HEADER TRANSFERASE 18-JAN-17 5MW8 TITLE INOSITOL 1,3,4,5,6-PENTAKISPHOSPHATE 2-KINASE FROM M. MUSCULUS IN TITLE 2 COMPLEX WITH ATP AND IP5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL-PENTAKISPHOSPHATE 2-KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: INOSITOL-1,3,4,5,6-PENTAKISPHOSPHATE 2-KINASE,INS(1,6)P5 2- COMPND 5 KINASE,INSP5 2-KINASE; COMPND 6 EC: 2.7.1.158; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: IPPK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: STAR KEYWDS PROTEIN STRUCTURE, MAMMAL IPK, INOSITOL KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.FRANCO-ECHEVARRIA,J.SANZ-APARICIO,B.GONZALEZ REVDAT 3 08-MAY-24 5MW8 1 LINK REVDAT 2 05-JUL-17 5MW8 1 JRNL REVDAT 1 10-MAY-17 5MW8 0 JRNL AUTH E.FRANCO-ECHEVARRIA,J.SANZ-APARICIO,C.A.BREARLEY, JRNL AUTH 2 J.M.GONZALEZ-RUBIO,B.GONZALEZ JRNL TITL THE CRYSTAL STRUCTURE OF MAMMALIAN INOSITOL JRNL TITL 2 1,3,4,5,6-PENTAKISPHOSPHATE 2-KINASE REVEALS A NEW JRNL TITL 3 ZINC-BINDING SITE AND KEY FEATURES FOR PROTEIN FUNCTION. JRNL REF J. BIOL. CHEM. V. 292 10534 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28450399 JRNL DOI 10.1074/JBC.M117.780395 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 17573 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 938 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1319 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.4050 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.4060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3334 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.67000 REMARK 3 B22 (A**2) : -1.88000 REMARK 3 B33 (A**2) : 2.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -9.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.568 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.296 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.396 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.936 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3481 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3351 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4706 ; 1.220 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7746 ; 0.869 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 409 ; 5.544 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;34.828 ;23.947 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 637 ;16.035 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;10.276 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 520 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3815 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 767 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1655 ; 1.456 ; 5.220 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1653 ; 1.457 ; 5.219 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2057 ; 2.632 ; 7.806 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2058 ; 2.632 ; 7.807 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1826 ; 1.167 ; 5.349 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1827 ; 1.167 ; 5.349 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2650 ; 2.143 ; 7.962 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3700 ; 4.549 ;39.343 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3688 ; 4.516 ;39.365 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MW8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200002823. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : KB FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18528 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 71.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.52800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM CHLORIDE, SODIUM ACETATE, REMARK 280 PEG 6000, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.74750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 GLU A -1 REMARK 465 PHE A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 GLY A 4 REMARK 465 LYS A 41 REMARK 465 LYS A 42 REMARK 465 GLN A 122 REMARK 465 THR A 123 REMARK 465 PHE A 124 REMARK 465 HIS A 125 REMARK 465 PHE A 126 REMARK 465 ALA A 127 REMARK 465 GLU A 128 REMARK 465 GLY A 221 REMARK 465 ASP A 222 REMARK 465 ALA A 223 REMARK 465 ARG A 224 REMARK 465 SER A 225 REMARK 465 PRO A 226 REMARK 465 VAL A 227 REMARK 465 ALA A 228 REMARK 465 SER A 244 REMARK 465 ASN A 245 REMARK 465 GLY A 246 REMARK 465 LEU A 247 REMARK 465 ALA A 248 REMARK 465 PHE A 296 REMARK 465 SER A 297 REMARK 465 ARG A 298 REMARK 465 SER A 299 REMARK 465 LEU A 300 REMARK 465 HIS A 301 REMARK 465 ASN A 302 REMARK 465 GLN A 303 REMARK 465 GLY A 304 REMARK 465 LYS A 305 REMARK 465 ASN A 306 REMARK 465 THR A 307 REMARK 465 SER A 308 REMARK 465 GLU A 309 REMARK 465 HIS A 310 REMARK 465 LEU A 411 REMARK 465 GLN A 412 REMARK 465 GLY A 413 REMARK 465 THR A 414 REMARK 465 SER A 415 REMARK 465 SER A 416 REMARK 465 ASP A 417 REMARK 465 GLN A 418 REMARK 465 ARG A 419 REMARK 465 HIS A 465 REMARK 465 ALA A 466 REMARK 465 LYS A 467 REMARK 465 ASP A 468 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 27 -85.34 -86.78 REMARK 500 VAL A 62 -53.31 -124.81 REMARK 500 ASP A 106 92.64 -67.98 REMARK 500 LYS A 140 -173.27 65.24 REMARK 500 GLN A 205 -124.82 55.09 REMARK 500 TYR A 218 -80.18 -148.06 REMARK 500 ARG A 282 56.85 -112.48 REMARK 500 ASP A 332 160.76 67.12 REMARK 500 ASP A 364 -162.42 -114.14 REMARK 500 SER A 427 -163.06 -110.63 REMARK 500 ASP A 437 60.10 65.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 159 SG REMARK 620 2 CYS A 162 SG 92.1 REMARK 620 3 CYS A 181 SG 107.2 109.9 REMARK 620 4 CYS A 291 SG 101.7 129.3 111.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 437 OD1 REMARK 620 2 ATP A 501 O1G 87.4 REMARK 620 3 ATP A 501 O1B 76.5 69.9 REMARK 620 4 5MY A 502 O43 154.3 80.8 119.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 505 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 437 OD2 REMARK 620 2 ATP A 501 O3G 78.1 REMARK 620 3 ATP A 501 O3B 66.8 55.3 REMARK 620 4 ATP A 501 O2A 77.7 121.9 66.6 REMARK 620 5 HOH A 606 O 72.3 86.9 128.3 132.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5MY A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 506 DBREF 5MW8 A 1 468 UNP Q6P1C1 IPPK_MOUSE 1 468 SEQADV 5MW8 GLY A -2 UNP Q6P1C1 EXPRESSION TAG SEQADV 5MW8 GLU A -1 UNP Q6P1C1 EXPRESSION TAG SEQADV 5MW8 PHE A 0 UNP Q6P1C1 EXPRESSION TAG SEQRES 1 A 471 GLY GLU PHE MET GLU GLU GLY LYS MET ASP GLU ASN GLU SEQRES 2 A 471 TRP SER TYR HIS GLY GLU GLY ASN LYS SER LEU VAL VAL SEQRES 3 A 471 ALA HIS ALA GLN ARG CYS VAL VAL LEU ARG PHE LEU LYS SEQRES 4 A 471 PHE PRO PRO ASN LYS LYS LYS THR SER GLU GLU ILE LEU SEQRES 5 A 471 GLN HIS LEU GLN ASN ILE VAL ASP PHE GLY LYS ASN VAL SEQRES 6 A 471 MET LYS ASP PHE LEU GLY GLU ASN TYR VAL HIS CYS GLY SEQRES 7 A 471 GLU VAL VAL GLN LEU PRO LEU GLU PHE VAL LYS GLN LEU SEQRES 8 A 471 CYS LEU LYS ILE GLN CYS GLU ARG PRO GLU SER ARG CYS SEQRES 9 A 471 ASP LYS ASP LEU ASP THR PHE SER GLY TYR ALA MET CYS SEQRES 10 A 471 LEU PRO ASN LEU THR ARG LEU GLN THR PHE HIS PHE ALA SEQRES 11 A 471 GLU HIS ARG PRO ILE LEU CYS VAL GLU ILE LYS PRO LYS SEQRES 12 A 471 CYS GLY PHE ILE PRO PHE SER ASN ASP VAL THR HIS GLU SEQRES 13 A 471 MET LYS HIS LYS VAL CYS ARG TYR CYS MET HIS GLN HIS SEQRES 14 A 471 LEU LYS VAL ALA THR GLY LYS TRP LYS LYS ILE SER LYS SEQRES 15 A 471 TYR CYS PRO LEU ASP LEU TYR SER GLY ASN LYS GLN ARG SEQRES 16 A 471 MET HIS PHE ALA LEU ARG SER LEU LEU GLN GLU THR GLN SEQRES 17 A 471 ASN ASN LEU ARG ILE PHE LYS ASN GLY GLU LEU ILE TYR SEQRES 18 A 471 GLY CYS GLY ASP ALA ARG SER PRO VAL ALA ASP LEU LYS SEQRES 19 A 471 GLU LEU ALA HIS HIS LEU LYS PRO PHE PHE PHE PRO SER SEQRES 20 A 471 ASN GLY LEU ALA SER GLY PRO HIS CYS THR LYS ALA VAL SEQRES 21 A 471 ILE ARG GLU LEU VAL HIS VAL ILE THR ARG VAL LEU LEU SEQRES 22 A 471 SER SER SER GLU LYS ALA ARG ALA GLY ALA LEU ARG LEU SEQRES 23 A 471 GLY LEU GLN GLY PRO ARG VAL CYS GLU ALA SER PRO PHE SEQRES 24 A 471 SER ARG SER LEU HIS ASN GLN GLY LYS ASN THR SER GLU SEQRES 25 A 471 HIS SER GLY LEU PRO LYS GLY CYS LEU LEU TYR LYS THR SEQRES 26 A 471 LEU GLN VAL GLN MET LEU ASP GLN LEU ASP ILE GLU GLY SEQRES 27 A 471 LEU TYR PRO LEU TYR LYS ARG VAL GLU GLN TYR LEU GLU SEQRES 28 A 471 GLU PHE PRO GLU GLU ARG LYS THR LEU GLN ILE ASP GLY SEQRES 29 A 471 PRO TYR ASP GLU VAL PHE TYR GLN LYS LEU LEU ASP LEU SEQRES 30 A 471 SER THR GLU ASP ASP GLY THR VAL ALA PHE ALA LEU THR SEQRES 31 A 471 LYS VAL GLN GLN TYR ARG VAL ALA MET THR ALA LYS ASP SEQRES 32 A 471 CYS SER ILE MET ILE ALA LEU SER PRO CYS LEU GLN GLY SEQRES 33 A 471 THR SER SER ASP GLN ARG PRO VAL ILE PRO SER SER ARG SEQRES 34 A 471 SER ARG LEU ALA PHE SER VAL SER VAL LEU ASP LEU ASP SEQRES 35 A 471 LEU LYS PRO TYR GLU SER ILE PRO HIS GLN TYR LYS LEU SEQRES 36 A 471 ASP SER LYS ILE VAL ASN TYR TYR SER LYS THR VAL HIS SEQRES 37 A 471 ALA LYS ASP HET ATP A 501 31 HET 5MY A 502 32 HET ZN A 503 1 HET MG A 504 1 HET MG A 505 1 HET ACT A 506 4 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM 5MY MYO-INOSITOL-(1,3,4,5,6)-PENTAKISPHOSPHATE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 5MY C6 H17 O21 P5 FORMUL 4 ZN ZN 2+ FORMUL 5 MG 2(MG 2+) FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 HOH *39(H2 O) HELIX 1 AA1 ASP A 7 ASN A 9 5 3 HELIX 2 AA2 THR A 44 VAL A 62 1 19 HELIX 3 AA3 VAL A 62 GLY A 68 1 7 HELIX 4 AA4 PRO A 81 GLN A 93 1 13 HELIX 5 AA5 PRO A 97 LYS A 103 5 7 HELIX 6 AA6 HIS A 152 LYS A 157 5 6 HELIX 7 AA7 CYS A 159 THR A 171 1 13 HELIX 8 AA8 CYS A 181 TYR A 186 1 6 HELIX 9 AA9 ASN A 189 GLU A 203 1 15 HELIX 10 AB1 LEU A 230 PHE A 242 1 13 HELIX 11 AB2 CYS A 253 LEU A 270 1 18 HELIX 12 AB3 CYS A 317 MET A 327 1 11 HELIX 13 AB4 ASP A 332 PHE A 350 1 19 HELIX 14 AB5 GLU A 352 LEU A 357 1 6 HELIX 15 AB6 ASP A 364 LEU A 371 1 8 HELIX 16 AB7 THR A 381 ASP A 400 1 20 HELIX 17 AB8 PRO A 442 GLU A 444 5 3 HELIX 18 AB9 SER A 445 VAL A 464 1 20 SHEET 1 AA1 5 TRP A 11 GLU A 16 0 SHEET 2 AA1 5 SER A 20 HIS A 25 -1 O VAL A 22 N GLY A 15 SHEET 3 AA1 5 VAL A 30 PHE A 37 -1 O PHE A 34 N LEU A 21 SHEET 4 AA1 5 TYR A 111 PRO A 116 -1 O MET A 113 N ARG A 33 SHEET 5 AA1 5 VAL A 77 GLN A 79 -1 N VAL A 78 O ALA A 112 SHEET 1 AA2 4 TRP A 11 GLU A 16 0 SHEET 2 AA2 4 SER A 20 HIS A 25 -1 O VAL A 22 N GLY A 15 SHEET 3 AA2 4 VAL A 30 PHE A 37 -1 O PHE A 34 N LEU A 21 SHEET 4 AA2 4 ASP A 104 LEU A 105 -1 O ASP A 104 N PHE A 37 SHEET 1 AA3 4 LEU A 208 LYS A 212 0 SHEET 2 AA3 4 LEU A 133 ILE A 137 -1 N CYS A 134 O PHE A 211 SHEET 3 AA3 4 SER A 402 PRO A 409 -1 O LEU A 407 N LEU A 133 SHEET 4 AA3 4 LEU A 429 LEU A 436 -1 O ALA A 430 N SER A 408 LINK SG CYS A 159 ZN ZN A 503 1555 1555 1.99 LINK SG CYS A 162 ZN ZN A 503 1555 1555 2.50 LINK SG CYS A 181 ZN ZN A 503 1555 1555 2.36 LINK SG CYS A 291 ZN ZN A 503 1555 1555 2.41 LINK OD1 ASP A 437 MG MG A 504 1555 1555 2.34 LINK OD2 ASP A 437 MG MG A 505 1555 1555 2.21 LINK O1G ATP A 501 MG MG A 504 1555 1555 2.51 LINK O1B ATP A 501 MG MG A 504 1555 1555 2.39 LINK O3G ATP A 501 MG MG A 505 1555 1555 2.10 LINK O3B ATP A 501 MG MG A 505 1555 1555 2.93 LINK O2A ATP A 501 MG MG A 505 1555 1555 1.92 LINK O43 5MY A 502 MG MG A 504 1555 1555 2.77 LINK MG MG A 505 O HOH A 606 1555 1555 2.50 CISPEP 1 GLY A 287 PRO A 288 0 4.34 CISPEP 2 GLU A 334 GLY A 335 0 12.55 CISPEP 3 GLY A 361 PRO A 362 0 0.60 SITE 1 AC1 21 HIS A 14 GLU A 16 GLY A 17 ASN A 18 SITE 2 AC1 21 LYS A 19 SER A 20 VAL A 22 VAL A 31 SITE 3 AC1 21 ARG A 33 PRO A 116 ASN A 117 LEU A 118 SITE 4 AC1 21 GLU A 136 LYS A 138 ASP A 400 LEU A 436 SITE 5 AC1 21 ASP A 437 5MY A 502 MG A 504 MG A 505 SITE 6 AC1 21 HOH A 611 SITE 1 AC2 22 ASN A 18 LYS A 19 ARG A 100 LYS A 138 SITE 2 AC2 22 LYS A 140 ARG A 160 HIS A 164 LYS A 168 SITE 3 AC2 22 LYS A 173 ASN A 206 MET A 396 ASP A 400 SITE 4 AC2 22 LYS A 441 GLN A 449 LEU A 452 ATP A 501 SITE 5 AC2 22 MG A 504 HOH A 602 HOH A 603 HOH A 611 SITE 6 AC2 22 HOH A 614 HOH A 617 SITE 1 AC3 4 CYS A 159 CYS A 162 CYS A 181 CYS A 291 SITE 1 AC4 5 ASP A 437 ASP A 439 LYS A 441 ATP A 501 SITE 2 AC4 5 5MY A 502 SITE 1 AC5 3 ASP A 437 ATP A 501 HOH A 606 SITE 1 AC6 1 GLN A 369 CRYST1 60.162 71.495 61.197 90.00 111.37 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016622 0.000000 0.006503 0.00000 SCALE2 0.000000 0.013987 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017547 0.00000