N ILE A 67 SHEET 5 AA1 5 PRO A 112 LYS A 118 -1 O ILE A 115 N VAL A 103 SHEET 1 AA2 2 VAL A 79 GLU A 83 0 SHEET 2 AA2 2 VAL A 93 ARG A 97 -1 O LYS A 95 N SER A 81 SHEET 1 AA3 5 GLY B 42 ALA B 44 0 SHEET 2 AA3 5 ILE B 54 CYS B 59 -1 O VAL B 56 N LEU B 43 SHEET 3 AA3 5 PHE B 62 HIS B 74 -1 O PHE B 62 N CYS B 59 SHEET 4 AA3 5 LYS B 100 TYR B 106 -1 O TYR B 106 N ILE B 67 SHEET 5 AA3 5 PRO B 112 LYS B 118 -1 O ILE B 115 N VAL B 103 SHEET 1 AA4 2 VAL B 79 GLU B 83 0 SHEET 2 AA4 2 VAL B 93 ARG B 97 -1 O LYS B 95 N SER B 81 LINK N MET A 1 NI NI A 202 1555 1555 2.21 LINK O MET A 1 NI NI A 202 1555 1555 2.10 LINK NE2 HIS A 12 NI NI A 203 1555 1555 2.04 LINK SG CYS A 85 ZN ZN A 201 1555 1555 2.27 LINK NE2 HIS A 127 ZN ZN A 201 1555 1555 2.02 LINK NE2 HIS A 131 ZN ZN A 201 1555 1555 2.06 LINK ZN ZN A 201 O HOH A 303 1555 1555 1.99 LINK NI NI A 202 O HOH A 339 1555 1555 2.19 LINK NI NI A 202 O HOH A 358 1555 1555 2.22 LINK NI NI A 202 O HOH A 365 1555 1555 2.24 LINK NI NI A 202 NE2 HIS B 74 1555 1555 2.15 LINK NI NI A 203 O HOH A 318 1555 1555 2.21 LINK NI NI A 203 OD1 ASP B 26 2544 1555 2.42 LINK NI NI A 203 OD2 ASP B 30 2544 1555 2.13 LINK NI NI A 203 O HOH B 311 1555 3655 2.21 LINK SG CYS B 85 ZN ZN B 201 1555 1555 2.27 LINK NE2 HIS B 127 ZN ZN B 201 1555 1555 2.08 LINK NE2 HIS B 131 ZN ZN B 201 1555 1555 2.06 SITE 1 AC1 5 GLN A 47 CYS A 85 HIS A 127 HIS A 131 SITE 2 AC1 5 HOH A 303 SITE 1 AC2 5 MET A 1 HOH A 339 HOH A 358 HOH A 365 SITE 2 AC2 5 HIS B 74 SITE 1 AC3 5 HIS A 12 HOH A 318 ASP B 26 ASP B 30 SITE 2 AC3 5 HOH B 311 SITE 1 AC4 4 GLN B 47 CYS B 85 HIS B 127 HIS B 131 CRYST1 64.730 64.730 128.530 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015449 0.008919 0.000000 0.00000 SCALE2 0.000000 0.017839 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007780 0.00000