HEADER PLANT PROTEIN 22-JAN-17 5MXB TITLE CRYSTAL STRUCTURE OF YELLOW LUPIN LLPR-10.2B PROTEIN IN COMPLEX WITH TITLE 2 MELATONIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLASS 10 PLANT PATHOGENESIS-RELATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PR10.2B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LUPINUS LUTEUS; SOURCE 3 ORGANISM_COMMON: YELLOW LUPINE; SOURCE 4 ORGANISM_TAXID: 3873; SOURCE 5 GENE: PR10.2B, YPR10.2B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET3A KEYWDS PLANT PROTEIN, PHYTOHORMON BINDING PROTEIN, PR-10 PROTEIN, MELATONIN EXPDTA X-RAY DIFFRACTION AUTHOR J.SLIWIAK,M.SIKORSKI,M.JASKOLSKI REVDAT 4 17-JAN-24 5MXB 1 REMARK REVDAT 3 08-AUG-18 5MXB 1 REMARK REVDAT 2 20-JUN-18 5MXB 1 JRNL REVDAT 1 18-APR-18 5MXB 0 JRNL AUTH J.SLIWIAK,M.SIKORSKI,M.JASKOLSKI JRNL TITL PR-10 PROTEINS AS POTENTIAL MEDIATORS OF MELATONIN-CYTOKININ JRNL TITL 2 CROSS-TALK IN PLANTS: CRYSTALLOGRAPHIC STUDIES OF LLPR-10.2B JRNL TITL 3 ISOFORM FROM YELLOW LUPINE. JRNL REF FEBS J. V. 285 1907 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 29630775 JRNL DOI 10.1111/FEBS.14455 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.SLIWIAK,Z.DAUTER,M.JASKOLSKI REMARK 1 TITL CRYSTAL STRUCTURE OF HYP-1, A HYPERICUM PERFORATUM PR-10 REMARK 1 TITL 2 PROTEIN, IN COMPLEX WITH MELATONIN. REMARK 1 REF FRONT PLANT SCI V. 7 668 2016 REMARK 1 REFN ESSN 1664-462X REMARK 1 PMID 27242869 REMARK 1 DOI 10.3389/FPLS.2016.00668 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.SLIWIAK,R.DOLOT,K.MICHALSKA,K.SZPOTKOWSKI,G.BUJACZ, REMARK 1 AUTH 2 M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL CRYSTALLOGRAPHIC AND CD PROBING OF LIGAND-INDUCED REMARK 1 TITL 2 CONFORMATIONAL CHANGES IN A PLANT PR-10 PROTEIN. REMARK 1 REF J. STRUCT. BIOL. V. 193 55 2016 REMARK 1 REFN ESSN 1095-8657 REMARK 1 PMID 26644353 REMARK 1 DOI 10.1016/J.JSB.2015.11.008 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.RUSZKOWSKI,J.SLIWIAK,A.CIESIELSKA,J.BARCISZEWSKI, REMARK 1 AUTH 2 M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL SPECIFIC BINDING OF GIBBERELLIC ACID BY CYTOKININ-SPECIFIC REMARK 1 TITL 2 BINDING PROTEINS: A NEW ASPECT OF PLANT HORMONE-BINDING REMARK 1 TITL 3 PROTEINS WITH THE PR-10 FOLD. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 70 2032 2014 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 25004979 REMARK 1 DOI 10.1107/S1399004714010578 REMARK 1 REFERENCE 4 REMARK 1 AUTH J.SLIWIAK,Z.DAUTER,M.KOWIEL,A.J.MCCOY,R.J.READ,M.JASKOLSKI REMARK 1 TITL ANS COMPLEX OF ST JOHN'S WORT PR-10 PROTEIN WITH 28 COPIES REMARK 1 TITL 2 IN THE ASYMMETRIC UNIT: A FIENDISH COMBINATION OF REMARK 1 TITL 3 PSEUDOSYMMETRY WITH TETARTOHEDRAL TWINNING. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 71 829 2015 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 25849394 REMARK 1 DOI 10.1107/S1399004715001388 REMARK 1 REFERENCE 5 REMARK 1 AUTH H.FERNANDES,A.BUJACZ,G.BUJACZ,F.JELEN,M.JASINSKI, REMARK 1 AUTH 2 P.KACHLICKI,J.OTLEWSKI,M.M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL CYTOKININ-INDUCED STRUCTURAL ADAPTABILITY OF A LUPINUS REMARK 1 TITL 2 LUTEUS PR-10 PROTEIN. REMARK 1 REF FEBS J. V. 276 1596 2009 REMARK 1 REFN ISSN 1742-4658 REMARK 1 PMID 19220853 REMARK 1 DOI 10.1111/J.1742-4658.2009.06892.X REMARK 1 REFERENCE 6 REMARK 1 AUTH H.FERNANDES,O.PASTERNAK,G.BUJACZ,A.BUJACZ,M.M.SIKORSKI, REMARK 1 AUTH 2 M.JASKOLSKI REMARK 1 TITL LUPINUS LUTEUS PATHOGENESIS-RELATED PROTEIN AS A RESERVOIR REMARK 1 TITL 2 FOR CYTOKININ. REMARK 1 REF J. MOL. BIOL. V. 378 1040 2008 REMARK 1 REFN ESSN 1089-8638 REMARK 1 PMID 18406424 REMARK 1 DOI 10.1016/J.JMB.2008.03.027 REMARK 1 REFERENCE 7 REMARK 1 AUTH O.PASTERNAK,J.BIESIADKA,R.DOLOT,L.HANDSCHUH,G.BUJACZ, REMARK 1 AUTH 2 M.M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL STRUCTURE OF A YELLOW LUPIN PATHOGENESIS-RELATED PR-10 REMARK 1 TITL 2 PROTEIN BELONGING TO A NOVEL SUBCLASS. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 61 99 2005 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15608381 REMARK 1 DOI 10.1107/S0907444904028173 REMARK 1 REFERENCE 8 REMARK 1 AUTH J.BIESIADKA,G.BUJACZ,M.M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL CRYSTAL STRUCTURES OF TWO HOMOLOGOUS PATHOGENESIS-RELATED REMARK 1 TITL 2 PROTEINS FROM YELLOW LUPINE. REMARK 1 REF J. MOL. BIOL. V. 319 1223 2002 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 12079359 REMARK 1 DOI 10.1016/S0022-2836(02)00385-6 REMARK 1 REFERENCE 9 REMARK 1 AUTH O.PASTERNAK,G.D.BUJACZ,Y.FUJIMOTO,Y.HASHIMOTO,F.JELEN, REMARK 1 AUTH 2 J.OTLEWSKI,M.M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL CRYSTAL STRUCTURE OF VIGNA RADIATA CYTOKININ-SPECIFIC REMARK 1 TITL 2 BINDING PROTEIN IN COMPLEX WITH ZEATIN. REMARK 1 REF PLANT CELL V. 18 2622 2006 REMARK 1 REFN ISSN 1040-4651 REMARK 1 PMID 16998071 REMARK 1 DOI 10.1105/TPC.105.037119 REMARK 1 REFERENCE 10 REMARK 1 AUTH M.RUSZKOWSKI,K.SZPOTKOWSKI,M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL THE LANDSCAPE OF CYTOKININ BINDING BY A PLANT NODULIN. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 69 2365 2013 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 24311578 REMARK 1 DOI 10.1107/S0907444913021975 REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 32068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1095 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2345 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1163 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.81000 REMARK 3 B22 (A**2) : -0.81000 REMARK 3 B33 (A**2) : 2.63000 REMARK 3 B12 (A**2) : -0.81000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.681 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1294 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1236 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1760 ; 1.933 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2877 ; 0.793 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 171 ; 5.793 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 50 ;40.850 ;26.800 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 222 ;14.000 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 1 ; 5.784 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 194 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1504 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 263 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 17 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8271 -16.3569 -8.2600 REMARK 3 T TENSOR REMARK 3 T11: 0.1197 T22: 0.0919 REMARK 3 T33: 0.0389 T12: 0.0006 REMARK 3 T13: -0.0461 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 3.4802 L22: 4.5785 REMARK 3 L33: 1.6880 L12: -2.8727 REMARK 3 L13: 1.1228 L23: -1.1845 REMARK 3 S TENSOR REMARK 3 S11: 0.0611 S12: 0.0480 S13: -0.2106 REMARK 3 S21: -0.2527 S22: 0.1325 S23: 0.3263 REMARK 3 S31: 0.0781 S32: -0.0056 S33: -0.1937 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 24.7530 -10.5665 6.8338 REMARK 3 T TENSOR REMARK 3 T11: 0.0816 T22: 0.0716 REMARK 3 T33: 0.0453 T12: -0.0091 REMARK 3 T13: -0.0111 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 1.1741 L22: 1.0416 REMARK 3 L33: 1.1309 L12: 0.2692 REMARK 3 L13: -0.2155 L23: -0.5992 REMARK 3 S TENSOR REMARK 3 S11: 0.0531 S12: -0.0940 S13: 0.1199 REMARK 3 S21: 0.0441 S22: 0.0156 S23: 0.1702 REMARK 3 S31: -0.1030 S32: -0.0289 S33: -0.0687 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 32.2290 -14.3913 4.8002 REMARK 3 T TENSOR REMARK 3 T11: 0.1191 T22: 0.0928 REMARK 3 T33: 0.0042 T12: -0.0122 REMARK 3 T13: -0.0121 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.5512 L22: 3.2984 REMARK 3 L33: 5.2172 L12: 0.0724 REMARK 3 L13: 0.2228 L23: -3.6118 REMARK 3 S TENSOR REMARK 3 S11: 0.1310 S12: -0.1131 S13: -0.0520 REMARK 3 S21: -0.1779 S22: -0.0259 S23: 0.0568 REMARK 3 S31: 0.1513 S32: 0.2040 S33: -0.1051 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 126 REMARK 3 ORIGIN FOR THE GROUP (A): 34.0636 -19.1385 -2.8250 REMARK 3 T TENSOR REMARK 3 T11: 0.1600 T22: 0.1247 REMARK 3 T33: 0.0187 T12: 0.0233 REMARK 3 T13: -0.0376 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 2.6707 L22: 3.2322 REMARK 3 L33: 1.5100 L12: -1.5057 REMARK 3 L13: 0.6322 L23: -1.0599 REMARK 3 S TENSOR REMARK 3 S11: 0.0563 S12: 0.1177 S13: -0.1433 REMARK 3 S21: -0.0318 S22: 0.0138 S23: 0.1504 REMARK 3 S31: 0.0029 S32: 0.2724 S33: -0.0700 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1309 -19.5466 -2.1799 REMARK 3 T TENSOR REMARK 3 T11: 0.0988 T22: 0.0827 REMARK 3 T33: 0.0451 T12: -0.0086 REMARK 3 T13: -0.0204 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 4.6366 L22: 4.0404 REMARK 3 L33: 0.8168 L12: -2.6423 REMARK 3 L13: -0.6225 L23: 0.3539 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: 0.2184 S13: 0.1456 REMARK 3 S21: -0.3884 S22: -0.0422 S23: 0.1884 REMARK 3 S31: 0.0359 S32: -0.0468 S33: 0.0240 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5MXB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200001386. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918410 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33163 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 37.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.069 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.69500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2QIM REMARK 200 REMARK 200 REMARK: PRISM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM CITRATE PH 6.3, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.74000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.37000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.55500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 11.18500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.92500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O UNL A 208 O UNL A 211 1.39 REMARK 500 O UNL A 206 O UNL A 208 1.52 REMARK 500 O UNL A 210 O UNL A 212 1.73 REMARK 500 O UNL A 213 O UNL A 214 1.74 REMARK 500 O UNL A 217 O UNL A 218 1.74 REMARK 500 O UNL A 212 O UNL A 213 1.78 REMARK 500 O UNL A 201 O UNL A 203 1.79 REMARK 500 O UNL A 202 O UNL A 204 1.82 REMARK 500 O UNL A 204 O UNL A 206 1.84 REMARK 500 O UNL A 211 O UNL A 212 1.85 REMARK 500 O UNL A 215 O UNL A 216 1.97 REMARK 500 O UNL A 214 O UNL A 216 1.97 REMARK 500 O UNL A 216 O UNL A 217 1.99 REMARK 500 OE2 GLU A 35 O HOH A 302 2.02 REMARK 500 O UNL A 211 O UNL A 213 2.06 REMARK 500 O UNL A 211 O UNL A 214 2.08 REMARK 500 OE2 GLU A 59 O HOH A 303 2.13 REMARK 500 O UNL A 214 O UNL A 215 2.14 REMARK 500 O UNL A 210 O UNL A 211 2.17 REMARK 500 O UNL A 203 O UNL A 206 2.17 REMARK 500 O UNL A 201 O UNL A 204 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 23 -68.37 -122.15 REMARK 500 ASP A 92 -118.01 64.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 449 DISTANCE = 6.37 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 221 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 31 O REMARK 620 2 VAL A 34 O 97.7 REMARK 620 3 ILE A 37 O 102.0 87.7 REMARK 620 4 HOH A 305 O 156.1 105.0 86.7 REMARK 620 5 HOH A 330 O 76.2 87.4 174.5 97.0 REMARK 620 6 HOH A 379 O 99.4 162.7 91.8 57.7 93.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ML1 A 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ML1 A 222 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5MXW RELATED DB: PDB REMARK 900 RELATED ID: 5I8F RELATED DB: PDB REMARK 900 RELATED ID: 5C9Y RELATED DB: PDB REMARK 900 RELATED ID: 4RYV RELATED DB: PDB REMARK 900 RELATED ID: 4N3E RELATED DB: PDB REMARK 900 RELATED ID: 4Q0K RELATED DB: PDB REMARK 900 RELATED ID: 4Y31 RELATED DB: PDB REMARK 900 RELATED ID: 4JHI RELATED DB: PDB REMARK 900 RELATED ID: 4JHG RELATED DB: PDB REMARK 900 RELATED ID: 4GY9 RELATED DB: PDB REMARK 900 RELATED ID: 3E85 RELATED DB: PDB REMARK 900 RELATED ID: 2QIM RELATED DB: PDB REMARK 900 RELATED ID: 2FLH RELATED DB: PDB REMARK 900 RELATED ID: 1ICX RELATED DB: PDB REMARK 900 RELATED ID: 1IFV RELATED DB: PDB REMARK 900 RELATED ID: 4PSB RELATED DB: PDB REMARK 900 RELATED ID: 4JHH RELATED DB: PDB REMARK 900 RELATED ID: 3IE5 RELATED DB: PDB REMARK 900 RELATED ID: 1XDF RELATED DB: PDB DBREF 5MXB A 1 155 UNP Q9LLQ2 Q9LLQ2_LUPLU 2 156 SEQRES 1 A 155 GLY VAL PHE THR PHE GLN ASP GLU TYR THR SER THR ILE SEQRES 2 A 155 ALA PRO ALA LYS LEU TYR LYS ALA LEU VAL THR ASP ALA SEQRES 3 A 155 ASP ILE ILE ILE PRO LYS ALA VAL GLU THR ILE GLN SER SEQRES 4 A 155 VAL GLU ILE VAL GLU GLY ASN GLY GLY PRO GLY THR ILE SEQRES 5 A 155 LYS LYS LEU THR PHE ILE GLU GLY GLY GLU SER LYS TYR SEQRES 6 A 155 VAL LEU HIS LYS ILE GLU ALA ILE ASP GLU ALA ASN LEU SEQRES 7 A 155 GLY TYR ASN TYR SER ILE VAL GLY GLY VAL GLY LEU PRO SEQRES 8 A 155 ASP THR ILE GLU LYS ILE SER PHE GLU THR LYS LEU VAL SEQRES 9 A 155 GLU GLY ALA ASN GLY GLY SER ILE GLY LYS VAL THR ILE SEQRES 10 A 155 LYS ILE GLU THR LYS GLY ASP ALA GLN PRO ASN GLU GLU SEQRES 11 A 155 GLU GLY LYS ALA ALA LYS ALA ARG GLY ASP ALA PHE PHE SEQRES 12 A 155 LYS ALA ILE GLU SER TYR LEU SER ALA HIS PRO ASP HET UNL A 201 1 HET UNL A 202 1 HET UNL A 203 1 HET UNL A 204 1 HET UNL A 205 1 HET UNL A 206 1 HET UNL A 207 1 HET UNL A 208 1 HET UNL A 209 1 HET UNL A 210 1 HET UNL A 211 1 HET UNL A 212 1 HET UNL A 213 1 HET UNL A 214 1 HET UNL A 215 1 HET UNL A 216 1 HET UNL A 217 1 HET UNL A 218 1 HET UNL A 219 1 HET ML1 A 220 17 HET NA A 221 1 HET ML1 A 222 17 HETNAM UNL UNKNOWN LIGAND HETNAM ML1 N-[2-(5-METHOXY-1H-INDOL-3-YL)ETHYL]ACETAMIDE HETNAM NA SODIUM ION HETSYN ML1 MELATONIN FORMUL 21 ML1 2(C13 H16 N2 O2) FORMUL 22 NA NA 1+ FORMUL 24 HOH *149(H2 O) HELIX 1 AA1 ALA A 14 VAL A 23 1 10 HELIX 2 AA2 ASP A 25 VAL A 34 1 10 HELIX 3 AA3 GLU A 75 ASN A 77 5 3 HELIX 4 AA4 ALA A 107 GLY A 109 5 3 HELIX 5 AA5 ASN A 128 HIS A 153 1 26 SHEET 1 AA1 7 VAL A 2 SER A 11 0 SHEET 2 AA1 7 SER A 111 THR A 121 -1 O ILE A 117 N PHE A 5 SHEET 3 AA1 7 ILE A 94 GLU A 105 -1 N LYS A 102 O LYS A 114 SHEET 4 AA1 7 GLY A 79 GLY A 87 -1 N TYR A 82 O PHE A 99 SHEET 5 AA1 7 GLU A 62 ASP A 74 -1 N LYS A 69 O SER A 83 SHEET 6 AA1 7 ILE A 52 GLU A 59 -1 N PHE A 57 O LYS A 64 SHEET 7 AA1 7 ILE A 37 GLU A 44 -1 N VAL A 43 O ILE A 52 LINK O PRO A 31 NA NA A 221 1555 1555 2.29 LINK O VAL A 34 NA NA A 221 1555 1555 2.38 LINK O ILE A 37 NA NA A 221 1555 1555 2.29 LINK NA NA A 221 O HOH A 305 1555 1555 2.83 LINK NA NA A 221 O HOH A 330 1555 1555 2.44 LINK NA NA A 221 O HOH A 379 1555 5555 2.33 SITE 1 AC1 9 TYR A 9 TYR A 82 THR A 101 VAL A 115 SITE 2 AC1 9 GLY A 139 PHE A 143 ML1 A 222 HOH A 358 SITE 3 AC1 9 HOH A 391 SITE 1 AC2 6 PRO A 31 VAL A 34 ILE A 37 HOH A 305 SITE 2 AC2 6 HOH A 330 HOH A 379 SITE 1 AC3 12 VAL A 34 THR A 36 LEU A 55 TYR A 82 SITE 2 AC3 12 ARG A 138 ALA A 141 PHE A 142 ML1 A 220 SITE 3 AC3 12 HOH A 309 HOH A 313 HOH A 346 HOH A 348 CRYST1 74.469 74.469 67.110 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013428 0.007753 0.000000 0.00000 SCALE2 0.000000 0.015506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014901 0.00000