HEADER TRANSFERASE 25-JAN-17 5MY8 TITLE CRYSTAL STRUCTURE OF SRPK1 IN COMPLEX WITH SPHINX31 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SRSF PROTEIN KINASE 1,SRSF PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SFRS PROTEIN KINASE 1,SERINE/ARGININE-RICH PROTEIN-SPECIFIC COMPND 5 KINASE 1,SR-PROTEIN-SPECIFIC KINASE 1,SFRS PROTEIN KINASE 1, COMPND 6 SERINE/ARGININE-RICH PROTEIN-SPECIFIC KINASE 1,SR-PROTEIN-SPECIFIC COMPND 7 KINASE 1; COMPND 8 EC: 2.7.11.1,2.7.11.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SRPK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS TRANSFERASE, SPLICING KINASE, INHIBITOR, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,F.VON DELFT,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,S.KNAPP, AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 1 10-MAY-17 5MY8 0 JRNL AUTH J.BATSON,H.D.TOOP,C.REDONDO,R.BABAEI-JADIDI,A.CHAIKUAD, JRNL AUTH 2 S.F.WEARMOUTH,B.GIBBONS,C.ALLEN,C.TALLANT,J.ZHANG,C.DU, JRNL AUTH 3 J.C.HANCOX,T.HAWTREY,J.DA ROCHA,R.GRIFFITH,S.KNAPP, JRNL AUTH 4 D.O.BATES,J.C.MORRIS JRNL TITL DEVELOPMENT OF POTENT, SELECTIVE SRPK1 INHIBITORS AS JRNL TITL 2 POTENTIAL TOPICAL THERAPEUTICS FOR NEOVASCULAR EYE DISEASE. JRNL REF ACS CHEM. BIOL. V. 12 825 2017 JRNL REFN ESSN 1554-8937 JRNL PMID 28135068 JRNL DOI 10.1021/ACSCHEMBIO.6B01048 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 54679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2893 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3892 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 218 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2874 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 140 REMARK 3 SOLVENT ATOMS : 396 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.12000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.621 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3181 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3112 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4287 ; 1.648 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7168 ; 0.935 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 381 ; 5.893 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;34.918 ;24.113 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 555 ;13.355 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;24.384 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 465 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3604 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 722 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1459 ; 1.551 ; 2.032 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1460 ; 1.551 ; 2.032 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1829 ; 2.457 ; 3.032 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1829 ; 2.458 ; 3.032 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1722 ; 2.315 ; 2.486 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1723 ; 2.314 ; 2.487 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2447 ; 3.680 ; 3.507 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3934 ; 8.183 ;19.179 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3932 ; 8.186 ;19.170 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 655 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6780 46.5970 19.8650 REMARK 3 T TENSOR REMARK 3 T11: 0.0940 T22: 0.0629 REMARK 3 T33: 0.0140 T12: -0.0679 REMARK 3 T13: 0.0139 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.2655 L22: 0.6193 REMARK 3 L33: 0.8355 L12: -0.2062 REMARK 3 L13: -0.1204 L23: 0.2749 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: 0.0332 S13: 0.0007 REMARK 3 S21: 0.0219 S22: -0.0974 S23: 0.0038 REMARK 3 S31: -0.0650 S32: 0.0365 S33: 0.0792 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003235. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57614 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 28.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.79900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% BROAD-MOLECULAR-WEIGHT PEG SMEARS REMARK 280 (BMW PEG SMEARS) AND 0.1 M CITRATE, PH 5.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 206.75267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 103.37633 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 155.06450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.68817 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 258.44083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 206.75267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 103.37633 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 51.68817 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 155.06450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 258.44083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C3 CIT A 701 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1188 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 56 REMARK 465 MET A 57 REMARK 465 ASP A 58 REMARK 465 PRO A 59 REMARK 465 ASN A 60 REMARK 465 ASP A 61 REMARK 465 TYR A 62 REMARK 465 CYS A 63 REMARK 465 SER A 458 REMARK 465 GLY A 459 REMARK 465 ALA A 460 REMARK 465 PRO A 461 REMARK 465 PRO A 462 REMARK 465 PRO A 463 REMARK 465 SER A 464 REMARK 465 GLY A 465 REMARK 465 SER A 466 REMARK 465 ALA A 467 REMARK 465 VAL A 468 REMARK 465 SER A 469 REMARK 465 THR A 470 REMARK 465 ALA A 471 REMARK 465 PRO A 472 REMARK 465 ALA A 473 REMARK 465 THR A 474 REMARK 465 ALA A 475 REMARK 465 GLY A 476 REMARK 465 ASN A 477 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 GLN A 239 CG CD OE1 NE2 REMARK 470 ARG A 240 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 622 CD GLU A 622 OE1 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 141 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 141 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 649 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 79 -40.65 -154.30 REMARK 500 ASP A 135 87.46 -151.15 REMARK 500 LEU A 168 -97.75 -123.28 REMARK 500 THR A 212 -9.50 74.15 REMARK 500 ASP A 213 50.62 -145.37 REMARK 500 ASP A 497 98.46 44.68 REMARK 500 GLN A 513 140.15 79.84 REMARK 500 ASN A 529 -159.12 -155.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 713 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 714 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 715 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 716 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 718 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 719 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 720 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 721 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 722 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 723 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RXZ A 724 DBREF 5MY8 A 58 472 UNP Q96SB4 SRPK1_HUMAN 58 255 DBREF 5MY8 A 474 655 UNP Q96SB4 SRPK1_HUMAN 474 655 SEQADV 5MY8 SER A 56 UNP Q96SB4 EXPRESSION TAG SEQADV 5MY8 MET A 57 UNP Q96SB4 EXPRESSION TAG SEQADV 5MY8 ALA A 473 UNP Q96SB4 LINKER SEQRES 1 A 383 SER MET ASP PRO ASN ASP TYR CYS LYS GLY GLY TYR HIS SEQRES 2 A 383 LEU VAL LYS ILE GLY ASP LEU PHE ASN GLY ARG TYR HIS SEQRES 3 A 383 VAL ILE ARG LYS LEU GLY TRP GLY HIS PHE SER THR VAL SEQRES 4 A 383 TRP LEU SER TRP ASP ILE GLN GLY LYS LYS PHE VAL ALA SEQRES 5 A 383 MET LYS VAL VAL LYS SER ALA GLU HIS TYR THR GLU THR SEQRES 6 A 383 ALA LEU ASP GLU ILE ARG LEU LEU LYS SER VAL ARG ASN SEQRES 7 A 383 SER ASP PRO ASN ASP PRO ASN ARG GLU MET VAL VAL GLN SEQRES 8 A 383 LEU LEU ASP ASP PHE LYS ILE SER GLY VAL ASN GLY THR SEQRES 9 A 383 HIS ILE CYS MET VAL PHE GLU VAL LEU GLY HIS HIS LEU SEQRES 10 A 383 LEU LYS TRP ILE ILE LYS SER ASN TYR GLN GLY LEU PRO SEQRES 11 A 383 LEU PRO CYS VAL LYS LYS ILE ILE GLN GLN VAL LEU GLN SEQRES 12 A 383 GLY LEU ASP TYR LEU HIS THR LYS CYS ARG ILE ILE HIS SEQRES 13 A 383 THR ASP ILE LYS PRO GLU ASN ILE LEU LEU SER VAL ASN SEQRES 14 A 383 GLU GLN TYR ILE ARG ARG LEU ALA ALA GLU ALA THR GLU SEQRES 15 A 383 TRP GLN ARG SER GLY ALA PRO PRO PRO SER GLY SER ALA SEQRES 16 A 383 VAL SER THR ALA PRO ALA THR ALA GLY ASN PHE LEU VAL SEQRES 17 A 383 ASN PRO LEU GLU PRO LYS ASN ALA GLU LYS LEU LYS VAL SEQRES 18 A 383 LYS ILE ALA ASP LEU GLY ASN ALA CYS TRP VAL HIS LYS SEQRES 19 A 383 HIS PHE THR GLU ASP ILE GLN THR ARG GLN TYR ARG SER SEQRES 20 A 383 LEU GLU VAL LEU ILE GLY SER GLY TYR ASN THR PRO ALA SEQRES 21 A 383 ASP ILE TRP SER THR ALA CYS MET ALA PHE GLU LEU ALA SEQRES 22 A 383 THR GLY ASP TYR LEU PHE GLU PRO HIS SER GLY GLU GLU SEQRES 23 A 383 TYR THR ARG ASP GLU ASP HIS ILE ALA LEU ILE ILE GLU SEQRES 24 A 383 LEU LEU GLY LYS VAL PRO ARG LYS LEU ILE VAL ALA GLY SEQRES 25 A 383 LYS TYR SER LYS GLU PHE PHE THR LYS LYS GLY ASP LEU SEQRES 26 A 383 LYS HIS ILE THR LYS LEU LYS PRO TRP GLY LEU PHE GLU SEQRES 27 A 383 VAL LEU VAL GLU LYS TYR GLU TRP SER GLN GLU GLU ALA SEQRES 28 A 383 ALA GLY PHE THR ASP PHE LEU LEU PRO MET LEU GLU LEU SEQRES 29 A 383 ILE PRO GLU LYS ARG ALA THR ALA ALA GLU CYS LEU ARG SEQRES 30 A 383 HIS PRO TRP LEU ASN SER HET CIT A 701 13 HET GOL A 702 6 HET DMS A 703 4 HET EDO A 704 4 HET EDO A 705 4 HET EDO A 706 4 HET EDO A 707 4 HET EDO A 708 8 HET EDO A 709 4 HET EDO A 710 4 HET EDO A 711 4 HET EDO A 712 4 HET EDO A 713 4 HET EDO A 714 4 HET EDO A 715 4 HET EDO A 716 4 HET EDO A 717 4 HET EDO A 718 4 HET EDO A 719 4 HET EDO A 720 4 HET EDO A 721 4 HET EDO A 722 4 HET EDO A 723 4 HET RXZ A 724 37 HETNAM CIT CITRIC ACID HETNAM GOL GLYCEROL HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM RXZ SPHINX31 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CIT C6 H8 O7 FORMUL 3 GOL C3 H8 O3 FORMUL 4 DMS C2 H6 O S FORMUL 5 EDO 20(C2 H6 O2) FORMUL 25 RXZ C27 H24 F3 N5 O2 FORMUL 26 HOH *396(H2 O) HELIX 1 AA1 ALA A 114 SER A 134 1 21 HELIX 2 AA2 ASP A 138 VAL A 144 5 7 HELIX 3 AA3 HIS A 171 SER A 179 1 9 HELIX 4 AA4 PRO A 185 LYS A 206 1 22 HELIX 5 AA5 LYS A 215 GLU A 217 5 3 HELIX 6 AA6 ASN A 224 GLN A 239 1 16 HELIX 7 AA7 GLU A 484 LEU A 491 5 8 HELIX 8 AA8 THR A 514 ARG A 518 5 5 HELIX 9 AA9 SER A 519 GLY A 525 1 7 HELIX 10 AB1 THR A 530 GLY A 547 1 18 HELIX 11 AB2 THR A 560 GLY A 574 1 15 HELIX 12 AB3 PRO A 577 GLY A 584 1 8 HELIX 13 AB4 TYR A 586 PHE A 590 5 5 HELIX 14 AB5 GLY A 607 LYS A 615 1 9 HELIX 15 AB6 SER A 619 LEU A 631 1 13 HELIX 16 AB7 PRO A 632 GLU A 635 5 4 HELIX 17 AB8 ILE A 637 ARG A 641 5 5 HELIX 18 AB9 THR A 643 ARG A 649 1 7 HELIX 19 AC1 HIS A 650 SER A 655 5 6 SHEET 1 AA1 6 LEU A 75 PHE A 76 0 SHEET 2 AA1 6 TYR A 80 TRP A 88 -1 O TYR A 80 N PHE A 76 SHEET 3 AA1 6 SER A 92 ASP A 99 -1 O LEU A 96 N ARG A 84 SHEET 4 AA1 6 LYS A 104 VAL A 111 -1 O LYS A 104 N ASP A 99 SHEET 5 AA1 6 THR A 159 GLU A 166 -1 O MET A 163 N LYS A 109 SHEET 6 AA1 6 LEU A 147 SER A 154 -1 N LEU A 148 O VAL A 164 SHEET 1 AA2 2 ILE A 209 ILE A 210 0 SHEET 2 AA2 2 CYS A 502 TRP A 503 -1 O CYS A 502 N ILE A 210 SHEET 1 AA3 2 ILE A 219 LEU A 221 0 SHEET 2 AA3 2 VAL A 493 ILE A 495 -1 O LYS A 494 N LEU A 220 SITE 1 AC1 6 ARG A 515 ARG A 518 ARG A 561 GOL A 702 SITE 2 AC1 6 HOH A 801 HOH A 829 SITE 1 AC2 10 ASP A 213 ASN A 500 ASP A 511 GLN A 513 SITE 2 AC2 10 ARG A 518 ARG A 561 CIT A 701 HOH A 801 SITE 3 AC2 10 HOH A 813 HOH A1071 SITE 1 AC3 6 TYR A 549 TRP A 606 LYS A 615 TYR A 616 SITE 2 AC3 6 EDO A 714 HOH A 987 SITE 1 AC4 2 GLY A 87 TRP A 88 SITE 1 AC5 5 LEU A 648 HIS A 650 PRO A 651 ASN A 654 SITE 2 AC5 5 HOH A 806 SITE 1 AC6 2 THR A 205 HOH A 811 SITE 1 AC7 8 ASP A 138 ASN A 140 ASP A 201 TYR A 202 SITE 2 AC7 8 THR A 205 LYS A 206 HOH A 847 HOH A 874 SITE 1 AC8 4 ASN A 529 PRO A 531 GLU A 639 HOH A 833 SITE 1 AC9 2 VAL A 582 ALA A 583 SITE 1 AD1 3 TYR A 586 HOH A 842 HOH A 995 SITE 1 AD2 4 TRP A 618 GLU A 622 HOH A 868 HOH A1031 SITE 1 AD3 6 ASN A 140 GLN A 198 HOH A 815 HOH A 819 SITE 2 AD3 6 HOH A 823 HOH A 911 SITE 1 AD4 3 TRP A 606 LYS A 615 DMS A 703 SITE 1 AD5 3 ASN A 157 LYS A 615 HOH A 910 SITE 1 AD6 4 LEU A 86 HIS A 170 TYR A 227 RXZ A 724 SITE 1 AD7 3 ARG A 208 HIS A 505 HOH A1048 SITE 1 AD8 7 LYS A 640 ALA A 642 GLU A 646 EDO A 722 SITE 2 AD8 7 HOH A 844 HOH A 878 HOH A 959 SITE 1 AD9 4 HIS A 554 TYR A 559 ASP A 564 HOH A 861 SITE 1 AE1 4 GLU A 510 GLU A 557 THR A 560 HOH A 817 SITE 1 AE2 8 ASP A 628 PRO A 632 HIS A 650 EDO A 719 SITE 2 AE2 8 HOH A 878 HOH A 901 HOH A 934 HOH A 994 SITE 1 AE3 5 SER A 130 CYS A 207 TRP A 503 HOH A1007 SITE 2 AE3 5 HOH A1027 SITE 1 AE4 21 LEU A 86 TRP A 88 GLY A 89 SER A 92 SITE 2 AE4 21 VAL A 94 ALA A 107 LYS A 109 PHE A 165 SITE 3 AE4 21 GLU A 166 VAL A 167 LEU A 168 GLY A 169 SITE 4 AE4 21 HIS A 170 LEU A 220 VAL A 223 TYR A 227 SITE 5 AE4 21 ILE A 228 LEU A 231 ALA A 496 EDO A 716 SITE 6 AE4 21 HOH A 971 CRYST1 74.883 74.883 310.129 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013354 0.007710 0.000000 0.00000 SCALE2 0.000000 0.015420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003224 0.00000