HEADER TRANSFERASE 18-JAN-17 5MWM TITLE INOSITOL 1,3,4,5,6-PENTAKISPHOSPHATE 2-KINASE FROM M. MUSCULUS IN TITLE 2 COMPLEX WITH IP6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL-PENTAKISPHOSPHATE 2-KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: INOSITOL-1,3,4,5,6-PENTAKISPHOSPHATE 2-KINASE,INS(1,6)P5 2- COMPND 5 KINASE,INSP5 2-KINASE; COMPND 6 EC: 2.7.1.158; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: IPPK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR KEYWDS PROTEIN STRUCTURE, MAMMAL IPK, INOSITOL KINASES, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.FRANCO-ECHEVARRIA,J.SANZ-APARICIO,B.GONZALEZ REVDAT 5 17-JAN-24 5MWM 1 REMARK REVDAT 4 07-OCT-20 5MWM 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 HETSYN ATOM REVDAT 3 16-OCT-19 5MWM 1 REMARK REVDAT 2 05-JUL-17 5MWM 1 JRNL REVDAT 1 10-MAY-17 5MWM 0 JRNL AUTH E.FRANCO-ECHEVARRIA,J.SANZ-APARICIO,C.A.BREARLEY, JRNL AUTH 2 J.M.GONZALEZ-RUBIO,B.GONZALEZ JRNL TITL THE CRYSTAL STRUCTURE OF MAMMALIAN INOSITOL JRNL TITL 2 1,3,4,5,6-PENTAKISPHOSPHATE 2-KINASE REVEALS A NEW JRNL TITL 3 ZINC-BINDING SITE AND KEY FEATURES FOR PROTEIN FUNCTION. JRNL REF J. BIOL. CHEM. V. 292 10534 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28450399 JRNL DOI 10.1074/JBC.M117.780395 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 14393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 707 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1067 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.3920 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.6770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3278 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.91000 REMARK 3 B22 (A**2) : -1.02000 REMARK 3 B33 (A**2) : 6.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -12.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.229 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.370 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.670 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 39.012 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3390 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3285 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4577 ; 1.286 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7592 ; 0.926 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 399 ; 6.290 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;35.580 ;23.986 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 621 ;17.695 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;14.903 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 510 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3656 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 748 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1623 ; 2.572 ; 6.822 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1622 ; 2.566 ; 6.820 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2013 ; 4.449 ;10.194 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2014 ; 4.448 ;10.196 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1767 ; 2.162 ; 7.043 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1764 ; 2.103 ; 7.035 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2562 ; 3.969 ;10.475 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3613 ; 7.248 ;51.651 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3611 ; 7.271 ;51.671 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MWM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003121. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15186 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 57.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5MW8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM CHLORIDE, SODIUM ACETATE, REMARK 280 PEG 6000, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.81850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 GLU A -1 REMARK 465 PHE A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 GLY A 4 REMARK 465 LYS A 5 REMARK 465 MET A 6 REMARK 465 ASP A 7 REMARK 465 GLU A 8 REMARK 465 ASN A 9 REMARK 465 ARG A 28 REMARK 465 ASN A 40 REMARK 465 LYS A 41 REMARK 465 GLN A 122 REMARK 465 THR A 123 REMARK 465 PHE A 124 REMARK 465 HIS A 125 REMARK 465 PHE A 126 REMARK 465 ALA A 127 REMARK 465 GLU A 128 REMARK 465 GLY A 221 REMARK 465 ASP A 222 REMARK 465 ALA A 223 REMARK 465 ARG A 224 REMARK 465 SER A 225 REMARK 465 PRO A 226 REMARK 465 VAL A 227 REMARK 465 ALA A 228 REMARK 465 SER A 244 REMARK 465 ASN A 245 REMARK 465 GLY A 246 REMARK 465 LEU A 247 REMARK 465 ALA A 248 REMARK 465 GLY A 287 REMARK 465 ARG A 298 REMARK 465 SER A 299 REMARK 465 LEU A 300 REMARK 465 HIS A 301 REMARK 465 ASN A 302 REMARK 465 GLN A 303 REMARK 465 GLY A 304 REMARK 465 LYS A 305 REMARK 465 ASN A 306 REMARK 465 THR A 307 REMARK 465 SER A 308 REMARK 465 GLU A 309 REMARK 465 HIS A 310 REMARK 465 LEU A 411 REMARK 465 GLN A 412 REMARK 465 GLY A 413 REMARK 465 THR A 414 REMARK 465 SER A 415 REMARK 465 SER A 416 REMARK 465 ASP A 417 REMARK 465 GLN A 418 REMARK 465 ARG A 419 REMARK 465 SER A 425 REMARK 465 ARG A 426 REMARK 465 HIS A 465 REMARK 465 ALA A 466 REMARK 465 LYS A 467 REMARK 465 ASP A 468 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 297 CB - CA - C ANGL. DEV. = -14.8 DEGREES REMARK 500 GLY A 312 N - CA - C ANGL. DEV. = 18.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 106 89.62 -67.67 REMARK 500 LYS A 140 -160.25 71.11 REMARK 500 GLN A 165 -39.35 -36.51 REMARK 500 GLN A 205 -112.92 53.65 REMARK 500 TYR A 218 -95.24 -146.63 REMARK 500 PHE A 240 -72.12 -69.60 REMARK 500 ARG A 282 55.84 -106.29 REMARK 500 ASP A 364 -166.84 -113.66 REMARK 500 ASP A 373 98.38 -69.14 REMARK 500 LEU A 438 61.89 -107.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 159 SG REMARK 620 2 CYS A 162 SG 94.7 REMARK 620 3 CYS A 181 SG 112.8 118.6 REMARK 620 4 CYS A 291 SG 108.8 114.9 106.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IHP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5MW8 RELATED DB: PDB REMARK 900 5MW8 CONTAINS THE SAME PROTEIN COMPLEXED WITH OTHER LIGANDS DBREF 5MWM A 1 468 UNP Q6P1C1 IPPK_MOUSE 1 468 SEQADV 5MWM GLY A -2 UNP Q6P1C1 EXPRESSION TAG SEQADV 5MWM GLU A -1 UNP Q6P1C1 EXPRESSION TAG SEQADV 5MWM PHE A 0 UNP Q6P1C1 EXPRESSION TAG SEQRES 1 A 471 GLY GLU PHE MET GLU GLU GLY LYS MET ASP GLU ASN GLU SEQRES 2 A 471 TRP SER TYR HIS GLY GLU GLY ASN LYS SER LEU VAL VAL SEQRES 3 A 471 ALA HIS ALA GLN ARG CYS VAL VAL LEU ARG PHE LEU LYS SEQRES 4 A 471 PHE PRO PRO ASN LYS LYS LYS THR SER GLU GLU ILE LEU SEQRES 5 A 471 GLN HIS LEU GLN ASN ILE VAL ASP PHE GLY LYS ASN VAL SEQRES 6 A 471 MET LYS ASP PHE LEU GLY GLU ASN TYR VAL HIS CYS GLY SEQRES 7 A 471 GLU VAL VAL GLN LEU PRO LEU GLU PHE VAL LYS GLN LEU SEQRES 8 A 471 CYS LEU LYS ILE GLN CYS GLU ARG PRO GLU SER ARG CYS SEQRES 9 A 471 ASP LYS ASP LEU ASP THR PHE SER GLY TYR ALA MET CYS SEQRES 10 A 471 LEU PRO ASN LEU THR ARG LEU GLN THR PHE HIS PHE ALA SEQRES 11 A 471 GLU HIS ARG PRO ILE LEU CYS VAL GLU ILE LYS PRO LYS SEQRES 12 A 471 CYS GLY PHE ILE PRO PHE SER ASN ASP VAL THR HIS GLU SEQRES 13 A 471 MET LYS HIS LYS VAL CYS ARG TYR CYS MET HIS GLN HIS SEQRES 14 A 471 LEU LYS VAL ALA THR GLY LYS TRP LYS LYS ILE SER LYS SEQRES 15 A 471 TYR CYS PRO LEU ASP LEU TYR SER GLY ASN LYS GLN ARG SEQRES 16 A 471 MET HIS PHE ALA LEU ARG SER LEU LEU GLN GLU THR GLN SEQRES 17 A 471 ASN ASN LEU ARG ILE PHE LYS ASN GLY GLU LEU ILE TYR SEQRES 18 A 471 GLY CYS GLY ASP ALA ARG SER PRO VAL ALA ASP LEU LYS SEQRES 19 A 471 GLU LEU ALA HIS HIS LEU LYS PRO PHE PHE PHE PRO SER SEQRES 20 A 471 ASN GLY LEU ALA SER GLY PRO HIS CYS THR LYS ALA VAL SEQRES 21 A 471 ILE ARG GLU LEU VAL HIS VAL ILE THR ARG VAL LEU LEU SEQRES 22 A 471 SER SER SER GLU LYS ALA ARG ALA GLY ALA LEU ARG LEU SEQRES 23 A 471 GLY LEU GLN GLY PRO ARG VAL CYS GLU ALA SER PRO PHE SEQRES 24 A 471 SER ARG SER LEU HIS ASN GLN GLY LYS ASN THR SER GLU SEQRES 25 A 471 HIS SER GLY LEU PRO LYS GLY CYS LEU LEU TYR LYS THR SEQRES 26 A 471 LEU GLN VAL GLN MET LEU ASP GLN LEU ASP ILE GLU GLY SEQRES 27 A 471 LEU TYR PRO LEU TYR LYS ARG VAL GLU GLN TYR LEU GLU SEQRES 28 A 471 GLU PHE PRO GLU GLU ARG LYS THR LEU GLN ILE ASP GLY SEQRES 29 A 471 PRO TYR ASP GLU VAL PHE TYR GLN LYS LEU LEU ASP LEU SEQRES 30 A 471 SER THR GLU ASP ASP GLY THR VAL ALA PHE ALA LEU THR SEQRES 31 A 471 LYS VAL GLN GLN TYR ARG VAL ALA MET THR ALA LYS ASP SEQRES 32 A 471 CYS SER ILE MET ILE ALA LEU SER PRO CYS LEU GLN GLY SEQRES 33 A 471 THR SER SER ASP GLN ARG PRO VAL ILE PRO SER SER ARG SEQRES 34 A 471 SER ARG LEU ALA PHE SER VAL SER VAL LEU ASP LEU ASP SEQRES 35 A 471 LEU LYS PRO TYR GLU SER ILE PRO HIS GLN TYR LYS LEU SEQRES 36 A 471 ASP SER LYS ILE VAL ASN TYR TYR SER LYS THR VAL HIS SEQRES 37 A 471 ALA LYS ASP HET IHP A 501 36 HET ZN A 502 1 HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETNAM ZN ZINC ION HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 2 IHP C6 H18 O24 P6 FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *26(H2 O) HELIX 1 AA1 THR A 44 VAL A 62 1 19 HELIX 2 AA2 VAL A 62 GLY A 68 1 7 HELIX 3 AA3 PRO A 81 GLN A 93 1 13 HELIX 4 AA4 GLU A 153 LYS A 157 5 5 HELIX 5 AA5 CYS A 159 GLY A 172 1 14 HELIX 6 AA6 CYS A 181 SER A 187 1 7 HELIX 7 AA7 ASN A 189 GLU A 203 1 15 HELIX 8 AA8 LEU A 230 PHE A 242 1 13 HELIX 9 AA9 CYS A 253 LEU A 270 1 18 HELIX 10 AB1 CYS A 317 LEU A 328 1 12 HELIX 11 AB2 ASP A 332 PHE A 350 1 19 HELIX 12 AB3 GLU A 352 LEU A 357 1 6 HELIX 13 AB4 ASP A 364 LEU A 372 1 9 HELIX 14 AB5 THR A 381 LYS A 399 1 19 HELIX 15 AB6 PRO A 442 GLU A 444 5 3 HELIX 16 AB7 SER A 445 VAL A 464 1 20 SHEET 1 AA1 4 TRP A 11 GLU A 16 0 SHEET 2 AA1 4 SER A 20 HIS A 25 -1 O ALA A 24 N SER A 12 SHEET 3 AA1 4 VAL A 31 PHE A 37 -1 O PHE A 34 N LEU A 21 SHEET 4 AA1 4 ASP A 104 LEU A 105 -1 O ASP A 104 N PHE A 37 SHEET 1 AA2 2 VAL A 77 GLN A 79 0 SHEET 2 AA2 2 TYR A 111 MET A 113 -1 O ALA A 112 N VAL A 78 SHEET 1 AA3 5 GLU A 215 LEU A 216 0 SHEET 2 AA3 5 LEU A 208 LYS A 212 -1 N LYS A 212 O GLU A 215 SHEET 3 AA3 5 LEU A 133 ILE A 137 -1 N CYS A 134 O PHE A 211 SHEET 4 AA3 5 SER A 402 SER A 408 -1 O LEU A 407 N LEU A 133 SHEET 5 AA3 5 ALA A 430 LEU A 436 -1 O LEU A 436 N SER A 402 LINK SG CYS A 159 ZN ZN A 502 1555 1555 2.24 LINK SG CYS A 162 ZN ZN A 502 1555 1555 2.36 LINK SG CYS A 181 ZN ZN A 502 1555 1555 2.19 LINK SG CYS A 291 ZN ZN A 502 1555 1555 2.69 CISPEP 1 GLY A 250 PRO A 251 0 -15.34 CISPEP 2 GLU A 334 GLY A 335 0 8.30 CISPEP 3 GLY A 361 PRO A 362 0 4.02 CISPEP 4 PRO A 409 CYS A 410 0 12.18 SITE 1 AC1 17 GLY A 17 ASN A 18 LYS A 19 ARG A 100 SITE 2 AC1 17 LYS A 138 LYS A 140 HIS A 164 LYS A 168 SITE 3 AC1 17 LYS A 173 ASN A 206 ASP A 400 ASP A 437 SITE 4 AC1 17 LYS A 441 GLN A 449 HOH A 602 HOH A 607 SITE 5 AC1 17 HOH A 609 SITE 1 AC2 4 CYS A 159 CYS A 162 CYS A 181 CYS A 291 CRYST1 60.550 71.637 61.822 90.00 111.66 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016515 0.000000 0.006559 0.00000 SCALE2 0.000000 0.013959 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017404 0.00000