HEADER TRANSFERASE 17-JAN-17 5MVS TITLE CRYSTAL STRUCTURE OF DOT1L IN COMPLEX WITH ADENOSINE AND INHIBITOR TITLE 2 CPD1 [N6-(2,6-DICHLOROPHENYL)-N6-(PENT-2-YN-1-YL)QUINOLINE-4,6- TITLE 3 DIAMINE] COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DOT1-LIKE PROTEIN,HISTONE H3-K79 METHYLTRANSFERASE,H3-K79- COMPND 5 HMTASE,LYSINE N-METHYLTRANSFERASE 4; COMPND 6 EC: 2.1.1.43; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DOT1L, KIAA1814, KMT4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, COMPLEX, METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.BE,E.KOCH,C.GAUL,F.STAUFFER,H.MOEBITZ,C.SCHEUFLER REVDAT 3 17-JAN-24 5MVS 1 REMARK REVDAT 2 05-APR-17 5MVS 1 JRNL REVDAT 1 22-MAR-17 5MVS 0 JRNL AUTH H.MOBITZ,R.MACHAUER,P.HOLZER,A.VAUPEL,F.STAUFFER,C.RAGOT, JRNL AUTH 2 G.CARAVATTI,C.SCHEUFLER,C.FERNANDEZ,U.HOMMEL,R.TIEDT, JRNL AUTH 3 K.S.BEYER,C.CHEN,H.ZHU,C.GAUL JRNL TITL DISCOVERY OF POTENT, SELECTIVE, AND STRUCTURALLY NOVEL DOT1L JRNL TITL 2 INHIBITORS BY A FRAGMENT LINKING APPROACH. JRNL REF ACS MED CHEM LETT V. 8 338 2017 JRNL REFN ISSN 1948-5875 JRNL PMID 28337327 JRNL DOI 10.1021/ACSMEDCHEMLETT.6B00519 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 54952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2748 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.24 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3958 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2093 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3760 REMARK 3 BIN R VALUE (WORKING SET) : 0.2069 REMARK 3 BIN FREE R VALUE : 0.2535 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 198 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5140 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 439 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.86610 REMARK 3 B22 (A**2) : 5.86610 REMARK 3 B33 (A**2) : -11.73220 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.268 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.156 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.131 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.154 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.131 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5379 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7317 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1803 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 133 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 769 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5379 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 688 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6315 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.03 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.87 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* L|* } REMARK 3 ORIGIN FOR THE GROUP (A): 43.9622 -8.1068 8.6723 REMARK 3 T TENSOR REMARK 3 T11: -0.1485 T22: -0.1006 REMARK 3 T33: -0.0679 T12: -0.0143 REMARK 3 T13: -0.0355 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 2.1219 L22: 2.0418 REMARK 3 L33: 0.7347 L12: -0.9621 REMARK 3 L13: 0.3866 L23: -0.2082 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: -0.1771 S13: -0.0459 REMARK 3 S21: 0.1902 S22: 0.0278 S23: -0.4440 REMARK 3 S31: -0.0811 S32: 0.1178 S33: -0.0331 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* M|* } REMARK 3 ORIGIN FOR THE GROUP (A): 35.7862 -37.2669 8.5173 REMARK 3 T TENSOR REMARK 3 T11: -0.1134 T22: -0.1381 REMARK 3 T33: -0.0214 T12: 0.0354 REMARK 3 T13: -0.0288 T23: 0.0435 REMARK 3 L TENSOR REMARK 3 L11: 2.2005 L22: 1.5670 REMARK 3 L33: 0.4945 L12: -0.5673 REMARK 3 L13: -0.4893 L23: 0.1023 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: -0.0972 S13: -0.3700 REMARK 3 S21: 0.0478 S22: -0.0841 S23: -0.2591 REMARK 3 S31: 0.1702 S32: 0.0299 S33: 0.0585 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MVS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003089. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55009 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10400 REMARK 200 FOR THE DATA SET : 18.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1NW3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M K/NA TARTRATE, 0.1M HEPES PH6.8, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.91300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.91300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.91300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 PRO A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 THR A 93 REMARK 465 GLN A 94 REMARK 465 PRO A 95 REMARK 465 MET A 96 REMARK 465 LYS A 97 REMARK 465 LEU A 98 REMARK 465 SER A 302 REMARK 465 VAL A 303 REMARK 465 GLY A 333 REMARK 465 GLY B 0 REMARK 465 PRO B 1 REMARK 465 GLY B 2 REMARK 465 GLU B 3 REMARK 465 THR B 93 REMARK 465 GLN B 94 REMARK 465 PRO B 95 REMARK 465 MET B 96 REMARK 465 LYS B 97 REMARK 465 LEU B 98 REMARK 465 PRO B 332 REMARK 465 GLY B 333 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 ARG A 73 NE CZ NH1 NH2 REMARK 470 LYS A 77 CD CE NZ REMARK 470 THR A 92 OG1 CG2 REMARK 470 ASN A 99 CG OD1 ND2 REMARK 470 LYS A 124 CD CE NZ REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 ILE A 190 CD1 REMARK 470 LYS A 193 CD CE NZ REMARK 470 LYS A 212 CD CE NZ REMARK 470 ARG A 278 CD NE CZ NH1 NH2 REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 SER A 304 OG REMARK 470 LYS B 4 CD CE NZ REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 LYS B 66 CE NZ REMARK 470 ASN B 99 CG OD1 ND2 REMARK 470 LYS B 124 CE NZ REMARK 470 ASN B 126 CG OD1 ND2 REMARK 470 GLU B 129 CG CD OE1 OE2 REMARK 470 LYS B 180 CD CE NZ REMARK 470 LYS B 207 CE NZ REMARK 470 LYS B 261 CE NZ REMARK 470 ARG B 278 CG CD NE CZ NH1 NH2 REMARK 470 SER B 281 OG REMARK 470 ARG B 282 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 300 CG CD CE NZ REMARK 470 SER B 302 OG REMARK 470 SER B 304 OG REMARK 470 SER B 328 OG REMARK 470 LYS B 330 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 139 -38.00 -134.85 REMARK 500 THR B 139 -40.41 -135.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 720 DISTANCE = 6.10 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5JJ A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5JJ B 402 DBREF 5MVS A 2 332 UNP Q8TEK3 DOT1L_HUMAN 2 332 DBREF 5MVS B 2 332 UNP Q8TEK3 DOT1L_HUMAN 2 332 SEQADV 5MVS GLY A 0 UNP Q8TEK3 EXPRESSION TAG SEQADV 5MVS PRO A 1 UNP Q8TEK3 EXPRESSION TAG SEQADV 5MVS GLY A 333 UNP Q8TEK3 EXPRESSION TAG SEQADV 5MVS GLY B 0 UNP Q8TEK3 EXPRESSION TAG SEQADV 5MVS PRO B 1 UNP Q8TEK3 EXPRESSION TAG SEQADV 5MVS GLY B 333 UNP Q8TEK3 EXPRESSION TAG SEQRES 1 A 334 GLY PRO GLY GLU LYS LEU GLU LEU ARG LEU LYS SER PRO SEQRES 2 A 334 VAL GLY ALA GLU PRO ALA VAL TYR PRO TRP PRO LEU PRO SEQRES 3 A 334 VAL TYR ASP LYS HIS HIS ASP ALA ALA HIS GLU ILE ILE SEQRES 4 A 334 GLU THR ILE ARG TRP VAL CYS GLU GLU ILE PRO ASP LEU SEQRES 5 A 334 LYS LEU ALA MET GLU ASN TYR VAL LEU ILE ASP TYR ASP SEQRES 6 A 334 THR LYS SER PHE GLU SER MET GLN ARG LEU CYS ASP LYS SEQRES 7 A 334 TYR ASN ARG ALA ILE ASP SER ILE HIS GLN LEU TRP LYS SEQRES 8 A 334 GLY THR THR GLN PRO MET LYS LEU ASN THR ARG PRO SER SEQRES 9 A 334 THR GLY LEU LEU ARG HIS ILE LEU GLN GLN VAL TYR ASN SEQRES 10 A 334 HIS SER VAL THR ASP PRO GLU LYS LEU ASN ASN TYR GLU SEQRES 11 A 334 PRO PHE SER PRO GLU VAL TYR GLY GLU THR SER PHE ASP SEQRES 12 A 334 LEU VAL ALA GLN MET ILE ASP GLU ILE LYS MET THR ASP SEQRES 13 A 334 ASP ASP LEU PHE VAL ASP LEU GLY SER GLY VAL GLY GLN SEQRES 14 A 334 VAL VAL LEU GLN VAL ALA ALA ALA THR ASN CYS LYS HIS SEQRES 15 A 334 HIS TYR GLY VAL GLU LYS ALA ASP ILE PRO ALA LYS TYR SEQRES 16 A 334 ALA GLU THR MET ASP ARG GLU PHE ARG LYS TRP MET LYS SEQRES 17 A 334 TRP TYR GLY LYS LYS HIS ALA GLU TYR THR LEU GLU ARG SEQRES 18 A 334 GLY ASP PHE LEU SER GLU GLU TRP ARG GLU ARG ILE ALA SEQRES 19 A 334 ASN THR SER VAL ILE PHE VAL ASN ASN PHE ALA PHE GLY SEQRES 20 A 334 PRO GLU VAL ASP HIS GLN LEU LYS GLU ARG PHE ALA ASN SEQRES 21 A 334 MET LYS GLU GLY GLY ARG ILE VAL SER SER LYS PRO PHE SEQRES 22 A 334 ALA PRO LEU ASN PHE ARG ILE ASN SER ARG ASN LEU SER SEQRES 23 A 334 ASP ILE GLY THR ILE MET ARG VAL VAL GLU LEU SER PRO SEQRES 24 A 334 LEU LYS GLY SER VAL SER TRP THR GLY LYS PRO VAL SER SEQRES 25 A 334 TYR TYR LEU HIS THR ILE ASP ARG THR ILE LEU GLU ASN SEQRES 26 A 334 TYR PHE SER SER LEU LYS ASN PRO GLY SEQRES 1 B 334 GLY PRO GLY GLU LYS LEU GLU LEU ARG LEU LYS SER PRO SEQRES 2 B 334 VAL GLY ALA GLU PRO ALA VAL TYR PRO TRP PRO LEU PRO SEQRES 3 B 334 VAL TYR ASP LYS HIS HIS ASP ALA ALA HIS GLU ILE ILE SEQRES 4 B 334 GLU THR ILE ARG TRP VAL CYS GLU GLU ILE PRO ASP LEU SEQRES 5 B 334 LYS LEU ALA MET GLU ASN TYR VAL LEU ILE ASP TYR ASP SEQRES 6 B 334 THR LYS SER PHE GLU SER MET GLN ARG LEU CYS ASP LYS SEQRES 7 B 334 TYR ASN ARG ALA ILE ASP SER ILE HIS GLN LEU TRP LYS SEQRES 8 B 334 GLY THR THR GLN PRO MET LYS LEU ASN THR ARG PRO SER SEQRES 9 B 334 THR GLY LEU LEU ARG HIS ILE LEU GLN GLN VAL TYR ASN SEQRES 10 B 334 HIS SER VAL THR ASP PRO GLU LYS LEU ASN ASN TYR GLU SEQRES 11 B 334 PRO PHE SER PRO GLU VAL TYR GLY GLU THR SER PHE ASP SEQRES 12 B 334 LEU VAL ALA GLN MET ILE ASP GLU ILE LYS MET THR ASP SEQRES 13 B 334 ASP ASP LEU PHE VAL ASP LEU GLY SER GLY VAL GLY GLN SEQRES 14 B 334 VAL VAL LEU GLN VAL ALA ALA ALA THR ASN CYS LYS HIS SEQRES 15 B 334 HIS TYR GLY VAL GLU LYS ALA ASP ILE PRO ALA LYS TYR SEQRES 16 B 334 ALA GLU THR MET ASP ARG GLU PHE ARG LYS TRP MET LYS SEQRES 17 B 334 TRP TYR GLY LYS LYS HIS ALA GLU TYR THR LEU GLU ARG SEQRES 18 B 334 GLY ASP PHE LEU SER GLU GLU TRP ARG GLU ARG ILE ALA SEQRES 19 B 334 ASN THR SER VAL ILE PHE VAL ASN ASN PHE ALA PHE GLY SEQRES 20 B 334 PRO GLU VAL ASP HIS GLN LEU LYS GLU ARG PHE ALA ASN SEQRES 21 B 334 MET LYS GLU GLY GLY ARG ILE VAL SER SER LYS PRO PHE SEQRES 22 B 334 ALA PRO LEU ASN PHE ARG ILE ASN SER ARG ASN LEU SER SEQRES 23 B 334 ASP ILE GLY THR ILE MET ARG VAL VAL GLU LEU SER PRO SEQRES 24 B 334 LEU LYS GLY SER VAL SER TRP THR GLY LYS PRO VAL SER SEQRES 25 B 334 TYR TYR LEU HIS THR ILE ASP ARG THR ILE LEU GLU ASN SEQRES 26 B 334 TYR PHE SER SER LEU LYS ASN PRO GLY HET ADN A 401 19 HET 5JJ A 402 25 HET TLA A 403 10 HET ADN B 401 19 HET 5JJ B 402 25 HETNAM ADN ADENOSINE HETNAM 5JJ N~6~-(2,6-DICHLOROPHENYL)-N~6~-(PENT-2-YN-1-YL) HETNAM 2 5JJ QUINOLINE-4,6-DIAMINE HETNAM TLA L(+)-TARTARIC ACID FORMUL 3 ADN 2(C10 H13 N5 O4) FORMUL 4 5JJ 2(C20 H17 CL2 N3) FORMUL 5 TLA C4 H6 O6 FORMUL 8 HOH *439(H2 O) HELIX 1 AA1 ASP A 32 ILE A 48 1 17 HELIX 2 AA2 ILE A 48 MET A 55 1 8 HELIX 3 AA3 GLU A 56 ILE A 61 5 6 HELIX 4 AA4 SER A 67 GLY A 91 1 25 HELIX 5 AA5 SER A 103 VAL A 119 1 17 HELIX 6 AA6 ASP A 121 ASN A 126 5 6 HELIX 7 AA7 SER A 132 TYR A 136 5 5 HELIX 8 AA8 THR A 139 LYS A 152 1 14 HELIX 9 AA9 GLY A 167 THR A 177 1 11 HELIX 10 AB1 ALA A 188 GLY A 210 1 23 HELIX 11 AB2 SER A 225 ASN A 234 1 10 HELIX 12 AB3 GLY A 246 ALA A 258 1 13 HELIX 13 AB4 ASP A 286 THR A 289 5 4 HELIX 14 AB5 ARG A 319 ASN A 331 1 13 HELIX 15 AB6 ALA B 33 ILE B 48 1 16 HELIX 16 AB7 ILE B 48 MET B 55 1 8 HELIX 17 AB8 GLU B 56 ILE B 61 5 6 HELIX 18 AB9 SER B 67 THR B 92 1 26 HELIX 19 AC1 SER B 103 VAL B 119 1 17 HELIX 20 AC2 ASP B 121 ASN B 126 5 6 HELIX 21 AC3 SER B 132 TYR B 136 5 5 HELIX 22 AC4 THR B 139 ILE B 151 1 13 HELIX 23 AC5 GLY B 167 THR B 177 1 11 HELIX 24 AC6 ALA B 188 GLY B 210 1 23 HELIX 25 AC7 SER B 225 ASN B 234 1 10 HELIX 26 AC8 GLY B 246 ALA B 258 1 13 HELIX 27 AC9 ASP B 286 THR B 289 5 4 HELIX 28 AD1 ARG B 319 ASN B 331 1 13 SHEET 1 AA1 2 GLU A 6 LEU A 9 0 SHEET 2 AA1 2 ALA A 18 PRO A 21 -1 O TYR A 20 N LEU A 7 SHEET 1 AA2 7 TYR A 216 ARG A 220 0 SHEET 2 AA2 7 HIS A 181 GLU A 186 1 N GLY A 184 O GLU A 219 SHEET 3 AA2 7 LEU A 158 LEU A 162 1 N ASP A 161 O TYR A 183 SHEET 4 AA2 7 VAL A 237 VAL A 240 1 O PHE A 239 N VAL A 160 SHEET 5 AA2 7 ARG A 265 SER A 268 1 O VAL A 267 N ILE A 238 SHEET 6 AA2 7 TYR A 312 ILE A 317 -1 O HIS A 315 N ILE A 266 SHEET 7 AA2 7 MET A 291 LEU A 296 -1 N LEU A 296 O TYR A 312 SHEET 1 AA3 2 GLU B 6 LEU B 9 0 SHEET 2 AA3 2 ALA B 18 PRO B 21 -1 O TYR B 20 N LEU B 7 SHEET 1 AA4 2 VAL B 26 ASP B 28 0 SHEET 2 AA4 2 HIS B 31 ASP B 32 -1 O HIS B 31 N ASP B 28 SHEET 1 AA5 7 TYR B 216 ARG B 220 0 SHEET 2 AA5 7 HIS B 181 GLU B 186 1 N GLY B 184 O GLU B 219 SHEET 3 AA5 7 LEU B 158 LEU B 162 1 N ASP B 161 O TYR B 183 SHEET 4 AA5 7 VAL B 237 VAL B 240 1 O PHE B 239 N VAL B 160 SHEET 5 AA5 7 ARG B 265 SER B 268 1 O VAL B 267 N ILE B 238 SHEET 6 AA5 7 TYR B 312 ILE B 317 -1 O HIS B 315 N ILE B 266 SHEET 7 AA5 7 MET B 291 LEU B 296 -1 N LEU B 296 O TYR B 312 CISPEP 1 TRP A 22 PRO A 23 0 -0.45 CISPEP 2 TRP B 22 PRO B 23 0 -1.14 SITE 1 AC1 10 GLY A 163 GLU A 186 LYS A 187 ALA A 188 SITE 2 AC1 10 GLY A 221 ASP A 222 PHE A 223 ASN A 241 SITE 3 AC1 10 HOH A 553 HOH A 619 SITE 1 AC2 14 PHE A 131 SER A 140 LEU A 143 VAL A 144 SITE 2 AC2 14 PHE A 239 VAL A 240 ASN A 241 VAL A 267 SITE 3 AC2 14 SER A 268 SER A 269 VAL A 310 SER A 311 SITE 4 AC2 14 HOH A 510 HOH A 618 SITE 1 AC3 6 GLY A 246 PRO A 247 GLU A 248 VAL A 249 SITE 2 AC3 6 LYS A 330 HOH A 570 SITE 1 AC4 9 GLY B 163 GLU B 186 LYS B 187 GLY B 221 SITE 2 AC4 9 ASP B 222 PHE B 223 ASN B 241 PHE B 245 SITE 3 AC4 9 HOH B 593 SITE 1 AC5 13 PHE B 131 SER B 140 LEU B 143 VAL B 144 SITE 2 AC5 13 PHE B 239 VAL B 240 ASN B 241 VAL B 267 SITE 3 AC5 13 SER B 268 SER B 269 VAL B 310 SER B 311 SITE 4 AC5 13 HOH B 575 CRYST1 158.211 158.211 73.826 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006321 0.003649 0.000000 0.00000 SCALE2 0.000000 0.007298 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013545 0.00000