HEADER HYDROLASE 26-JAN-17 5MYF TITLE CONVERGENT EVOLUTION INVOLVING DIMERIC AND TRIMERIC DUTPASES IN TITLE 2 SIGNALLING. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUTPASE FROM DI S. AUREUS PHAGE; COMPND 3 CHAIN: D, A; COMPND 4 EC: 3.6.1.23; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS STAPHYLOCOCCUS AUREUS, PATHOGENICITY ISLAND, SAPI, DUTPASES, KEYWDS 2 SIGNALLING, GENE TRANSFER, MOBILE GENETIC ELEMENTS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.DONDERIS,J.BOWRING,E.MAIQUES,J.R.CIGES-TOMAS,C.ALITE,I.MEHMEDOV, AUTHOR 2 M.A.TORMO-MAS,J.R.PENADES,A.MARINA REVDAT 3 17-JAN-24 5MYF 1 REMARK REVDAT 2 20-SEP-17 5MYF 1 JRNL REVDAT 1 06-SEP-17 5MYF 0 JRNL AUTH J.DONDERIS,J.BOWRING,E.MAIQUES,J.R.CIGES-TOMAS,C.ALITE, JRNL AUTH 2 I.MEHMEDOV,M.A.TORMO-MAS,J.R.PENADES,A.MARINA JRNL TITL CONVERGENT EVOLUTION INVOLVING DIMERIC AND TRIMERIC DUTPASES JRNL TITL 2 IN PATHOGENICITY ISLAND MOBILIZATION. JRNL REF PLOS PATHOG. V. 13 06581 2017 JRNL REFN ESSN 1553-7374 JRNL PMID 28892519 JRNL DOI 10.1371/JOURNAL.PPAT.1006581 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 29489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0435 - 4.1137 1.00 2732 174 0.1542 0.1747 REMARK 3 2 4.1137 - 3.2654 1.00 2588 147 0.1618 0.2084 REMARK 3 3 3.2654 - 2.8526 1.00 2618 118 0.1942 0.2630 REMARK 3 4 2.8526 - 2.5918 1.00 2549 124 0.1975 0.2467 REMARK 3 5 2.5918 - 2.4061 1.00 2557 140 0.1903 0.2365 REMARK 3 6 2.4061 - 2.2642 1.00 2521 128 0.1738 0.2143 REMARK 3 7 2.2642 - 2.1508 1.00 2556 123 0.1720 0.2512 REMARK 3 8 2.1508 - 2.0572 1.00 2532 135 0.1769 0.2209 REMARK 3 9 2.0572 - 1.9780 1.00 2500 131 0.1998 0.2529 REMARK 3 10 1.9780 - 1.9097 0.99 2492 142 0.2239 0.2820 REMARK 3 11 1.9097 - 1.8500 0.94 2357 125 0.2631 0.3131 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 2694 REMARK 3 ANGLE : 1.521 3656 REMARK 3 CHIRALITY : 0.074 400 REMARK 3 PLANARITY : 0.009 476 REMARK 3 DIHEDRAL : 14.061 993 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.4959 -27.8266 20.1059 REMARK 3 T TENSOR REMARK 3 T11: 0.3731 T22: 0.2263 REMARK 3 T33: 0.2713 T12: -0.0753 REMARK 3 T13: 0.0127 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 0.3113 L22: 0.1000 REMARK 3 L33: 0.2143 L12: -0.0791 REMARK 3 L13: 0.2346 L23: -0.1308 REMARK 3 S TENSOR REMARK 3 S11: -0.1033 S12: 0.1506 S13: -0.0054 REMARK 3 S21: -0.3663 S22: 0.1568 S23: 0.4112 REMARK 3 S31: 0.3086 S32: -0.3554 S33: 0.0139 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 24 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0637 -16.5413 17.3022 REMARK 3 T TENSOR REMARK 3 T11: 0.2686 T22: 0.1976 REMARK 3 T33: 0.1789 T12: 0.0226 REMARK 3 T13: 0.0124 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.3328 L22: 0.2215 REMARK 3 L33: 0.1495 L12: 0.2977 REMARK 3 L13: -0.2265 L23: -0.2169 REMARK 3 S TENSOR REMARK 3 S11: -0.1050 S12: 0.0799 S13: 0.1166 REMARK 3 S21: -0.2285 S22: -0.0759 S23: 0.0816 REMARK 3 S31: 0.2117 S32: -0.0961 S33: -0.0044 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 48 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1503 2.3872 26.9597 REMARK 3 T TENSOR REMARK 3 T11: 0.2475 T22: 0.3279 REMARK 3 T33: 0.3414 T12: 0.0368 REMARK 3 T13: 0.0117 T23: -0.0473 REMARK 3 L TENSOR REMARK 3 L11: 0.0657 L22: 0.0408 REMARK 3 L33: 0.0627 L12: -0.0194 REMARK 3 L13: 0.0124 L23: -0.0519 REMARK 3 S TENSOR REMARK 3 S11: 0.0183 S12: 0.0168 S13: -0.1143 REMARK 3 S21: -0.1194 S22: -0.0211 S23: 0.4543 REMARK 3 S31: -0.0807 S32: 0.1452 S33: 0.0011 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 61 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0164 -18.8836 19.5172 REMARK 3 T TENSOR REMARK 3 T11: 0.2766 T22: 0.1946 REMARK 3 T33: 0.2192 T12: 0.0071 REMARK 3 T13: 0.0146 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.1524 L22: 0.0990 REMARK 3 L33: 0.0497 L12: 0.1413 REMARK 3 L13: -0.0528 L23: -0.0536 REMARK 3 S TENSOR REMARK 3 S11: -0.0605 S12: 0.0168 S13: 0.0404 REMARK 3 S21: -0.2437 S22: -0.0393 S23: 0.1589 REMARK 3 S31: 0.1764 S32: -0.1380 S33: 0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 83 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0572 -29.7604 32.5576 REMARK 3 T TENSOR REMARK 3 T11: 0.4444 T22: 0.2446 REMARK 3 T33: 0.0579 T12: -0.1043 REMARK 3 T13: 0.1863 T23: 0.0464 REMARK 3 L TENSOR REMARK 3 L11: 1.8333 L22: 0.4712 REMARK 3 L33: 0.1252 L12: -0.8658 REMARK 3 L13: 0.1508 L23: -0.0847 REMARK 3 S TENSOR REMARK 3 S11: 0.4844 S12: -0.2816 S13: -0.9504 REMARK 3 S21: 0.2868 S22: -0.2416 S23: 0.3451 REMARK 3 S31: -0.1116 S32: 0.3511 S33: 0.1804 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 104 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9727 -9.2305 36.5990 REMARK 3 T TENSOR REMARK 3 T11: 0.5980 T22: 0.3908 REMARK 3 T33: 0.1447 T12: -0.4381 REMARK 3 T13: 0.4692 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.0173 L22: 0.1890 REMARK 3 L33: 0.1366 L12: -0.0176 REMARK 3 L13: 0.0464 L23: -0.0882 REMARK 3 S TENSOR REMARK 3 S11: 0.1528 S12: -0.1063 S13: 0.0921 REMARK 3 S21: 0.2097 S22: -0.2342 S23: 0.2042 REMARK 3 S31: 0.0758 S32: -0.2528 S33: -0.1022 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 110 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9761 -16.6788 28.4333 REMARK 3 T TENSOR REMARK 3 T11: 0.3019 T22: 0.3197 REMARK 3 T33: 0.2610 T12: 0.0241 REMARK 3 T13: -0.0158 T23: 0.0500 REMARK 3 L TENSOR REMARK 3 L11: 0.1695 L22: 0.0693 REMARK 3 L33: 0.0548 L12: 0.1263 REMARK 3 L13: -0.0463 L23: -0.0418 REMARK 3 S TENSOR REMARK 3 S11: 0.2339 S12: -0.0937 S13: -0.0112 REMARK 3 S21: 0.2310 S22: -0.3184 S23: -0.4280 REMARK 3 S31: 0.2104 S32: 0.1836 S33: 0.0003 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 127 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3219 -19.8546 29.6816 REMARK 3 T TENSOR REMARK 3 T11: 0.2808 T22: 0.2334 REMARK 3 T33: 0.2078 T12: -0.0025 REMARK 3 T13: 0.0642 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.1208 L22: 0.0522 REMARK 3 L33: 0.0747 L12: 0.0966 REMARK 3 L13: -0.0117 L23: -0.0492 REMARK 3 S TENSOR REMARK 3 S11: 0.0966 S12: -0.1744 S13: 0.0250 REMARK 3 S21: 0.2573 S22: -0.0715 S23: 0.0719 REMARK 3 S31: 0.1604 S32: 0.1041 S33: -0.0002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 144 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.6680 -18.8663 18.0969 REMARK 3 T TENSOR REMARK 3 T11: 0.2367 T22: 0.2933 REMARK 3 T33: 0.4289 T12: -0.0091 REMARK 3 T13: -0.0367 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.0339 L22: 0.0635 REMARK 3 L33: 0.0232 L12: -0.0583 REMARK 3 L13: 0.0303 L23: 0.0065 REMARK 3 S TENSOR REMARK 3 S11: 0.0792 S12: 0.2180 S13: 0.1357 REMARK 3 S21: -0.1196 S22: -0.0316 S23: 0.8053 REMARK 3 S31: 0.2239 S32: -0.2531 S33: 0.0015 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1763 11.3924 18.5016 REMARK 3 T TENSOR REMARK 3 T11: 0.2429 T22: 0.1856 REMARK 3 T33: 0.3610 T12: -0.0509 REMARK 3 T13: 0.0528 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 0.4542 L22: 0.2471 REMARK 3 L33: 0.4786 L12: 0.0499 REMARK 3 L13: 0.3611 L23: -0.1915 REMARK 3 S TENSOR REMARK 3 S11: 0.0662 S12: -0.0707 S13: 0.5088 REMARK 3 S21: -0.1187 S22: 0.1006 S23: -0.2117 REMARK 3 S31: -0.3372 S32: 0.1306 S33: -0.0158 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3266 -4.2351 14.6227 REMARK 3 T TENSOR REMARK 3 T11: 0.1889 T22: 0.2145 REMARK 3 T33: 0.1871 T12: 0.0041 REMARK 3 T13: -0.0160 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 0.3360 L22: 0.2995 REMARK 3 L33: 0.5296 L12: 0.0559 REMARK 3 L13: -0.5191 L23: -0.2694 REMARK 3 S TENSOR REMARK 3 S11: 0.0395 S12: 0.0301 S13: 0.1284 REMARK 3 S21: -0.0345 S22: 0.0852 S23: -0.0667 REMARK 3 S31: 0.2224 S32: 0.0266 S33: 0.0041 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2225 3.9363 19.1897 REMARK 3 T TENSOR REMARK 3 T11: 0.2094 T22: 0.4933 REMARK 3 T33: 0.5029 T12: -0.0104 REMARK 3 T13: 0.0141 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.5057 L22: 0.0659 REMARK 3 L33: 0.0146 L12: -0.1371 REMARK 3 L13: 0.0121 L23: -0.0031 REMARK 3 S TENSOR REMARK 3 S11: 0.1598 S12: -0.1054 S13: 0.1450 REMARK 3 S21: -0.0426 S22: -0.0407 S23: -0.1973 REMARK 3 S31: 0.0420 S32: 0.3822 S33: -0.1463 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3328 -13.2510 13.6991 REMARK 3 T TENSOR REMARK 3 T11: 0.4595 T22: 0.4269 REMARK 3 T33: 0.3686 T12: 0.1989 REMARK 3 T13: 0.0154 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 0.3050 L22: 0.1796 REMARK 3 L33: 0.3807 L12: -0.2408 REMARK 3 L13: 0.1541 L23: -0.1452 REMARK 3 S TENSOR REMARK 3 S11: 0.2797 S12: 0.0930 S13: -0.2221 REMARK 3 S21: -0.4006 S22: 0.1601 S23: 0.0587 REMARK 3 S31: 0.5578 S32: 0.0382 S33: 0.0492 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3814 -3.7831 17.8728 REMARK 3 T TENSOR REMARK 3 T11: 0.2396 T22: 0.2954 REMARK 3 T33: 0.2845 T12: 0.0407 REMARK 3 T13: -0.0164 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.1094 L22: 0.1798 REMARK 3 L33: 0.0385 L12: -0.0237 REMARK 3 L13: -0.0613 L23: -0.1268 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: -0.0063 S13: 0.0769 REMARK 3 S21: 0.1643 S22: -0.0555 S23: -0.2656 REMARK 3 S31: 0.2583 S32: 0.4610 S33: 0.0001 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4616 6.8782 8.3266 REMARK 3 T TENSOR REMARK 3 T11: 0.2462 T22: 0.2367 REMARK 3 T33: 0.2940 T12: -0.0175 REMARK 3 T13: 0.0122 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.0576 L22: 0.0631 REMARK 3 L33: 0.0641 L12: 0.0528 REMARK 3 L13: 0.0690 L23: -0.0055 REMARK 3 S TENSOR REMARK 3 S11: -0.2253 S12: 0.1147 S13: 0.2790 REMARK 3 S21: -0.1217 S22: 0.2130 S23: 0.1269 REMARK 3 S31: -0.2699 S32: 0.0974 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MYF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003247. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0721 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29551 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 49.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.02400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5MYD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 6000, 0.5M LICL2 Y 0.1M TRIS REMARK 280 -HCL PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.97100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.20900 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.97100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 74.20900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 249 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 269 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D -33 REMARK 465 GLY D -32 REMARK 465 SER D -31 REMARK 465 SER D -30 REMARK 465 HIS D -29 REMARK 465 HIS D -28 REMARK 465 HIS D -27 REMARK 465 HIS D -26 REMARK 465 HIS D -25 REMARK 465 HIS D -24 REMARK 465 SER D -23 REMARK 465 SER D -22 REMARK 465 GLY D -21 REMARK 465 LEU D -20 REMARK 465 VAL D -19 REMARK 465 PRO D -18 REMARK 465 ARG D -17 REMARK 465 GLY D -16 REMARK 465 SER D -15 REMARK 465 HIS D -14 REMARK 465 MET D -13 REMARK 465 ALA D -12 REMARK 465 SER D -11 REMARK 465 MET D -10 REMARK 465 THR D -9 REMARK 465 GLY D -8 REMARK 465 GLY D -7 REMARK 465 GLN D -6 REMARK 465 GLN D -5 REMARK 465 MET D -4 REMARK 465 GLY D -3 REMARK 465 ARG D -2 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 GLU D 160 REMARK 465 ARG D 161 REMARK 465 GLN D 162 REMARK 465 ASP D 163 REMARK 465 GLY D 164 REMARK 465 THR D 165 REMARK 465 ALA D 166 REMARK 465 ASP D 167 REMARK 465 ALA D 168 REMARK 465 GLY D 169 REMARK 465 LYS D 170 REMARK 465 GLY D 171 REMARK 465 TYR D 172 REMARK 465 VAL D 173 REMARK 465 MET A -33 REMARK 465 GLY A -32 REMARK 465 SER A -31 REMARK 465 SER A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 SER A -23 REMARK 465 SER A -22 REMARK 465 GLY A -21 REMARK 465 LEU A -20 REMARK 465 VAL A -19 REMARK 465 PRO A -18 REMARK 465 ARG A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ARG A 157 REMARK 465 ASN A 158 REMARK 465 HIS A 159 REMARK 465 GLU A 160 REMARK 465 ARG A 161 REMARK 465 GLN A 162 REMARK 465 ASP A 163 REMARK 465 GLY A 164 REMARK 465 THR A 165 REMARK 465 ALA A 166 REMARK 465 ASP A 167 REMARK 465 ALA A 168 REMARK 465 GLY A 169 REMARK 465 LYS A 170 REMARK 465 GLY A 171 REMARK 465 TYR A 172 REMARK 465 VAL A 173 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN D 15 CD OE1 NE2 REMARK 470 LYS D 18 CE NZ REMARK 470 ARG D 23 NH1 NH2 REMARK 470 LYS D 54 NZ REMARK 470 TYR D 121 CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS D 153 CE NZ REMARK 470 LYS D 156 CD CE NZ REMARK 470 ARG D 157 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 18 CD CE NZ REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS A 56 CD CE NZ REMARK 470 LYS A 59 CE NZ REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 PHE A 101 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 122 CG OD1 OD2 REMARK 470 ASP A 123 CG OD1 OD2 REMARK 470 ASP A 124 CG OD1 OD2 REMARK 470 LYS A 153 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 39 O HOH A 201 2.06 REMARK 500 OD2 ASP D 70 O HOH D 201 2.07 REMARK 500 OE1 GLU D 67 O HOH D 201 2.08 REMARK 500 NE ARG D 108 O HOH D 202 2.09 REMARK 500 OE1 GLU D 39 O HOH D 201 2.10 REMARK 500 OD2 ASP A 70 O HOH A 201 2.11 REMARK 500 OE1 GLU A 67 O HOH A 201 2.13 REMARK 500 OE2 GLU D 42 O HOH D 201 2.18 REMARK 500 NH2 ARG D 108 O HOH D 203 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR D 142 -135.01 -130.24 REMARK 500 TYR A 142 -134.92 -127.54 REMARK 500 REMARK 500 REMARK: NULL DBREF 5MYF D -33 173 PDB 5MYF 5MYF -33 173 DBREF 5MYF A -33 173 PDB 5MYF 5MYF -33 173 SEQRES 1 D 207 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 D 207 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 D 207 GLY GLN GLN MET GLY ARG GLY SER MET THR ASN THR LEU SEQRES 4 D 207 THR THR ASP GLN LEU GLN GLU LEU LEU GLN ILE GLN LYS SEQRES 5 D 207 GLU PHE ASP ASP ARG ILE PRO THR LEU ASN LEU GLY ASP SEQRES 6 D 207 SER LYS ILE ALA TYR VAL VAL GLU PHE PHE GLU TRP PHE SEQRES 7 D 207 ASN THR LEU GLU THR PHE LYS ASN TRP LYS LYS LYS PRO SEQRES 8 D 207 GLY LYS PRO LEU ASP VAL GLN LEU ASP GLU LEU ALA ASP SEQRES 9 D 207 ILE LEU ALA PHE GLY LEU SER ILE ALA ASN GLN GLN GLY SEQRES 10 D 207 PHE GLU GLU TYR ASP ARG ASP LEU PHE PHE GLU SER PHE SEQRES 11 D 207 ASP GLU GLU TYR PHE LEU ASP PHE PRO TYR LEU ARG ASN SEQRES 12 D 207 GLN ASP MET ILE TYR ASP MET MET SER GLU PHE TYR ASP SEQRES 13 D 207 ASP ASP LEU THR SER ILE ARG ARG LEU VAL ILE VAL PHE SEQRES 14 D 207 LYS ILE ALA GLU GLN LEU TYR THR ILE ASP GLN LEU ILE SEQRES 15 D 207 ASP ALA TYR LYS LYS LYS MET LYS ARG ASN HIS GLU ARG SEQRES 16 D 207 GLN ASP GLY THR ALA ASP ALA GLY LYS GLY TYR VAL SEQRES 1 A 207 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 207 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 207 GLY GLN GLN MET GLY ARG GLY SER MET THR ASN THR LEU SEQRES 4 A 207 THR THR ASP GLN LEU GLN GLU LEU LEU GLN ILE GLN LYS SEQRES 5 A 207 GLU PHE ASP ASP ARG ILE PRO THR LEU ASN LEU GLY ASP SEQRES 6 A 207 SER LYS ILE ALA TYR VAL VAL GLU PHE PHE GLU TRP PHE SEQRES 7 A 207 ASN THR LEU GLU THR PHE LYS ASN TRP LYS LYS LYS PRO SEQRES 8 A 207 GLY LYS PRO LEU ASP VAL GLN LEU ASP GLU LEU ALA ASP SEQRES 9 A 207 ILE LEU ALA PHE GLY LEU SER ILE ALA ASN GLN GLN GLY SEQRES 10 A 207 PHE GLU GLU TYR ASP ARG ASP LEU PHE PHE GLU SER PHE SEQRES 11 A 207 ASP GLU GLU TYR PHE LEU ASP PHE PRO TYR LEU ARG ASN SEQRES 12 A 207 GLN ASP MET ILE TYR ASP MET MET SER GLU PHE TYR ASP SEQRES 13 A 207 ASP ASP LEU THR SER ILE ARG ARG LEU VAL ILE VAL PHE SEQRES 14 A 207 LYS ILE ALA GLU GLN LEU TYR THR ILE ASP GLN LEU ILE SEQRES 15 A 207 ASP ALA TYR LYS LYS LYS MET LYS ARG ASN HIS GLU ARG SEQRES 16 A 207 GLN ASP GLY THR ALA ASP ALA GLY LYS GLY TYR VAL FORMUL 3 HOH *181(H2 O) HELIX 1 AA1 THR D 6 ASP D 22 1 17 HELIX 2 AA2 ASN D 28 GLU D 48 1 21 HELIX 3 AA3 PRO D 60 GLY D 83 1 24 HELIX 4 AA4 GLU D 85 GLU D 99 1 15 HELIX 5 AA5 ASP D 103 ASN D 109 1 7 HELIX 6 AA6 ASP D 111 ASP D 122 1 12 HELIX 7 AA7 THR D 126 TYR D 142 1 17 HELIX 8 AA8 THR D 143 HIS D 159 1 17 HELIX 9 AA9 THR A 6 ASP A 22 1 17 HELIX 10 AB1 ASN A 28 GLU A 48 1 21 HELIX 11 AB2 PRO A 60 GLY A 83 1 24 HELIX 12 AB3 GLU A 85 GLU A 99 1 15 HELIX 13 AB4 ASP A 103 ASN A 109 1 7 HELIX 14 AB5 ASP A 111 TYR A 121 1 11 HELIX 15 AB6 THR A 126 TYR A 142 1 17 HELIX 16 AB7 THR A 143 LYS A 156 1 14 CRYST1 43.642 51.942 148.418 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022914 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006738 0.00000