HEADER SUGAR BINDING PROTEIN 23-JAN-17 5MXF TITLE PHOTORHABDUS ASYMBIOTICA LECTIN (PHL) IN COMPLEX WITH ALPHA-METHYL TITLE 2 FUCOSIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOTORHABDUS ASYMBIOTICA LECTIN PHL; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTORHABDUS ASYMBIOTICA SUBSP. ASYMBIOTICA SOURCE 3 (STRAIN ATCC 43949 / 3105-77); SOURCE 4 ORGANISM_TAXID: 553480; SOURCE 5 STRAIN: ATCC 43949 / 3105-77; SOURCE 6 GENE: PAU_00698; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: TUNER KEYWDS LECTIN, SEVEN-BLADED BETA-PROPELLER, FUCOSE BINDING SITE, HYDROLASE, KEYWDS 2 SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.JANCARIKOVA,J.HOUSER,G.DEMO,M.WIMMEROVA REVDAT 6 23-OCT-24 5MXF 1 REMARK REVDAT 5 17-JAN-24 5MXF 1 HETSYN REVDAT 4 29-JUL-20 5MXF 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 24-JAN-18 5MXF 1 SOURCE REVDAT 2 23-AUG-17 5MXF 1 JRNL REVDAT 1 09-AUG-17 5MXF 0 JRNL AUTH G.JANCARIKOVA,J.HOUSER,P.DOBES,G.DEMO,P.HYRSL,M.WIMMEROVA JRNL TITL CHARACTERIZATION OF NOVEL BANGLE LECTIN FROM PHOTORHABDUS JRNL TITL 2 ASYMBIOTICA WITH DUAL SUGAR-BINDING SPECIFICITY AND ITS JRNL TITL 3 EFFECT ON HOST IMMUNITY. JRNL REF PLOS PATHOG. V. 13 06564 2017 JRNL REFN ESSN 1553-7374 JRNL PMID 28806750 JRNL DOI 10.1371/JOURNAL.PPAT.1006564 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 32917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1746 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2399 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2672 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 303 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : -0.93000 REMARK 3 B12 (A**2) : 0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.735 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2797 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2501 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3850 ; 1.306 ; 1.886 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5724 ; 0.936 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 352 ; 7.742 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;31.853 ;23.770 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 385 ;10.896 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ; 6.726 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 430 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3221 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 704 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1390 ; 1.124 ; 2.251 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1389 ; 1.123 ; 2.251 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1736 ; 1.700 ; 3.365 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1737 ; 1.700 ; 3.366 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1406 ; 1.302 ; 2.381 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1406 ; 1.301 ; 2.381 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2110 ; 2.022 ; 3.531 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3507 ; 3.843 ;19.563 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3345 ; 3.423 ;19.105 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MXF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003074. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34705 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 44.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5MXE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.7-4.3 M NACL, 100 MM HEPES PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.74367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.48733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.48733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.74367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -234.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 37.74367 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 622 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 2 REMARK 465 PRO A 3 REMARK 465 ILE A 4 REMARK 465 ASN A 5 REMARK 465 THR A 6 REMARK 465 SER A 7 REMARK 465 ASN A 8 REMARK 465 PRO A 9 REMARK 465 ASP A 10 REMARK 465 ASN A 11 REMARK 465 THR A 12 REMARK 465 ALA A 13 REMARK 465 SER A 14 REMARK 465 TYR A 15 REMARK 465 VAL A 16 REMARK 465 LYS A 17 REMARK 465 ASP A 18 REMARK 465 GLU A 19 REMARK 465 VAL A 20 REMARK 465 GLU A 21 REMARK 465 ILE A 22 REMARK 465 THR A 23 REMARK 465 SER A 24 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 75 -149.65 62.75 REMARK 500 ASN A 170 -149.86 60.98 REMARK 500 ASN A 218 -153.68 60.96 REMARK 500 ASN A 244 16.24 59.46 REMARK 500 ASN A 266 -151.00 64.66 REMARK 500 VAL A 301 -56.55 79.62 REMARK 500 ASN A 314 -155.47 62.75 REMARK 500 SER A 351 -138.24 -159.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 37 OD1 REMARK 620 2 THR A 38 O 80.5 REMARK 620 3 HOH A 614 O 89.1 106.6 REMARK 620 4 HOH A 745 O 89.1 163.9 85.5 REMARK 620 5 HOH A 753 O 173.5 93.0 92.5 97.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 38 OG1 REMARK 620 2 ASP A 40 OD1 62.8 REMARK 620 3 HOH A 583 O 111.8 153.4 REMARK 620 4 HOH A 675 O 142.9 89.6 103.7 REMARK 620 5 HOH A 676 O 83.7 117.0 86.7 88.4 REMARK 620 6 HOH A 732 O 90.8 77.1 77.0 107.5 159.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 178 OG1 REMARK 620 2 VAL A 179 O 92.8 REMARK 620 3 HOH A 578 O 157.9 94.7 REMARK 620 4 HOH A 632 O 88.7 90.9 111.9 REMARK 620 5 HOH A 710 O 69.4 97.7 88.9 156.8 REMARK 620 6 HOH A 768 O 89.2 169.7 87.1 79.1 92.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 595 O REMARK 620 2 HOH A 599 O 83.3 REMARK 620 3 HOH A 637 O 95.2 168.8 REMARK 620 4 HOH A 662 O 83.9 86.6 82.2 REMARK 620 5 HOH A 740 O 165.7 100.9 83.3 109.9 REMARK 620 6 HOH A 765 O 76.6 86.4 104.1 159.9 90.0 REMARK 620 N 1 2 3 4 5 DBREF 5MXF A 1 369 UNP C7BLE4 C7BLE4_PHOAA 1 369 SEQRES 1 A 369 MET GLN PRO ILE ASN THR SER ASN PRO ASP ASN THR ALA SEQRES 2 A 369 SER TYR VAL LYS ASP GLU VAL GLU ILE THR SER SER THR SEQRES 3 A 369 ILE ALA LEU SER GLU ILE VAL SER VAL VAL ASN THR SER SEQRES 4 A 369 ASP GLY ARG LEU GLU VAL PHE GLY VAL GLY THR ASP LYS SEQRES 5 A 369 ALA VAL TRP HIS ASN ARG GLN MET ALA PRO HIS THR GLY SEQRES 6 A 369 SER PRO TRP SER GLY TRP SER SER LEU LYS GLY GLN VAL SEQRES 7 A 369 THR SER LYS PRO VAL VAL TYR ILE ASN THR ASP GLY ARG SEQRES 8 A 369 LEU GLU VAL PHE ALA ARG GLY THR ASP ASN ALA LEU TRP SEQRES 9 A 369 HIS ILE TRP GLN THR ALA THR ASN ALA GLY TRP SER ASN SEQRES 10 A 369 TRP GLN SER LEU GLY GLY VAL ILE THR SER ASN PRO ALA SEQRES 11 A 369 ILE TYR ALA ASN THR ASP GLY ARG LEU GLU VAL PHE ALA SEQRES 12 A 369 ARG GLY ALA ASP ASN ALA LEU TRP HIS ILE SER GLN THR SEQRES 13 A 369 THR ALA HIS SER GLY PRO TRP SER SER TRP ALA SER LEU SEQRES 14 A 369 ASN GLY VAL ILE THR SER ASN PRO THR VAL HIS ILE ASN SEQRES 15 A 369 SER ASP GLY ARG LEU GLU VAL PHE ALA ARG GLY THR ASP SEQRES 16 A 369 ASN ALA LEU TRP HIS ILE TRP GLN THR ALA PRO ASP SER SEQRES 17 A 369 ASN LEU TRP SER SER TRP GLU SER LEU ASN GLY ILE ILE SEQRES 18 A 369 THR SER ASP PRO VAL VAL ILE ASP THR ALA ASP GLY ARG SEQRES 19 A 369 LEU GLU VAL PHE ALA ARG GLY ALA ASP ASN ALA LEU TRP SEQRES 20 A 369 HIS ILE TRP GLN THR ILE SER HIS SER GLY PRO TRP SER SEQRES 21 A 369 GLY TRP GLN SER LEU ASN GLY VAL ILE THR SER ALA PRO SEQRES 22 A 369 ALA VAL ALA LYS ASN CYS ASP ASN ARG LEU GLU ALA PHE SEQRES 23 A 369 ALA ARG GLY THR ASP ASN ALA LEU TRP HIS THR TRP GLN SEQRES 24 A 369 THR VAL SER HIS SER GLY PRO TRP SER SER TRP GLN SER SEQRES 25 A 369 LEU ASN GLY VAL ILE THR SER ALA PRO THR ALA VAL ARG SEQRES 26 A 369 ASP ALA ASP GLY ARG LEU GLU VAL PHE ALA ARG GLY THR SEQRES 27 A 369 ASP ASN ALA LEU TRP LEU THR TRP GLN THR ALA SER SER SEQRES 28 A 369 TRP SER PRO TRP ILE SER LEU GLY GLY VAL LEU ILE ASP SEQRES 29 A 369 ALA SER ALA ILE LYS HET MFU A 401 12 HET MFU A 402 12 HET NA A 403 1 HET NA A 404 1 HET NA A 405 1 HET NA A 406 1 HET CL A 407 1 HET CL A 408 1 HET CL A 409 1 HET CL A 410 1 HET CL A 411 1 HET CL A 412 1 HET CL A 413 1 HET CL A 414 1 HETNAM MFU METHYL ALPHA-L-FUCOPYRANOSIDE HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN MFU ALPHA-L-METHYL-FUCOSE; METHYL 6-DEOXY-ALPHA-L- HETSYN 2 MFU GALACTOPYRANOSIDE; METHYL ALPHA-L-FUCOSIDE; METHYL L- HETSYN 3 MFU FUCOSIDE; METHYL FUCOSIDE FORMUL 2 MFU 2(C7 H14 O5) FORMUL 4 NA 4(NA 1+) FORMUL 8 CL 8(CL 1-) FORMUL 16 HOH *303(H2 O) SHEET 1 AA1 4 SER A 34 ASN A 37 0 SHEET 2 AA1 4 LEU A 43 VAL A 48 -1 O PHE A 46 N SER A 34 SHEET 3 AA1 4 VAL A 54 ARG A 58 -1 O ASN A 57 N VAL A 45 SHEET 4 AA1 4 SER A 72 SER A 73 -1 O SER A 72 N HIS A 56 SHEET 1 AA2 4 VAL A 83 ILE A 86 0 SHEET 2 AA2 4 LEU A 92 ARG A 97 -1 O PHE A 95 N VAL A 83 SHEET 3 AA2 4 LEU A 103 TRP A 107 -1 O TRP A 104 N ALA A 96 SHEET 4 AA2 4 GLN A 119 SER A 120 -1 O GLN A 119 N HIS A 105 SHEET 1 AA3 4 ALA A 130 ALA A 133 0 SHEET 2 AA3 4 LEU A 139 ARG A 144 -1 O PHE A 142 N ALA A 130 SHEET 3 AA3 4 LEU A 150 THR A 157 -1 O ILE A 153 N VAL A 141 SHEET 4 AA3 4 SER A 160 TRP A 163 -1 O PRO A 162 N THR A 156 SHEET 1 AA4 4 ALA A 130 ALA A 133 0 SHEET 2 AA4 4 LEU A 139 ARG A 144 -1 O PHE A 142 N ALA A 130 SHEET 3 AA4 4 LEU A 150 THR A 157 -1 O ILE A 153 N VAL A 141 SHEET 4 AA4 4 ALA A 167 SER A 168 -1 O ALA A 167 N HIS A 152 SHEET 1 AA5 4 THR A 178 ILE A 181 0 SHEET 2 AA5 4 LEU A 187 ARG A 192 -1 O PHE A 190 N THR A 178 SHEET 3 AA5 4 LEU A 198 TRP A 202 -1 O TRP A 199 N ALA A 191 SHEET 4 AA5 4 GLU A 215 SER A 216 -1 O GLU A 215 N HIS A 200 SHEET 1 AA6 4 VAL A 226 ASP A 229 0 SHEET 2 AA6 4 LEU A 235 ARG A 240 -1 O PHE A 238 N VAL A 226 SHEET 3 AA6 4 LEU A 246 ILE A 253 -1 O ILE A 249 N VAL A 237 SHEET 4 AA6 4 SER A 256 TRP A 259 -1 O PRO A 258 N THR A 252 SHEET 1 AA7 4 VAL A 226 ASP A 229 0 SHEET 2 AA7 4 LEU A 235 ARG A 240 -1 O PHE A 238 N VAL A 226 SHEET 3 AA7 4 LEU A 246 ILE A 253 -1 O ILE A 249 N VAL A 237 SHEET 4 AA7 4 GLN A 263 SER A 264 -1 O GLN A 263 N HIS A 248 SHEET 1 AA8 4 ALA A 274 LYS A 277 0 SHEET 2 AA8 4 LEU A 283 ARG A 288 -1 O PHE A 286 N ALA A 274 SHEET 3 AA8 4 LEU A 294 TRP A 298 -1 O THR A 297 N ALA A 285 SHEET 4 AA8 4 GLN A 311 SER A 312 -1 O GLN A 311 N HIS A 296 SHEET 1 AA9 4 THR A 322 ARG A 325 0 SHEET 2 AA9 4 LEU A 331 ARG A 336 -1 O GLU A 332 N VAL A 324 SHEET 3 AA9 4 LEU A 342 TRP A 346 -1 O THR A 345 N VAL A 333 SHEET 4 AA9 4 ILE A 356 SER A 357 -1 O ILE A 356 N LEU A 344 SSBOND 1 CYS A 279 CYS A 279 1555 6555 2.27 LINK OD1 ASN A 37 NA NA A 406 1555 1555 2.49 LINK OG1 THR A 38 NA NA A 405 1555 1555 2.71 LINK O THR A 38 NA NA A 406 1555 1555 2.53 LINK OD1 ASP A 40 NA NA A 405 1555 1555 2.55 LINK OG1 THR A 178 NA NA A 403 1555 1555 3.12 LINK O VAL A 179 NA NA A 403 1555 1555 2.37 LINK NA NA A 403 O HOH A 578 1555 1555 2.49 LINK NA NA A 403 O HOH A 632 1555 1555 2.36 LINK NA NA A 403 O HOH A 710 1555 1555 2.25 LINK NA NA A 403 O HOH A 768 1555 1555 2.42 LINK NA NA A 404 O HOH A 595 1555 1555 2.84 LINK NA NA A 404 O HOH A 599 1555 1555 2.36 LINK NA NA A 404 O HOH A 637 1555 1555 2.29 LINK NA NA A 404 O HOH A 662 1555 1555 2.62 LINK NA NA A 404 O HOH A 740 1555 1555 2.39 LINK NA NA A 404 O HOH A 765 1555 1555 2.36 LINK NA NA A 405 O HOH A 583 1555 1555 2.51 LINK NA NA A 405 O HOH A 675 1555 1555 2.23 LINK NA NA A 405 O HOH A 676 1555 1555 2.56 LINK NA NA A 405 O HOH A 732 1555 1555 2.63 LINK NA NA A 406 O HOH A 614 1555 6555 2.40 LINK NA NA A 406 O HOH A 745 1555 1555 2.32 LINK NA NA A 406 O HOH A 753 1555 1555 2.34 CISPEP 1 GLY A 161 PRO A 162 0 4.58 CISPEP 2 GLY A 257 PRO A 258 0 -4.70 CRYST1 81.249 81.249 113.231 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012308 0.007106 0.000000 0.00000 SCALE2 0.000000 0.014212 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008832 0.00000