HEADER TRANSFERASE 22-JAN-17 5MX9 TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF THE MCR-2 CATALYTIC DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLETHANOLAMINE TRANSFERASE MCR-2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MCR-2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: SOLUBL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: POPIN-F KEYWDS MCR-1, COLISTIN, ANTIBIOTIC RESISTANCE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.HINCHLIFFE,K.COATES,T.R.WALSH,J.SPENCER REVDAT 3 17-JAN-24 5MX9 1 LINK REVDAT 2 23-AUG-17 5MX9 1 JRNL REVDAT 1 09-AUG-17 5MX9 0 JRNL AUTH K.COATES,T.R.WALSH,J.SPENCER,P.HINCHLIFFE JRNL TITL 1.12 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE CATALYTIC JRNL TITL 2 DOMAIN OF THE PLASMID-MEDIATED COLISTIN RESISTANCE JRNL TITL 3 DETERMINANT MCR-2. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 73 443 2017 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 28777086 JRNL DOI 10.1107/S2053230X17009669 REMARK 2 REMARK 2 RESOLUTION. 1.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 108679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.145 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 5480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5934 - 3.4797 1.00 3728 192 0.1340 0.1387 REMARK 3 2 3.4797 - 2.7620 1.00 3573 184 0.1277 0.1414 REMARK 3 3 2.7620 - 2.4129 1.00 3493 211 0.1257 0.1446 REMARK 3 4 2.4129 - 2.1923 1.00 3512 174 0.1210 0.1316 REMARK 3 5 2.1923 - 2.0351 1.00 3464 194 0.1173 0.1323 REMARK 3 6 2.0351 - 1.9151 1.00 3493 174 0.1207 0.1345 REMARK 3 7 1.9151 - 1.8192 1.00 3480 173 0.1222 0.1231 REMARK 3 8 1.8192 - 1.7400 1.00 3447 186 0.1302 0.1353 REMARK 3 9 1.7400 - 1.6730 1.00 3461 175 0.1265 0.1345 REMARK 3 10 1.6730 - 1.6153 1.00 3424 193 0.1263 0.1264 REMARK 3 11 1.6153 - 1.5648 1.00 3462 184 0.1268 0.1428 REMARK 3 12 1.5648 - 1.5201 1.00 3427 176 0.1285 0.1410 REMARK 3 13 1.5201 - 1.4800 1.00 3437 160 0.1313 0.1503 REMARK 3 14 1.4800 - 1.4439 1.00 3431 179 0.1370 0.1664 REMARK 3 15 1.4439 - 1.4111 1.00 3459 172 0.1387 0.1584 REMARK 3 16 1.4111 - 1.3811 1.00 3428 209 0.1392 0.1426 REMARK 3 17 1.3811 - 1.3534 1.00 3428 153 0.1442 0.1599 REMARK 3 18 1.3534 - 1.3279 1.00 3432 190 0.1458 0.1613 REMARK 3 19 1.3279 - 1.3042 1.00 3400 178 0.1491 0.1563 REMARK 3 20 1.3042 - 1.2821 1.00 3409 192 0.1478 0.1571 REMARK 3 21 1.2821 - 1.2614 1.00 3424 193 0.1499 0.1720 REMARK 3 22 1.2614 - 1.2420 1.00 3353 176 0.1581 0.1686 REMARK 3 23 1.2420 - 1.2237 1.00 3445 199 0.1582 0.1706 REMARK 3 24 1.2237 - 1.2065 1.00 3396 186 0.1499 0.1730 REMARK 3 25 1.2065 - 1.1902 1.00 3417 187 0.1603 0.1773 REMARK 3 26 1.1902 - 1.1747 1.00 3369 198 0.1621 0.1831 REMARK 3 27 1.1747 - 1.1600 1.00 3395 185 0.1658 0.1962 REMARK 3 28 1.1600 - 1.1461 0.99 3379 186 0.1765 0.1815 REMARK 3 29 1.1461 - 1.1327 0.98 3354 171 0.1775 0.1896 REMARK 3 30 1.1327 - 1.1200 0.96 3279 150 0.1954 0.1921 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2648 REMARK 3 ANGLE : 1.382 3599 REMARK 3 CHIRALITY : 0.083 392 REMARK 3 PLANARITY : 0.005 475 REMARK 3 DIHEDRAL : 13.457 955 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 217 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0637 -6.9826 -2.4462 REMARK 3 T TENSOR REMARK 3 T11: 0.0890 T22: 0.1000 REMARK 3 T33: 0.0883 T12: -0.0095 REMARK 3 T13: -0.0052 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 0.5559 L22: 0.7623 REMARK 3 L33: 1.1269 L12: -0.3007 REMARK 3 L13: 0.4279 L23: 0.3965 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: -0.0921 S13: -0.0727 REMARK 3 S21: 0.1956 S22: 0.0446 S23: -0.0256 REMARK 3 S31: 0.1097 S32: 0.0049 S33: -0.0263 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 318 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3314 -2.5361 -20.4042 REMARK 3 T TENSOR REMARK 3 T11: 0.0647 T22: 0.0831 REMARK 3 T33: 0.0818 T12: 0.0034 REMARK 3 T13: 0.0044 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.4927 L22: 0.9523 REMARK 3 L33: 0.5775 L12: 0.2257 REMARK 3 L13: -0.0576 L23: -0.4747 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: 0.0006 S13: -0.0178 REMARK 3 S21: -0.0044 S22: -0.0255 S23: -0.0577 REMARK 3 S31: 0.0130 S32: 0.0426 S33: 0.0259 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 319 THROUGH 356 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4266 -2.7394 -11.7708 REMARK 3 T TENSOR REMARK 3 T11: 0.0814 T22: 0.0936 REMARK 3 T33: 0.0832 T12: -0.0059 REMARK 3 T13: 0.0090 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.4783 L22: 0.8263 REMARK 3 L33: 0.4633 L12: -0.3674 REMARK 3 L13: 0.1819 L23: -0.2109 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: -0.0620 S13: -0.0305 REMARK 3 S21: 0.0481 S22: 0.0111 S23: 0.0699 REMARK 3 S31: 0.0027 S32: -0.0470 S33: -0.0146 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 357 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3212 8.8500 -13.7588 REMARK 3 T TENSOR REMARK 3 T11: 0.0693 T22: 0.0847 REMARK 3 T33: 0.0879 T12: 0.0061 REMARK 3 T13: 0.0148 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 2.1034 L22: 1.2197 REMARK 3 L33: 6.3831 L12: -0.9717 REMARK 3 L13: 2.8800 L23: -1.6293 REMARK 3 S TENSOR REMARK 3 S11: -0.0591 S12: -0.1861 S13: -0.0273 REMARK 3 S21: 0.0638 S22: 0.0705 S23: 0.0460 REMARK 3 S31: -0.1282 S32: -0.1939 S33: -0.0185 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 380 THROUGH 423 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6827 7.5788 -25.6447 REMARK 3 T TENSOR REMARK 3 T11: 0.0553 T22: 0.0643 REMARK 3 T33: 0.0884 T12: 0.0044 REMARK 3 T13: 0.0100 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.7581 L22: 0.7759 REMARK 3 L33: 2.5721 L12: -0.3025 REMARK 3 L13: 0.8677 L23: -0.9214 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: 0.0192 S13: 0.0084 REMARK 3 S21: -0.0180 S22: 0.0361 S23: 0.0337 REMARK 3 S31: -0.0331 S32: -0.0532 S33: -0.0650 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 424 THROUGH 452 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2316 12.0754 -21.7469 REMARK 3 T TENSOR REMARK 3 T11: 0.0720 T22: 0.0702 REMARK 3 T33: 0.0932 T12: -0.0024 REMARK 3 T13: 0.0027 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.5243 L22: 0.5486 REMARK 3 L33: 6.2045 L12: -0.0544 REMARK 3 L13: 0.8088 L23: -0.1590 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: 0.0118 S13: 0.0325 REMARK 3 S21: 0.0324 S22: 0.0036 S23: -0.0199 REMARK 3 S31: -0.1399 S32: -0.0011 S33: -0.0051 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 453 THROUGH 486 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4162 -0.0202 -25.2929 REMARK 3 T TENSOR REMARK 3 T11: 0.0643 T22: 0.0749 REMARK 3 T33: 0.0895 T12: 0.0003 REMARK 3 T13: 0.0027 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.4750 L22: 0.6654 REMARK 3 L33: 1.6449 L12: 0.0475 REMARK 3 L13: 0.3433 L23: 0.0723 REMARK 3 S TENSOR REMARK 3 S11: 0.0118 S12: 0.0274 S13: -0.0078 REMARK 3 S21: -0.0517 S22: -0.0138 S23: -0.0429 REMARK 3 S31: -0.0248 S32: -0.0167 S33: 0.0061 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 487 THROUGH 513 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1144 3.2850 -17.3292 REMARK 3 T TENSOR REMARK 3 T11: 0.0818 T22: 0.0935 REMARK 3 T33: 0.1044 T12: -0.0107 REMARK 3 T13: -0.0022 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 0.9967 L22: 1.2680 REMARK 3 L33: 0.6115 L12: 0.1471 REMARK 3 L13: 0.2810 L23: 0.6288 REMARK 3 S TENSOR REMARK 3 S11: -0.0279 S12: -0.0333 S13: 0.0424 REMARK 3 S21: 0.0934 S22: -0.0001 S23: -0.0865 REMARK 3 S31: 0.0157 S32: 0.1297 S33: 0.0039 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 514 THROUGH 540 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1228 -6.5978 -9.7612 REMARK 3 T TENSOR REMARK 3 T11: 0.0679 T22: 0.1040 REMARK 3 T33: 0.1046 T12: 0.0164 REMARK 3 T13: -0.0127 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 0.6763 L22: 1.2243 REMARK 3 L33: 3.0830 L12: 0.8189 REMARK 3 L13: 0.0160 L23: -0.0034 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: -0.0366 S13: -0.1194 REMARK 3 S21: 0.0847 S22: -0.0374 S23: -0.1684 REMARK 3 S31: 0.1035 S32: 0.2007 S33: -0.0018 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MX9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003009. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108679 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.120 REMARK 200 RESOLUTION RANGE LOW (A) : 58.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LRN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 0.1 M KSCN, 30% PEG2000MME; REMARK 280 PROTEIN: 15 MG/ML, 50 MM HEPES PH7.5, 150 MM NACL, 0.1MM ZNCL2, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.40900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.75450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.65500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.75450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.40900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.65500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 332 HO2 GOL A 604 1.19 REMARK 500 HH TYR A 308 O HOH A 702 1.54 REMARK 500 O HOH A 739 O HOH A 951 1.75 REMARK 500 O HOH A 1049 O HOH A 1076 1.84 REMARK 500 O HOH A 946 O HOH A 1003 1.87 REMARK 500 O HOH A 705 O HOH A 997 1.92 REMARK 500 O HOH A 852 O HOH A 865 1.92 REMARK 500 O HOH A 1037 O HOH A 1042 1.99 REMARK 500 O HOH A 724 O HOH A 857 2.02 REMARK 500 O HOH A 1093 O HOH A 1116 2.04 REMARK 500 O HOH A 871 O HOH A 963 2.08 REMARK 500 O HOH A 841 O HOH A 908 2.10 REMARK 500 O HOH A 930 O HOH A 1006 2.18 REMARK 500 O GLY A 271 O HOH A 701 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 728 O HOH A 1002 3444 1.88 REMARK 500 O HOH A 903 O HOH A 964 3444 1.89 REMARK 500 O HOH A 729 O HOH A 902 1655 2.06 REMARK 500 O HOH A 814 O HOH A 1037 3544 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 504 CD - CE - NZ ANGL. DEV. = 15.0 DEGREES REMARK 500 ARG A 535 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 223 40.17 -142.00 REMARK 500 ASN A 329 -60.24 -136.63 REMARK 500 SER A 330 -82.35 -165.88 REMARK 500 LEU A 477 -151.64 63.20 REMARK 500 HIS A 478 -151.64 -137.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 246 OE1 REMARK 620 2 GLU A 246 OE2 56.4 REMARK 620 3 THR A 285 OG1 84.9 114.8 REMARK 620 4 ASP A 465 OD2 84.6 120.6 102.3 REMARK 620 5 HIS A 466 NE2 151.0 99.6 122.6 97.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 395 NE2 REMARK 620 2 GLU A 405 OE2 16.9 REMARK 620 3 HIS A 478 NE2 106.9 90.1 REMARK 620 4 HOH A 715 O 118.3 129.7 112.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 605 DBREF1 5MX9 A 219 540 UNP A0A1C3NEV1_ECOLX DBREF2 5MX9 A A0A1C3NEV1 217 538 SEQADV 5MX9 GLY A 217 UNP A0A1C3NEV EXPRESSION TAG SEQADV 5MX9 PRO A 218 UNP A0A1C3NEV EXPRESSION TAG SEQRES 1 A 324 GLY PRO THR ILE TYR HIS ALA LYS ASP ALA VAL GLN THR SEQRES 2 A 324 THR LYS PRO SER GLU ARG LYS PRO ARG LEU VAL VAL PHE SEQRES 3 A 324 VAL VAL GLY GLU THR ALA ARG ALA ASP HIS VAL GLN PHE SEQRES 4 A 324 ASN GLY TYR GLY ARG GLU THR PHE PRO GLN LEU ALA LYS SEQRES 5 A 324 VAL ASP GLY LEU ALA ASN PHE SER GLN VAL THR SER CYS SEQRES 6 A 324 GLY THR SER THR ALA TYR SER VAL PRO CYS MET PHE SER SEQRES 7 A 324 TYR LEU GLY GLN ASP ASP TYR ASP VAL ASP THR ALA LYS SEQRES 8 A 324 TYR GLN GLU ASN VAL LEU ASP THR LEU ASP ARG LEU GLY SEQRES 9 A 324 VAL GLY ILE LEU TRP ARG ASP ASN ASN SER ASP SER LYS SEQRES 10 A 324 GLY VAL MET ASP LYS LEU PRO ALA THR GLN TYR PHE ASP SEQRES 11 A 324 TYR LYS SER ALA THR ASN ASN THR ILE CYS ASN THR ASN SEQRES 12 A 324 PRO TYR ASN GLU CYS ARG ASP VAL GLY MET LEU VAL GLY SEQRES 13 A 324 LEU ASP ASP TYR VAL SER ALA ASN ASN GLY LYS ASP MET SEQRES 14 A 324 LEU ILE MET LEU HIS GLN MET GLY ASN HIS GLY PRO ALA SEQRES 15 A 324 TYR PHE LYS ARG TYR ASP GLU GLN PHE ALA LYS PHE THR SEQRES 16 A 324 PRO VAL CYS GLU GLY ASN GLU LEU ALA LYS CYS GLU HIS SEQRES 17 A 324 GLN SER LEU ILE ASN ALA TYR ASP ASN ALA LEU LEU ALA SEQRES 18 A 324 THR ASP ASP PHE ILE ALA LYS SER ILE ASP TRP LEU LYS SEQRES 19 A 324 THR HIS GLU ALA ASN TYR ASP VAL ALA MET LEU TYR VAL SEQRES 20 A 324 SER ASP HIS GLY GLU SER LEU GLY GLU ASN GLY VAL TYR SEQRES 21 A 324 LEU HIS GLY MET PRO ASN ALA PHE ALA PRO LYS GLU GLN SEQRES 22 A 324 ARG ALA VAL PRO ALA PHE PHE TRP SER ASN ASN THR THR SEQRES 23 A 324 PHE LYS PRO THR ALA SER ASP THR VAL LEU THR HIS ASP SEQRES 24 A 324 ALA ILE THR PRO THR LEU LEU LYS LEU PHE ASP VAL THR SEQRES 25 A 324 ALA GLY LYS VAL LYS ASP ARG ALA ALA PHE ILE GLN HET ZN A 601 1 HET ZN A 602 1 HET GOL A 603 14 HET GOL A 604 14 HET GOL A 605 14 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *419(H2 O) HELIX 1 AA1 ARG A 249 GLY A 257 5 9 HELIX 2 AA2 GLN A 265 VAL A 269 5 5 HELIX 3 AA3 SER A 284 PHE A 293 1 10 HELIX 4 AA4 LEU A 296 TYR A 301 1 6 HELIX 5 AA5 THR A 305 GLN A 309 5 5 HELIX 6 AA6 ASN A 311 LEU A 319 1 9 HELIX 7 AA7 PRO A 340 THR A 342 5 3 HELIX 8 AA8 ARG A 365 VAL A 371 5 7 HELIX 9 AA9 GLY A 372 ASN A 380 1 9 HELIX 10 AB1 ALA A 398 ARG A 402 5 5 HELIX 11 AB2 ASP A 404 ALA A 408 5 5 HELIX 12 AB3 GLU A 418 CYS A 422 5 5 HELIX 13 AB4 GLU A 423 THR A 451 1 29 HELIX 14 AB5 GLU A 472 GLY A 474 5 3 HELIX 15 AB6 PRO A 486 ARG A 490 5 5 HELIX 16 AB7 ALA A 516 PHE A 525 1 10 HELIX 17 AB8 ALA A 529 LYS A 533 5 5 SHEET 1 AA1 2 VAL A 227 GLN A 228 0 SHEET 2 AA1 2 VAL A 527 THR A 528 -1 O THR A 528 N VAL A 227 SHEET 1 AA2 7 ALA A 273 PHE A 275 0 SHEET 2 AA2 7 ALA A 494 SER A 498 -1 O PHE A 496 N ALA A 273 SHEET 3 AA2 7 ASP A 457 SER A 464 -1 N MET A 460 O TRP A 497 SHEET 4 AA2 7 ARG A 238 GLY A 245 1 N VAL A 243 O LEU A 461 SHEET 5 AA2 7 MET A 385 HIS A 390 1 O ILE A 387 N VAL A 240 SHEET 6 AA2 7 GLY A 322 ASP A 327 1 N LEU A 324 O MET A 388 SHEET 7 AA2 7 TYR A 344 ASP A 346 1 O PHE A 345 N ASP A 327 SHEET 1 AA3 2 VAL A 278 THR A 279 0 SHEET 2 AA3 2 LEU A 512 THR A 513 1 O LEU A 512 N THR A 279 SHEET 1 AA4 2 SER A 469 LEU A 470 0 SHEET 2 AA4 2 TYR A 476 LEU A 477 -1 O LEU A 477 N SER A 469 SSBOND 1 CYS A 281 CYS A 291 1555 1555 2.08 SSBOND 2 CYS A 356 CYS A 364 1555 1555 2.04 SSBOND 3 CYS A 414 CYS A 422 1555 1555 2.02 LINK OE1 GLU A 246 ZN ZN A 602 1555 1555 2.57 LINK OE2 GLU A 246 ZN ZN A 602 1555 1555 1.92 LINK OG1 THR A 285 ZN ZN A 602 1555 1555 1.92 LINK NE2 HIS A 395 ZN ZN A 601 1555 1555 2.00 LINK OE2 GLU A 405 ZN ZN A 601 1555 3454 1.95 LINK OD2 ASP A 465 ZN ZN A 602 1555 1555 1.92 LINK NE2 HIS A 466 ZN ZN A 602 1555 1555 2.04 LINK NE2 HIS A 478 ZN ZN A 601 1555 1555 1.93 LINK ZN ZN A 601 O HOH A 715 1555 1555 1.91 CISPEP 1 GLY A 396 PRO A 397 0 4.70 CISPEP 2 THR A 411 PRO A 412 0 -0.67 SITE 1 AC1 4 HIS A 395 GLU A 405 HIS A 478 HOH A 715 SITE 1 AC2 4 GLU A 246 THR A 285 ASP A 465 HIS A 466 SITE 1 AC3 8 ARG A 238 THR A 502 LYS A 523 ASP A 526 SITE 2 AC3 8 GLN A 540 HOH A 732 HOH A 930 HOH A 959 SITE 1 AC4 8 ASP A 331 SER A 332 LYS A 333 GLY A 334 SITE 2 AC4 8 ASP A 337 TYR A 344 HOH A 784 HOH A 822 SITE 1 AC5 5 GLU A 418 LEU A 419 ALA A 420 HOH A 717 SITE 2 AC5 5 HOH A 873 CRYST1 44.818 53.310 117.509 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022313 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018758 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008510 0.00000