data_5MVB # _entry.id 5MVB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5MVB pdb_00005mvb 10.2210/pdb5mvb/pdb WWPDB D_1200001741 ? ? BMRB 34086 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution structure of a human G-Quadruplex hybrid-2 form in complex with a Gold-ligand' _pdbx_database_related.db_id 34086 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5MVB _pdbx_database_status.recvd_initial_deposition_date 2017-01-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wirmer-Bartoschek, J.' 1 ? 'Jonker, H.R.A.' 2 ? 'Bendel, L.E.' 3 ? 'Gruen, T.' 4 ? 'Bazzicalupi, C.' 5 ? 'Messori, L.' 6 ? 'Gratteri, P.' 7 ? 'Schwalbe, H.' 8 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Angew. Chem. Int. Ed. Engl.' _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 56 _citation.language ? _citation.page_first 7102 _citation.page_last 7106 _citation.title 'Solution NMR Structure of a Ligand/Hybrid-2-G-Quadruplex Complex Reveals Rearrangements that Affect Ligand Binding.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.201702135 _citation.pdbx_database_id_PubMed 28524432 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wirmer-Bartoschek, J.' 1 ? primary 'Bendel, L.E.' 2 ? primary 'Jonker, H.R.A.' 3 ? primary 'Grun, J.T.' 4 ? primary 'Papi, F.' 5 ? primary 'Bazzicalupi, C.' 6 ? primary 'Messori, L.' 7 ? primary 'Gratteri, P.' 8 ? primary 'Schwalbe, H.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA (26-MER)' 8200.269 1 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 3 non-polymer syn "bis(m2-Oxo)-bis(2-methyl-2,2'-bipyridine)-di-gold(iii)" 794.406 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT) (DA)(DG)(DG)(DG)(DT)(DT) ; _entity_poly.pdbx_seq_one_letter_code_can TTAGGGTTAGGGTTAGGGTTAGGGTT _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DA n 1 4 DG n 1 5 DG n 1 6 DG n 1 7 DT n 1 8 DT n 1 9 DA n 1 10 DG n 1 11 DG n 1 12 DG n 1 13 DT n 1 14 DT n 1 15 DA n 1 16 DG n 1 17 DG n 1 18 DG n 1 19 DT n 1 20 DT n 1 21 DA n 1 22 DG n 1 23 DG n 1 24 DG n 1 25 DT n 1 26 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 26 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5MVB _struct_ref.pdbx_db_accession 5MVB _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5MVB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 26 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5MVB _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 26 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AUZ non-polymer . "bis(m2-Oxo)-bis(2-methyl-2,2'-bipyridine)-di-gold(iii)" ? 'C24 H24 Au2 N4 O2 4' 794.406 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D NOESY' 2 isotropic 2 2 2 '2D NOESY' 2 isotropic 3 1 1 '2D COSY' 1 isotropic 4 2 2 '2D COSY' 1 isotropic 5 2 2 '2D 1H-13C HSQC aliphatic' 2 isotropic 6 2 2 '2D 1H-13C HSQC aromatic' ? isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 mbar ambient 7 95 ? ? mM conditions_H2O ? pH ? ? K 2 298 mbar ambient 7 95 ? ? mM conditions_D2O ? pH ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1 mM DNA 26mer, 70 mM potassium chloride, 25 mM KPi, 0.3 mM DSS, 1.3 mM Auoxo6, 93% H2O/ 7%DMSO-d6' '93% H2O/ 7%DMSO-d6' H2O solution ? 2 '1 mM DNA 26mer, 70 mM potassium chloride, 25 mM KPi, 0.3 mM DSS, 1.3 mM Auoxo6, 93% D2O / 7% DMSO-d6' '93% D2O / 7% DMSO-d6' D2O solution ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE III' ? Bruker 600 cryoprobe 2 AVANCE ? Bruker 700 cryoprobe # _pdbx_nmr_refine.entry_id 5MVB _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'simulated annealing with cartesian angle dynamics; refinement in explicit water' _pdbx_nmr_refine.software_ordinal 6 # _pdbx_nmr_ensemble.entry_id 5MVB _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5MVB _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin 3.2 'Bruker Biospin' 2 processing TopSpin 3.2 'Bruker Biospin' 3 'chemical shift assignment' Sparky 3.114 'Goddard and Kneller' 4 'peak picking' Sparky 3.114 'Goddard and Kneller' 5 'data analysis' Sparky 3.114 'Goddard and Kneller' 6 refinement ARIA '1.2 HJ development version' ;Linge, O'Donoghue and Nilges ; 7 'structure calculation' ARIA '1.2 HJ development version' ;Linge, O'Donoghue and Nilges ; 8 'structure calculation' CNS 1.1 'Brunger, Adams, Clore, Gros, Nilges and Read' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5MVB _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5MVB _struct.title 'Solution structure of a human G-Quadruplex hybrid-2 form in complex with a Gold-ligand.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5MVB _struct_keywords.text 'G-Quadruplex hybrid, 2 Auoxo6, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 4 O6 ? ? ? 1_555 B K . K ? ? A DG 4 A K 101 1_555 ? ? ? ? ? ? ? 2.445 ? ? metalc2 metalc ? ? A DG 5 O6 ? ? ? 1_555 B K . K ? ? A DG 5 A K 101 1_555 ? ? ? ? ? ? ? 3.484 ? ? metalc3 metalc ? ? A DG 5 O6 ? ? ? 1_555 C K . K ? ? A DG 5 A K 102 1_555 ? ? ? ? ? ? ? 3.418 ? ? metalc4 metalc ? ? A DG 6 O6 ? ? ? 1_555 C K . K ? ? A DG 6 A K 102 1_555 ? ? ? ? ? ? ? 2.698 ? ? metalc5 metalc ? ? A DG 10 O6 ? ? ? 1_555 C K . K ? ? A DG 10 A K 102 1_555 ? ? ? ? ? ? ? 2.331 ? ? metalc6 metalc ? ? A DG 11 O6 ? ? ? 1_555 B K . K ? ? A DG 11 A K 101 1_555 ? ? ? ? ? ? ? 2.896 ? ? metalc7 metalc ? ? A DG 11 O6 ? ? ? 1_555 C K . K ? ? A DG 11 A K 102 1_555 ? ? ? ? ? ? ? 3.474 ? ? metalc8 metalc ? ? A DG 12 O6 ? ? ? 1_555 B K . K ? ? A DG 12 A K 101 1_555 ? ? ? ? ? ? ? 2.592 ? ? metalc9 metalc ? ? A DG 16 O6 ? ? ? 1_555 B K . K ? ? A DG 16 A K 101 1_555 ? ? ? ? ? ? ? 2.487 ? ? metalc10 metalc ? ? A DG 17 O6 ? ? ? 1_555 B K . K ? ? A DG 17 A K 101 1_555 ? ? ? ? ? ? ? 2.506 ? ? metalc11 metalc ? ? A DG 17 O6 ? ? ? 1_555 C K . K ? ? A DG 17 A K 102 1_555 ? ? ? ? ? ? ? 3.470 ? ? metalc12 metalc ? ? A DG 18 O6 ? ? ? 1_555 C K . K ? ? A DG 18 A K 102 1_555 ? ? ? ? ? ? ? 2.654 ? ? metalc13 metalc ? ? A DG 22 O6 ? ? ? 1_555 B K . K ? ? A DG 22 A K 101 1_555 ? ? ? ? ? ? ? 2.374 ? ? metalc14 metalc ? ? A DG 23 O6 ? ? ? 1_555 B K . K ? ? A DG 23 A K 101 1_555 ? ? ? ? ? ? ? 3.454 ? ? metalc15 metalc ? ? A DG 23 O6 ? ? ? 1_555 C K . K ? ? A DG 23 A K 102 1_555 ? ? ? ? ? ? ? 3.417 ? ? metalc16 metalc ? ? A DG 24 O6 ? ? ? 1_555 C K . K ? ? A DG 24 A K 102 1_555 ? ? ? ? ? ? ? 2.390 ? ? hydrog1 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 12 N2 ? ? A DG 4 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 12 N1 ? ? A DG 4 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 22 O6 ? ? A DG 4 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 22 N7 ? ? A DG 4 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 11 O6 ? ? A DG 5 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 11 N7 ? ? A DG 5 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 5 N7 ? ? ? 1_555 A DG 23 N2 ? ? A DG 5 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DG 23 N1 ? ? A DG 5 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 6 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 6 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 6 N7 ? ? ? 1_555 A DG 24 N2 ? ? A DG 6 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DG 24 N1 ? ? A DG 6 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 18 O6 ? ? A DG 10 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 18 N7 ? ? A DG 10 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DG 17 O6 ? ? A DG 11 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DG 17 N7 ? ? A DG 11 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 12 N7 ? ? ? 1_555 A DG 16 N2 ? ? A DG 12 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 12 O6 ? ? ? 1_555 A DG 16 N1 ? ? A DG 12 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 16 N7 ? ? ? 1_555 A DG 22 N2 ? ? A DG 16 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 16 O6 ? ? ? 1_555 A DG 22 N1 ? ? A DG 16 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 17 N1 ? ? ? 1_555 A DG 23 O6 ? ? A DG 17 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 17 N2 ? ? ? 1_555 A DG 23 N7 ? ? A DG 17 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 18 N1 ? ? ? 1_555 A DG 24 O6 ? ? A DG 18 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 18 N2 ? ? ? 1_555 A DG 24 N7 ? ? A DG 18 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 101 ? 8 'binding site for residue K A 101' AC2 Software A K 102 ? 8 'binding site for residue K A 102' AC3 Software A AUZ 103 ? 6 'binding site for residue AUZ A 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DG A 4 ? DG A 4 . ? 1_555 ? 2 AC1 8 DG A 5 ? DG A 5 . ? 1_555 ? 3 AC1 8 DG A 11 ? DG A 11 . ? 1_555 ? 4 AC1 8 DG A 12 ? DG A 12 . ? 1_555 ? 5 AC1 8 DG A 16 ? DG A 16 . ? 1_555 ? 6 AC1 8 DG A 17 ? DG A 17 . ? 1_555 ? 7 AC1 8 DG A 22 ? DG A 22 . ? 1_555 ? 8 AC1 8 DG A 23 ? DG A 23 . ? 1_555 ? 9 AC2 8 DG A 5 ? DG A 5 . ? 1_555 ? 10 AC2 8 DG A 6 ? DG A 6 . ? 1_555 ? 11 AC2 8 DG A 10 ? DG A 10 . ? 1_555 ? 12 AC2 8 DG A 11 ? DG A 11 . ? 1_555 ? 13 AC2 8 DG A 17 ? DG A 17 . ? 1_555 ? 14 AC2 8 DG A 18 ? DG A 18 . ? 1_555 ? 15 AC2 8 DG A 23 ? DG A 23 . ? 1_555 ? 16 AC2 8 DG A 24 ? DG A 24 . ? 1_555 ? 17 AC3 6 DA A 3 ? DA A 3 . ? 1_555 ? 18 AC3 6 DG A 4 ? DG A 4 . ? 1_555 ? 19 AC3 6 DG A 12 ? DG A 12 . ? 1_555 ? 20 AC3 6 DT A 14 ? DT A 14 . ? 1_555 ? 21 AC3 6 DA A 15 ? DA A 15 . ? 1_555 ? 22 AC3 6 DG A 16 ? DG A 16 . ? 1_555 ? # _atom_sites.entry_id 5MVB _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol AU C H K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DA 9 9 9 DA DA A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DG 12 12 12 DG DG A . n A 1 13 DT 13 13 13 DT DT A . n A 1 14 DT 14 14 14 DT DT A . n A 1 15 DA 15 15 15 DA DA A . n A 1 16 DG 16 16 16 DG DG A . n A 1 17 DG 17 17 17 DG DG A . n A 1 18 DG 18 18 18 DG DG A . n A 1 19 DT 19 19 19 DT DT A . n A 1 20 DT 20 20 20 DT DT A . n A 1 21 DA 21 21 21 DA DA A . n A 1 22 DG 22 22 22 DG DG A . n A 1 23 DG 23 23 23 DG DG A . n A 1 24 DG 24 24 24 DG DG A . n A 1 25 DT 25 25 25 DT DT A . n A 1 26 DT 26 26 26 DT DT A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 101 27 K K A . C 2 K 1 102 28 K K A . D 3 AUZ 1 103 100 AUZ AOX A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 270 ? 1 MORE -0 ? 1 'SSA (A^2)' 4990 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 57.7 ? 2 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 98.6 ? 3 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 68.3 ? 4 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 81.8 ? 5 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 114.9 ? 6 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 70.9 ? 7 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 134.0 ? 8 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 167.4 ? 9 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 109.8 ? 10 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 74.8 ? 11 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 155.5 ? 12 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 98.7 ? 13 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 63.5 ? 14 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 105.6 ? 15 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 70.1 ? 16 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 84.2 ? 17 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 97.3 ? 18 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 159.8 ? 19 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 129.2 ? 20 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 81.1 ? 21 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 107.0 ? 22 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 102.6 ? 23 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 61.6 ? 24 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 99.3 ? 25 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 169.8 ? 26 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 107.3 ? 27 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 66.7 ? 28 O6 ? A DG 22 ? A DG 22 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 60.8 ? 29 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 77.4 ? 30 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 123.7 ? 31 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 73.3 ? 32 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 63.2 ? 33 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 97.0 ? 34 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 73.9 ? 35 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 83.5 ? 36 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 145.6 ? 37 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 94.7 ? 38 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 48.7 ? 39 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 150.9 ? 40 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 127.1 ? 41 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 82.4 ? 42 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 120.5 ? 43 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 81.2 ? 44 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 62.7 ? 45 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 131.1 ? 46 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 152.9 ? 47 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 89.5 ? 48 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 58.6 ? 49 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 88.2 ? 50 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 87.0 ? 51 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 80.2 ? 52 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 132.0 ? 53 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 149.8 ? 54 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 127.4 ? 55 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 82.9 ? 56 O6 ? A DG 23 ? A DG 23 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 71.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-05-31 2 'Structure model' 1 1 2017-06-14 3 'Structure model' 1 2 2018-01-17 4 'Structure model' 1 3 2019-05-08 5 'Structure model' 1 4 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' struct 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_seq_map_depositor_info 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_database_status 7 5 'Structure model' pdbx_nmr_spectrometer 8 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_id_ASTM' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_volume' 5 2 'Structure model' '_citation.page_first' 6 2 'Structure model' '_citation.page_last' 7 3 'Structure model' '_struct.title' 8 4 'Structure model' '_pdbx_nmr_software.name' 9 4 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 10 5 'Structure model' '_database_2.pdbx_DOI' 11 5 'Structure model' '_database_2.pdbx_database_accession' 12 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' 13 5 'Structure model' '_pdbx_nmr_spectrometer.model' 14 5 'Structure model' '_struct_conn.pdbx_dist_value' 15 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 16 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'DNA 26mer' 1 ? mM 'natural abundance' 1 'potassium chloride' 70 ? mM 'natural abundance' 1 KPi 25 ? mM 'natural abundance' 1 DSS 0.3 ? mM 'natural abundance' 1 Auoxo6 1.3 ? mM 'natural abundance' 2 'DNA 26mer' 1 ? mM 'natural abundance' 2 'potassium chloride' 70 ? mM 'natural abundance' 2 KPi 25 ? mM 'natural abundance' 2 DSS 0.3 ? mM 'natural abundance' 2 Auoxo6 1.3 ? mM 'natural abundance' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.64 108.30 2.34 0.30 N 2 1 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 110.35 108.30 2.05 0.30 N 3 2 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.60 108.30 3.30 0.30 N 4 2 "O4'" A DG 17 ? ? "C1'" A DG 17 ? ? N9 A DG 17 ? ? 110.56 108.30 2.26 0.30 N 5 3 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.71 108.30 3.41 0.30 N 6 3 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 110.48 108.30 2.18 0.30 N 7 4 "O4'" A DG 5 ? ? "C4'" A DG 5 ? ? "C3'" A DG 5 ? ? 101.90 104.50 -2.60 0.40 N 8 4 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.47 108.30 2.17 0.30 N 9 4 "O4'" A DG 17 ? ? "C1'" A DG 17 ? ? N9 A DG 17 ? ? 110.15 108.30 1.85 0.30 N 10 5 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.32 108.30 2.02 0.30 N 11 6 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.29 108.30 1.99 0.30 N 12 6 "O4'" A DT 19 ? ? "C1'" A DT 19 ? ? N1 A DT 19 ? ? 110.31 108.30 2.01 0.30 N 13 6 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.59 108.30 2.29 0.30 N 14 7 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.40 108.30 2.10 0.30 N 15 7 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.32 108.30 2.02 0.30 N 16 8 "C1'" A DA 3 ? ? "O4'" A DA 3 ? ? "C4'" A DA 3 ? ? 102.71 110.10 -7.39 1.00 N 17 8 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 113.72 108.30 5.42 0.30 N 18 9 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.44 108.30 2.14 0.30 N 19 10 "O4'" A DG 5 ? ? "C4'" A DG 5 ? ? "C3'" A DG 5 ? ? 101.17 104.50 -3.33 0.40 N 20 10 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.84 108.30 2.54 0.30 N 21 10 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.65 108.30 2.35 0.30 N 22 10 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 110.47 108.30 2.17 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 5 DG A 6 ? ? 0.062 'SIDE CHAIN' 2 5 DT A 7 ? ? 0.072 'SIDE CHAIN' 3 9 DG A 6 ? ? 0.065 'SIDE CHAIN' 4 10 DG A 6 ? ? 0.076 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5MVB 'double helix' 5MVB 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 10 1_555 A DG 18 1_555 1.610 3.572 0.041 10.717 -8.294 -92.994 1 A_DG10:DG18_A A 10 ? A 18 ? 6 3 1 A DG 12 1_555 A DG 16 1_555 -1.153 -3.928 -0.170 -7.588 9.870 91.024 2 A_DG12:DG16_A A 12 ? A 16 ? 6 3 1 A DG 23 1_555 A DG 17 1_555 -1.783 -3.385 -0.083 -5.642 0.724 95.719 3 A_DG23:DG17_A A 23 ? A 17 ? 6 3 1 A DG 4 1_555 A DG 22 1_555 1.358 3.953 -0.349 9.201 -5.581 -86.192 4 A_DG4:DG22_A A 4 ? A 22 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 12 1_555 A DG 16 1_555 A DG 12 1_555 A DG 16 1_555 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -25.285 -23.522 0.000 1 AA_DG12DG12:DG16DG16_AA A 12 ? A 16 ? A 12 ? A 16 ? 1 A DG 12 1_555 A DG 16 1_555 A DG 23 1_555 A DG 17 1_555 2.727 1.171 4.680 37.437 169.647 -45.116 -2.177 1.716 0.200 -86.710 19.135 -174.209 2 AA_DG12DG23:DG17DG16_AA A 12 ? A 16 ? A 23 ? A 17 ? 1 A DG 23 1_555 A DG 17 1_555 A DG 4 1_555 A DG 22 1_555 1.049 2.889 0.265 -162.056 36.757 -157.677 -1.451 0.496 0.334 -18.407 -81.154 -177.330 3 AA_DG23DG4:DG22DG17_AA A 23 ? A 17 ? A 4 ? A 22 ? # _pdbx_audit_support.funding_organization 'Land Hessen' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number 'LOEWE SynChemBio' _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 "bis(m2-Oxo)-bis(2-methyl-2,2'-bipyridine)-di-gold(iii)" AUZ #