HEADER ELECTRON TRANSPORT 25-JAN-17 5MXY TITLE KUSTC0563 C-TYPE CYTOCHROME COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C-552 KS_3358; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SIMILAR TO CYTOCHROME C6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDATUS KUENENIA STUTTGARTIENSIS; SOURCE 3 ORGANISM_TAXID: 174633; SOURCE 4 GENE: KUSTC0563; SOURCE 5 EXPRESSION_SYSTEM: SHEWANELLA ONEIDENSIS MR-1; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 211586 KEYWDS CYTOCHROME, ANAMMOX, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR A.MOHD,T.BARENDS REVDAT 2 13-OCT-21 5MXY 1 JRNL LINK REVDAT 1 14-FEB-18 5MXY 0 JRNL AUTH M.AKRAM,J.BOCK,A.DIETL,T.R.M.BARENDS JRNL TITL SPECIFICITY OF SMALL C -TYPE CYTOCHROMES IN ANAEROBIC JRNL TITL 2 AMMONIUM OXIDATION. JRNL REF ACS OMEGA V. 6 21457 2021 JRNL REFN ESSN 2470-1343 JRNL PMID 34471748 JRNL DOI 10.1021/ACSOMEGA.1C02275 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 9040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 489 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 657 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 643 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.66000 REMARK 3 B22 (A**2) : 16.66000 REMARK 3 B33 (A**2) : -33.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.030 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.028 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.520 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 715 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 968 ; 2.289 ; 2.070 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 82 ; 4.691 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 29 ;32.342 ;25.517 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 122 ;15.166 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;14.622 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 95 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 542 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 332 ; 1.832 ; 4.687 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 412 ; 2.932 ; 7.001 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 383 ; 2.273 ; 4.818 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1141 ; 6.379 ;64.563 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5MXY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003203. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9541 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M ZN-ACETATE, 0.1 M MES PH 6.0, REMARK 280 10% W/V PEG 8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.96500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 23.91000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 23.91000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.94750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 23.91000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 23.91000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.98250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 23.91000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 23.91000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 74.94750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 23.91000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 23.91000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.98250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.96500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -256.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 31 REMARK 465 ASN A 32 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 73 CD CE NZ REMARK 470 LYS A 115 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 90 -54.66 -125.07 REMARK 500 LYS A 114 132.82 -36.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 207 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 42 ND1 REMARK 620 2 HOH A 351 O 87.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 208 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 42 NE2 REMARK 620 2 HOH A 348 O 83.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 47 NE2 REMARK 620 2 HEC A 200 NA 88.6 REMARK 620 3 HEC A 200 NB 89.7 90.5 REMARK 620 4 HEC A 200 NC 90.1 178.8 89.6 REMARK 620 5 HEC A 200 ND 89.3 89.2 179.0 90.7 REMARK 620 6 MET A 91 SD 176.1 88.3 92.8 93.0 88.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 210 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 55 OD1 REMARK 620 2 HOH A 301 O 71.5 REMARK 620 3 HOH A 309 O 63.6 8.8 REMARK 620 4 HOH A 315 O 71.4 6.4 8.1 REMARK 620 5 HOH A 344 O 64.8 7.0 5.6 10.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 205 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 58 OE2 REMARK 620 2 GLU A 81 OE1 74.3 REMARK 620 3 GLU A 85 OE1 67.0 7.5 REMARK 620 4 HOH A 357 O 70.4 5.4 6.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 67 OD1 REMARK 620 2 GLU A 96 OE2 26.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 76 OD2 REMARK 620 2 ASP A 76 OD2 0.0 REMARK 620 3 ACT A 212 O 103.4 103.4 REMARK 620 4 ACT A 212 O 128.7 128.7 85.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 77 OE1 REMARK 620 2 GLU A 89 OE2 59.1 REMARK 620 3 HOH A 309 O 55.2 6.5 REMARK 620 4 HOH A 311 O 56.5 6.8 1.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 206 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 81 OE2 REMARK 620 2 HOH A 342 O 93.8 REMARK 620 3 HOH A 346 O 87.6 160.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 101 OE1 REMARK 620 2 GLU A 101 OE2 54.3 REMARK 620 3 HEC A 200 O1D 91.2 39.7 REMARK 620 4 HOH A 302 O 93.5 44.0 6.0 REMARK 620 5 HOH A 326 O 87.6 38.7 6.6 5.9 REMARK 620 6 HOH A 333 O 92.4 44.6 9.1 3.7 6.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 212 DBREF 5MXY A 31 115 UNP Q30JB5 Q30JB5_9BACT 31 115 SEQRES 1 A 85 SER ASN ILE ASP GLY MET LYS LEU TYR LEU GLN HIS CYS SEQRES 2 A 85 LYS THR CYS HIS GLY VAL ASP GLY ASN PRO THR ASP LEU SEQRES 3 A 85 GLY GLU GLY LEU GLY ALA ARG LYS PHE ALA ASP ALA GLU SEQRES 4 A 85 TRP GLN ALA LYS THR SER ASP GLU ARG ILE ILE GLU GLN SEQRES 5 A 85 ILE ASN GLU GLY THR PRO GLU MET MET MET PRO PHE LYS SEQRES 6 A 85 GLU LYS LEU THR PRO GLU GLU VAL LYS ALA LEU VAL PRO SEQRES 7 A 85 VAL VAL ARG GLY PHE LYS LYS HET HEC A 200 43 HET ZN A 201 1 HET ZN A 202 1 HET ZN A 203 1 HET ZN A 204 1 HET ZN A 205 1 HET ZN A 206 1 HET ZN A 207 1 HET ZN A 208 1 HET ZN A 209 1 HET ZN A 210 1 HET EDO A 211 4 HET ACT A 212 4 HETNAM HEC HEME C HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 HEC C34 H34 FE N4 O4 FORMUL 3 ZN 10(ZN 2+) FORMUL 13 EDO C2 H6 O2 FORMUL 14 ACT C2 H3 O2 1- FORMUL 15 HOH *69(H2 O) HELIX 1 AA1 ASP A 34 CYS A 43 1 10 HELIX 2 AA2 CYS A 43 GLY A 48 1 6 HELIX 3 AA3 THR A 54 GLY A 61 1 8 HELIX 4 AA4 ASP A 67 THR A 74 1 8 HELIX 5 AA5 SER A 75 GLY A 86 1 12 HELIX 6 AA6 THR A 99 GLY A 112 1 14 LINK SG CYS A 43 CAB HEC A 200 1555 1555 1.79 LINK SG CYS A 46 CAC HEC A 200 1555 1555 1.82 LINK ND1 HIS A 42 ZN ZN A 207 1555 1555 2.33 LINK NE2 HIS A 42 ZN ZN A 208 1555 1555 2.36 LINK NE2 HIS A 47 FE HEC A 200 1555 1555 2.08 LINK OD1 ASP A 55 ZN ZN A 210 1555 7555 2.45 LINK OE2 GLU A 58 ZN ZN A 205 1555 5444 2.56 LINK OD1 ASP A 67 ZN ZN A 202 1555 1555 2.67 LINK OD2 ASP A 76 ZN ZN A 204 1555 1555 2.06 LINK OD2 ASP A 76 ZN ZN A 204 1555 8554 1.92 LINK OE1 GLU A 77 ZN ZN A 203 1555 3454 2.06 LINK OE1 GLU A 81 ZN ZN A 205 1555 1555 2.20 LINK OE2 GLU A 81 ZN ZN A 206 1555 1555 2.33 LINK OE1 GLU A 85 ZN ZN A 205 1555 1555 2.14 LINK OE2 GLU A 89 ZN ZN A 203 1555 1555 2.21 LINK SD MET A 91 FE HEC A 200 1555 1555 2.15 LINK OE2 GLU A 96 ZN ZN A 202 1555 5454 2.05 LINK OE1 GLU A 101 ZN ZN A 201 1555 5454 2.09 LINK OE2 GLU A 101 ZN ZN A 201 1555 5454 2.61 LINK O1D HEC A 200 ZN ZN A 201 1555 1555 2.15 LINK ZN ZN A 201 O HOH A 302 1555 1555 2.16 LINK ZN ZN A 201 O HOH A 326 1555 1555 2.06 LINK ZN ZN A 201 O HOH A 333 1555 5444 2.01 LINK ZN ZN A 203 O HOH A 309 1555 7555 2.37 LINK ZN ZN A 203 O HOH A 311 1555 7555 2.36 LINK ZN ZN A 204 O ACT A 212 1555 1555 2.25 LINK ZN ZN A 204 O ACT A 212 1555 8554 1.84 LINK ZN ZN A 205 O HOH A 357 1555 5454 2.18 LINK ZN ZN A 206 O HOH A 342 1555 1555 2.07 LINK ZN ZN A 206 O HOH A 346 1555 1555 2.05 LINK ZN ZN A 207 O HOH A 351 1555 1555 2.36 LINK ZN ZN A 208 O HOH A 348 1555 1555 2.31 LINK ZN ZN A 210 O HOH A 301 1555 4445 2.03 LINK ZN ZN A 210 O HOH A 309 1555 7555 2.64 LINK ZN ZN A 210 O HOH A 315 1555 7555 2.51 LINK ZN ZN A 210 O HOH A 344 1555 1555 2.16 SITE 1 AC1 24 HIS A 42 CYS A 43 CYS A 46 HIS A 47 SITE 2 AC1 24 LEU A 60 GLY A 61 ALA A 62 PHE A 65 SITE 3 AC1 24 TRP A 70 ARG A 78 GLN A 82 ILE A 83 SITE 4 AC1 24 THR A 87 MET A 90 MET A 91 MET A 92 SITE 5 AC1 24 PHE A 94 PRO A 100 GLU A 101 ZN A 201 SITE 6 AC1 24 HOH A 317 HOH A 318 HOH A 323 HOH A 326 SITE 1 AC2 5 GLU A 101 HEC A 200 HOH A 302 HOH A 326 SITE 2 AC2 5 HOH A 333 SITE 1 AC3 2 ASP A 67 GLU A 96 SITE 1 AC4 7 ASP A 55 GLU A 77 GLU A 89 ZN A 210 SITE 2 AC4 7 HOH A 301 HOH A 309 HOH A 311 SITE 1 AC5 2 ASP A 76 ACT A 212 SITE 1 AC6 4 GLU A 58 GLU A 81 GLU A 85 HOH A 357 SITE 1 AC7 5 GLU A 81 HOH A 339 HOH A 342 HOH A 346 SITE 2 AC7 5 HOH A 347 SITE 1 AC8 2 HIS A 42 HOH A 351 SITE 1 AC9 3 GLN A 41 HIS A 42 HOH A 348 SITE 1 AD1 3 ARG A 78 GLN A 82 GLY A 86 SITE 1 AD2 8 ASP A 55 GLU A 89 ZN A 203 HOH A 301 SITE 2 AD2 8 HOH A 309 HOH A 315 HOH A 343 HOH A 344 SITE 1 AD3 5 GLN A 71 ALA A 72 THR A 74 SER A 75 SITE 2 AD3 5 ACT A 212 SITE 1 AD4 5 ASP A 76 ARG A 111 ZN A 204 EDO A 211 SITE 2 AD4 5 HOH A 325 CRYST1 47.820 47.820 99.930 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020912 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020912 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010007 0.00000