HEADER TRANSFERASE 03-FEB-17 5N0Q TITLE CRYSTAL STRUCTURE OF OPHA-DELTAC6 IN COMPLEX WITH SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OMPHALOTUS OLEARIUS; SOURCE 3 ORGANISM_TAXID: 72120; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.NAISMITH,H.SONG REVDAT 4 20-NOV-24 5N0Q 1 REMARK REVDAT 3 17-JAN-24 5N0Q 1 LINK REVDAT 2 19-SEP-18 5N0Q 1 JRNL REVDAT 1 14-FEB-18 5N0Q 0 JRNL AUTH H.SONG,N.S.VAN DER VELDEN,S.L.SHIRAN,P.BLEIZIFFER,C.ZACH, JRNL AUTH 2 R.SIEBER,A.S.IMANI,F.KRAUSBECK,M.AEBI,M.F.FREEMAN,S.RINIKER, JRNL AUTH 3 M.KUNZLER,J.H.NAISMITH JRNL TITL A MOLECULAR MECHANISM FOR THE ENZYMATIC METHYLATION OF JRNL TITL 2 NITROGEN ATOMS WITHIN PEPTIDE BONDS. JRNL REF SCI ADV V. 4 T2720 2018 JRNL REFN ESSN 2375-2548 JRNL PMID 30151425 JRNL DOI 10.1126/SCIADV.AAT2720 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 33795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 1619 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.3599 - 5.4973 0.97 2805 149 0.1788 0.2276 REMARK 3 2 5.4973 - 4.3638 0.99 2739 134 0.1749 0.2119 REMARK 3 3 4.3638 - 3.8123 0.99 2672 162 0.1892 0.2405 REMARK 3 4 3.8123 - 3.4637 0.99 2664 153 0.2280 0.2714 REMARK 3 5 3.4637 - 3.2155 1.00 2716 111 0.2497 0.2937 REMARK 3 6 3.2155 - 3.0259 0.99 2658 128 0.2634 0.3146 REMARK 3 7 3.0259 - 2.8744 0.99 2697 125 0.2654 0.3054 REMARK 3 8 2.8744 - 2.7492 0.99 2657 135 0.3011 0.3458 REMARK 3 9 2.7492 - 2.6434 0.99 2664 117 0.3165 0.4242 REMARK 3 10 2.6434 - 2.5522 0.99 2672 121 0.3374 0.3403 REMARK 3 11 2.5522 - 2.4724 0.99 2623 147 0.3607 0.4601 REMARK 3 12 2.4724 - 2.4017 0.99 2609 137 0.3849 0.4431 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6021 REMARK 3 ANGLE : 1.273 8193 REMARK 3 CHIRALITY : 0.080 911 REMARK 3 PLANARITY : 0.007 1076 REMARK 3 DIHEDRAL : 12.338 3655 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5644 7.8313 -17.6802 REMARK 3 T TENSOR REMARK 3 T11: 0.4711 T22: 0.4789 REMARK 3 T33: 0.4836 T12: -0.0520 REMARK 3 T13: -0.0970 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 2.9457 L22: 4.3221 REMARK 3 L33: 2.5850 L12: 1.6080 REMARK 3 L13: 0.5561 L23: -0.0757 REMARK 3 S TENSOR REMARK 3 S11: 0.1989 S12: -0.3792 S13: -0.0242 REMARK 3 S21: 0.5073 S22: -0.2624 S23: -0.6201 REMARK 3 S31: 0.1815 S32: 0.1186 S33: 0.0302 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9648 34.2138 -20.6165 REMARK 3 T TENSOR REMARK 3 T11: 0.8253 T22: 0.7078 REMARK 3 T33: 1.4218 T12: 0.1803 REMARK 3 T13: -0.1791 T23: -0.2734 REMARK 3 L TENSOR REMARK 3 L11: 1.9556 L22: 0.8461 REMARK 3 L33: 0.0519 L12: -0.3123 REMARK 3 L13: 0.0750 L23: -0.3108 REMARK 3 S TENSOR REMARK 3 S11: -0.2772 S12: -0.1153 S13: 1.4357 REMARK 3 S21: 0.5415 S22: 0.0008 S23: 0.4784 REMARK 3 S31: -0.1792 S32: -0.1754 S33: 0.1187 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.0939 3.3993 -33.4214 REMARK 3 T TENSOR REMARK 3 T11: 0.6532 T22: 0.6001 REMARK 3 T33: 1.0258 T12: -0.1561 REMARK 3 T13: -0.0328 T23: 0.0618 REMARK 3 L TENSOR REMARK 3 L11: 2.8869 L22: 2.2646 REMARK 3 L33: 3.4700 L12: 0.3555 REMARK 3 L13: 1.2764 L23: 1.3207 REMARK 3 S TENSOR REMARK 3 S11: 0.1244 S12: 0.1370 S13: 0.2108 REMARK 3 S21: -0.3596 S22: -0.0006 S23: 0.9388 REMARK 3 S31: -0.1164 S32: -0.5370 S33: -0.1432 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.5886 1.8358 -22.7744 REMARK 3 T TENSOR REMARK 3 T11: 0.5649 T22: 0.7145 REMARK 3 T33: 1.0346 T12: -0.1610 REMARK 3 T13: -0.0108 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 2.3635 L22: 3.2483 REMARK 3 L33: 2.8604 L12: -0.2276 REMARK 3 L13: 0.1939 L23: -0.7931 REMARK 3 S TENSOR REMARK 3 S11: 0.3554 S12: -0.2672 S13: 0.1910 REMARK 3 S21: -0.0256 S22: -0.0866 S23: 1.4159 REMARK 3 S31: 0.2997 S32: -0.8207 S33: -0.2690 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.0877 10.2080 -14.6597 REMARK 3 T TENSOR REMARK 3 T11: 0.5790 T22: 0.9037 REMARK 3 T33: 1.2349 T12: -0.1002 REMARK 3 T13: 0.2904 T23: -0.1810 REMARK 3 L TENSOR REMARK 3 L11: 2.5348 L22: 0.9761 REMARK 3 L33: 2.8075 L12: -0.0886 REMARK 3 L13: 0.2662 L23: 0.2716 REMARK 3 S TENSOR REMARK 3 S11: 0.1525 S12: -1.0154 S13: 0.7014 REMARK 3 S21: 0.4608 S22: -0.2011 S23: 1.9697 REMARK 3 S31: -0.0869 S32: -0.7963 S33: -0.0211 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 130 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3237 21.8482 -34.0981 REMARK 3 T TENSOR REMARK 3 T11: 0.6350 T22: 0.4765 REMARK 3 T33: 0.7851 T12: -0.0466 REMARK 3 T13: -0.2205 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 2.9822 L22: 4.3265 REMARK 3 L33: 1.5854 L12: 0.9697 REMARK 3 L13: 0.1705 L23: -0.3243 REMARK 3 S TENSOR REMARK 3 S11: -0.2349 S12: 0.1880 S13: 0.8532 REMARK 3 S21: -0.9173 S22: 0.0839 S23: 1.1996 REMARK 3 S31: -0.1627 S32: -0.1920 S33: 0.1710 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 234 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1118 22.1492 -31.4926 REMARK 3 T TENSOR REMARK 3 T11: 0.6693 T22: 0.4886 REMARK 3 T33: 0.6297 T12: -0.1318 REMARK 3 T13: -0.0291 T23: 0.0466 REMARK 3 L TENSOR REMARK 3 L11: 0.8450 L22: 4.0057 REMARK 3 L33: 1.7511 L12: -0.1648 REMARK 3 L13: -1.0318 L23: -0.9555 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: 0.2829 S13: 0.3732 REMARK 3 S21: -0.4475 S22: -0.0831 S23: -0.4877 REMARK 3 S31: -0.1468 S32: 0.5805 S33: 0.1484 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 290 THROUGH 356 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3710 -6.6616 -13.0151 REMARK 3 T TENSOR REMARK 3 T11: 0.6818 T22: 0.6029 REMARK 3 T33: 0.9726 T12: -0.0733 REMARK 3 T13: -0.0923 T23: 0.1893 REMARK 3 L TENSOR REMARK 3 L11: 2.9119 L22: 3.9801 REMARK 3 L33: 2.8899 L12: 0.2205 REMARK 3 L13: 0.1996 L23: -0.5048 REMARK 3 S TENSOR REMARK 3 S11: 0.1066 S12: -0.6616 S13: -0.8236 REMARK 3 S21: 0.3971 S22: -0.2813 S23: -0.8876 REMARK 3 S31: 0.7640 S32: 0.3848 S33: 0.1103 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 357 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7261 -6.8531 -2.8808 REMARK 3 T TENSOR REMARK 3 T11: 1.1826 T22: 0.7473 REMARK 3 T33: 1.1641 T12: -0.1311 REMARK 3 T13: -0.3007 T23: 0.2159 REMARK 3 L TENSOR REMARK 3 L11: 3.0031 L22: 4.7108 REMARK 3 L33: 3.0917 L12: -0.1628 REMARK 3 L13: 0.4974 L23: -0.5853 REMARK 3 S TENSOR REMARK 3 S11: -0.0937 S12: -0.7838 S13: -0.8479 REMARK 3 S21: 0.9070 S22: 0.3475 S23: -0.9660 REMARK 3 S31: 1.0703 S32: -0.1942 S33: -0.4030 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N0Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003282. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9281 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33901 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 61.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 1.00900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5N0O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 % OCTYL BETA-D-GLUCOPYRANOSIDE REMARK 280 (OG), 0.2 M KCL, 0.1 M BIS-TRIS PH 6.5 AND 20% PEG 4000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.22150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.64850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.21200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.64850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.22150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.21200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 GLN A 6 REMARK 465 THR A 7 REMARK 465 LEU A 382 REMARK 465 LEU A 383 REMARK 465 ASP A 384 REMARK 465 ALA A 385 REMARK 465 ALA A 386 REMARK 465 ARG A 387 REMARK 465 GLU A 388 REMARK 465 SER A 389 REMARK 465 GLY A 390 REMARK 465 GLU A 391 REMARK 465 GLU A 392 REMARK 465 ALA A 393 REMARK 465 SER A 394 REMARK 465 GLN A 395 REMARK 465 ASN A 396 REMARK 465 GLY A 397 REMARK 465 PHE A 398 REMARK 465 PRO A 399 REMARK 465 TRP A 400 REMARK 465 VAL A 401 REMARK 465 ILE A 402 REMARK 465 GLY B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 THR B 5 REMARK 465 GLN B 6 REMARK 465 THR B 7 REMARK 465 LEU B 266 REMARK 465 LEU B 267 REMARK 465 PRO B 268 REMARK 465 ALA B 269 REMARK 465 GLY B 270 REMARK 465 GLN B 271 REMARK 465 VAL B 272 REMARK 465 PRO B 273 REMARK 465 ASP B 274 REMARK 465 LYS B 275 REMARK 465 LYS B 276 REMARK 465 LEU B 382 REMARK 465 LEU B 383 REMARK 465 ASP B 384 REMARK 465 ALA B 385 REMARK 465 ALA B 386 REMARK 465 ARG B 387 REMARK 465 GLU B 388 REMARK 465 SER B 389 REMARK 465 GLY B 390 REMARK 465 GLU B 391 REMARK 465 GLU B 392 REMARK 465 ALA B 393 REMARK 465 SER B 394 REMARK 465 GLN B 395 REMARK 465 ASN B 396 REMARK 465 GLY B 397 REMARK 465 PHE B 398 REMARK 465 PRO B 399 REMARK 465 TRP B 400 REMARK 465 VAL B 401 REMARK 465 ILE B 402 REMARK 465 MVA B 403 REMARK 465 MVA B 404 REMARK 465 SAR B 405 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 295 OE2 GLU B 81 2.17 REMARK 500 O VAL A 352 NH1 ARG A 360 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 371 CG1 - CB - CG2 ANGL. DEV. = -18.1 DEGREES REMARK 500 ARG B 372 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 22 -57.39 72.29 REMARK 500 CYS A 175 56.63 -143.98 REMARK 500 ASP A 180 -165.57 -110.74 REMARK 500 ASP A 274 96.13 -66.70 REMARK 500 ALA A 277 103.87 -59.66 REMARK 500 THR A 320 -166.99 -129.46 REMARK 500 ILE B 22 -56.80 73.65 REMARK 500 CYS B 175 53.34 -142.67 REMARK 500 ASP B 180 -159.67 -112.29 REMARK 500 TYR B 295 69.36 -117.15 REMARK 500 ALA B 319 88.15 -152.78 REMARK 500 THR B 320 -168.42 -121.96 REMARK 500 ASP B 354 -1.75 75.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues MVA A 403 and MVA A REMARK 800 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues MVA A 404 and SAR A REMARK 800 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues SAR A 405 and MVA A REMARK 800 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues MVA A 406 and IML A REMARK 800 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues IML A 407 and SAR A REMARK 800 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues MVA B 406 and IML B REMARK 800 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues IML B 407 and SAR B REMARK 800 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide SAR B 408 and VAL B REMARK 800 409 DBREF 5N0Q A 2 411 PDB 5N0Q 5N0Q 2 411 DBREF 5N0Q B 2 411 PDB 5N0Q 5N0Q 2 411 SEQRES 1 A 410 GLY THR SER THR GLN THR LYS ALA GLY SER LEU THR ILE SEQRES 2 A 410 VAL GLY THR GLY ILE GLU SER ILE GLY GLN MET THR LEU SEQRES 3 A 410 GLN ALA LEU SER TYR ILE GLU ALA ALA ALA LYS VAL PHE SEQRES 4 A 410 TYR CYS VAL ILE ASP PRO ALA THR GLU ALA PHE ILE LEU SEQRES 5 A 410 THR LYS ASN LYS ASN CYS VAL ASP LEU TYR GLN TYR TYR SEQRES 6 A 410 ASP ASN GLY LYS SER ARG LEU ASN THR TYR THR GLN MET SEQRES 7 A 410 SER GLU LEU MET VAL ARG GLU VAL ARG LYS GLY LEU ASP SEQRES 8 A 410 VAL VAL GLY VAL PHE TYR GLY HIS PRO GLY VAL PHE VAL SEQRES 9 A 410 ASN PRO SER HIS ARG ALA LEU ALA ILE ALA LYS SER GLU SEQRES 10 A 410 GLY TYR ARG ALA ARG MET LEU PRO GLY VAL SER ALA GLU SEQRES 11 A 410 ASP CYS LEU PHE ALA ASP LEU CYS ILE ASP PRO SER ASN SEQRES 12 A 410 PRO GLY CYS LEU THR TYR GLU ALA SER ASP PHE LEU ILE SEQRES 13 A 410 ARG ASP ARG PRO VAL SER ILE HIS SER HIS LEU VAL LEU SEQRES 14 A 410 PHE GLN VAL GLY CYS VAL GLY ILE ALA ASP PHE ASN PHE SEQRES 15 A 410 THR GLY PHE ASP ASN ASN LYS PHE GLY VAL LEU VAL ASP SEQRES 16 A 410 ARG LEU GLU GLN GLU TYR GLY ALA GLU HIS PRO VAL VAL SEQRES 17 A 410 HIS TYR ILE ALA ALA MET MET PRO HIS GLN ASP PRO VAL SEQRES 18 A 410 THR ASP LYS TYR THR VAL ALA GLN LEU ARG GLU PRO GLU SEQRES 19 A 410 ILE ALA LYS ARG VAL GLY GLY VAL SER THR PHE TYR ILE SEQRES 20 A 410 PRO PRO LYS ALA ARG LYS ALA SER ASN LEU ASP ILE ILE SEQRES 21 A 410 ARG ARG LEU GLU LEU LEU PRO ALA GLY GLN VAL PRO ASP SEQRES 22 A 410 LYS LYS ALA ARG ILE TYR PRO ALA ASN GLN TRP GLU PRO SEQRES 23 A 410 ASP VAL PRO GLU VAL GLU PRO TYR ARG PRO SER ASP GLN SEQRES 24 A 410 ALA ALA ILE ALA GLN LEU ALA ASP HIS ALA PRO PRO GLU SEQRES 25 A 410 GLN TYR GLN PRO LEU ALA THR SER LYS ALA MET SER ASP SEQRES 26 A 410 VAL MET THR LYS LEU ALA LEU ASP PRO LYS ALA LEU ALA SEQRES 27 A 410 ASP TYR LYS ALA ASP HIS ARG ALA PHE ALA GLN SER VAL SEQRES 28 A 410 PRO ASP LEU THR PRO GLN GLU ARG ALA ALA LEU GLU LEU SEQRES 29 A 410 GLY ASP SER TRP ALA ILE ARG CYS ALA MET LYS ASN MET SEQRES 30 A 410 PRO SER SER LEU LEU ASP ALA ALA ARG GLU SER GLY GLU SEQRES 31 A 410 GLU ALA SER GLN ASN GLY PHE PRO TRP VAL ILE MVA MVA SEQRES 32 A 410 SAR MVA IML SAR VAL ILE GLY SEQRES 1 B 410 GLY THR SER THR GLN THR LYS ALA GLY SER LEU THR ILE SEQRES 2 B 410 VAL GLY THR GLY ILE GLU SER ILE GLY GLN MET THR LEU SEQRES 3 B 410 GLN ALA LEU SER TYR ILE GLU ALA ALA ALA LYS VAL PHE SEQRES 4 B 410 TYR CYS VAL ILE ASP PRO ALA THR GLU ALA PHE ILE LEU SEQRES 5 B 410 THR LYS ASN LYS ASN CYS VAL ASP LEU TYR GLN TYR TYR SEQRES 6 B 410 ASP ASN GLY LYS SER ARG LEU ASN THR TYR THR GLN MET SEQRES 7 B 410 SER GLU LEU MET VAL ARG GLU VAL ARG LYS GLY LEU ASP SEQRES 8 B 410 VAL VAL GLY VAL PHE TYR GLY HIS PRO GLY VAL PHE VAL SEQRES 9 B 410 ASN PRO SER HIS ARG ALA LEU ALA ILE ALA LYS SER GLU SEQRES 10 B 410 GLY TYR ARG ALA ARG MET LEU PRO GLY VAL SER ALA GLU SEQRES 11 B 410 ASP CYS LEU PHE ALA ASP LEU CYS ILE ASP PRO SER ASN SEQRES 12 B 410 PRO GLY CYS LEU THR TYR GLU ALA SER ASP PHE LEU ILE SEQRES 13 B 410 ARG ASP ARG PRO VAL SER ILE HIS SER HIS LEU VAL LEU SEQRES 14 B 410 PHE GLN VAL GLY CYS VAL GLY ILE ALA ASP PHE ASN PHE SEQRES 15 B 410 THR GLY PHE ASP ASN ASN LYS PHE GLY VAL LEU VAL ASP SEQRES 16 B 410 ARG LEU GLU GLN GLU TYR GLY ALA GLU HIS PRO VAL VAL SEQRES 17 B 410 HIS TYR ILE ALA ALA MET MET PRO HIS GLN ASP PRO VAL SEQRES 18 B 410 THR ASP LYS TYR THR VAL ALA GLN LEU ARG GLU PRO GLU SEQRES 19 B 410 ILE ALA LYS ARG VAL GLY GLY VAL SER THR PHE TYR ILE SEQRES 20 B 410 PRO PRO LYS ALA ARG LYS ALA SER ASN LEU ASP ILE ILE SEQRES 21 B 410 ARG ARG LEU GLU LEU LEU PRO ALA GLY GLN VAL PRO ASP SEQRES 22 B 410 LYS LYS ALA ARG ILE TYR PRO ALA ASN GLN TRP GLU PRO SEQRES 23 B 410 ASP VAL PRO GLU VAL GLU PRO TYR ARG PRO SER ASP GLN SEQRES 24 B 410 ALA ALA ILE ALA GLN LEU ALA ASP HIS ALA PRO PRO GLU SEQRES 25 B 410 GLN TYR GLN PRO LEU ALA THR SER LYS ALA MET SER ASP SEQRES 26 B 410 VAL MET THR LYS LEU ALA LEU ASP PRO LYS ALA LEU ALA SEQRES 27 B 410 ASP TYR LYS ALA ASP HIS ARG ALA PHE ALA GLN SER VAL SEQRES 28 B 410 PRO ASP LEU THR PRO GLN GLU ARG ALA ALA LEU GLU LEU SEQRES 29 B 410 GLY ASP SER TRP ALA ILE ARG CYS ALA MET LYS ASN MET SEQRES 30 B 410 PRO SER SER LEU LEU ASP ALA ALA ARG GLU SER GLY GLU SEQRES 31 B 410 GLU ALA SER GLN ASN GLY PHE PRO TRP VAL ILE MVA MVA SEQRES 32 B 410 SAR MVA IML SAR VAL ILE GLY HET MVA A 403 8 HET MVA A 404 8 HET SAR A 405 5 HET MVA A 406 8 HET IML A 407 9 HET SAR A 408 5 HET MVA B 406 8 HET IML B 407 9 HET SAR B 408 5 HET SAH A 501 26 HET SAH B 501 26 HETNAM MVA N-METHYLVALINE HETNAM SAR SARCOSINE HETNAM IML N-METHYL-ISOLEUCINE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 1 MVA 4(C6 H13 N O2) FORMUL 1 SAR 3(C3 H7 N O2) FORMUL 1 IML 2(C7 H15 N O2) FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 5 HOH *15(H2 O) HELIX 1 AA1 THR A 26 ALA A 36 1 11 HELIX 2 AA2 ASP A 45 ASN A 56 1 12 HELIX 3 AA3 TYR A 63 TYR A 66 5 4 HELIX 4 AA4 SER A 71 LYS A 89 1 19 HELIX 5 AA5 VAL A 105 GLY A 119 1 15 HELIX 6 AA6 SER A 129 CYS A 139 1 11 HELIX 7 AA7 ALA A 152 ARG A 158 1 7 HELIX 8 AA8 GLN A 172 VAL A 176 5 5 HELIX 9 AA9 LYS A 190 GLY A 203 1 14 HELIX 10 AB1 ALA A 229 ARG A 232 5 4 HELIX 11 AB2 GLU A 233 LYS A 238 1 6 HELIX 12 AB3 ASN A 257 LEU A 264 1 8 HELIX 13 AB4 ARG A 296 HIS A 309 1 14 HELIX 14 AB5 SER A 321 ASP A 334 1 14 HELIX 15 AB6 ASP A 334 ASP A 344 1 11 HELIX 16 AB7 ASP A 344 VAL A 352 1 9 HELIX 17 AB8 THR A 356 GLY A 366 1 11 HELIX 18 AB9 ASP A 367 LYS A 376 1 10 HELIX 19 AC1 THR B 26 ALA B 36 1 11 HELIX 20 AC2 ASP B 45 ASN B 56 1 12 HELIX 21 AC3 TYR B 63 TYR B 66 5 4 HELIX 22 AC4 SER B 71 LYS B 89 1 19 HELIX 23 AC5 ASN B 106 GLU B 118 1 13 HELIX 24 AC6 SER B 129 CYS B 139 1 11 HELIX 25 AC7 ALA B 152 ARG B 158 1 7 HELIX 26 AC8 GLN B 172 VAL B 176 5 5 HELIX 27 AC9 LYS B 190 GLY B 203 1 14 HELIX 28 AD1 ALA B 229 ARG B 232 5 4 HELIX 29 AD2 GLU B 233 LYS B 238 1 6 HELIX 30 AD3 ASN B 257 LEU B 264 1 8 HELIX 31 AD4 ARG B 296 GLN B 305 1 10 HELIX 32 AD5 SER B 321 ASP B 334 1 14 HELIX 33 AD6 ASP B 334 ASP B 344 1 11 HELIX 34 AD7 ASP B 344 VAL B 352 1 9 HELIX 35 AD8 THR B 356 GLY B 366 1 11 HELIX 36 AD9 ASP B 367 LYS B 376 1 10 SHEET 1 AA1 5 CYS A 59 ASP A 61 0 SHEET 2 AA1 5 LYS A 38 CYS A 42 1 N TYR A 41 O VAL A 60 SHEET 3 AA1 5 ASP A 92 PHE A 97 1 O VAL A 96 N PHE A 40 SHEET 4 AA1 5 SER A 11 GLY A 16 1 N SER A 11 O VAL A 93 SHEET 5 AA1 5 ARG A 121 MET A 124 1 O ARG A 123 N LEU A 12 SHEET 1 AA210 VAL A 222 THR A 227 0 SHEET 2 AA210 PRO A 207 ILE A 212 -1 N HIS A 210 O ASP A 224 SHEET 3 AA210 THR A 245 ILE A 248 -1 O THR A 245 N TYR A 211 SHEET 4 AA210 HIS A 167 PHE A 171 -1 N LEU A 168 O ILE A 248 SHEET 5 AA210 CYS A 147 GLU A 151 1 N LEU A 148 O VAL A 169 SHEET 6 AA210 CYS B 147 GLU B 151 -1 O THR B 149 N CYS A 147 SHEET 7 AA210 HIS B 167 PHE B 171 1 O VAL B 169 N LEU B 148 SHEET 8 AA210 THR B 245 ILE B 248 -1 O ILE B 248 N LEU B 168 SHEET 9 AA210 PRO B 207 ILE B 212 -1 N TYR B 211 O THR B 245 SHEET 10 AA210 VAL B 222 THR B 227 -1 O TYR B 226 N VAL B 208 SHEET 1 AA3 5 CYS B 59 ASP B 61 0 SHEET 2 AA3 5 LYS B 38 CYS B 42 1 N VAL B 39 O VAL B 60 SHEET 3 AA3 5 ASP B 92 PHE B 97 1 O VAL B 96 N PHE B 40 SHEET 4 AA3 5 SER B 11 GLY B 16 1 N VAL B 15 O GLY B 95 SHEET 5 AA3 5 ARG B 121 MET B 124 1 O ARG B 123 N ILE B 14 LINK C MVA A 403 N MVA A 404 1555 1555 1.34 LINK C MVA A 404 N SAR A 405 1555 1555 1.34 LINK C SAR A 405 N MVA A 406 1555 1555 1.34 LINK C MVA A 406 N IML A 407 1555 1555 1.33 LINK C IML A 407 N SAR A 408 1555 1555 1.33 LINK C SAR A 408 N VAL A 409 1555 1555 1.34 LINK C MVA B 406 N IML B 407 1555 1555 1.33 LINK C IML B 407 N SAR B 408 1555 1555 1.33 LINK C SAR B 408 N VAL B 409 1555 1555 1.33 CISPEP 1 ASN A 144 PRO A 145 0 14.24 CISPEP 2 TYR A 280 PRO A 281 0 5.05 CISPEP 3 ASN B 144 PRO B 145 0 14.38 CISPEP 4 TYR B 280 PRO B 281 0 -0.47 SITE 1 AC1 18 ILE A 19 TYR A 98 GLY A 99 HIS A 100 SITE 2 AC1 18 VAL A 103 PHE A 104 VAL A 105 SER A 129 SITE 3 AC1 18 ALA A 130 PHE A 171 GLN A 172 ILE A 212 SITE 4 AC1 18 ALA A 213 GLY A 242 VAL A 243 SER A 244 SITE 5 AC1 18 THR A 245 SAR B 408 SITE 1 AC2 16 SAR A 408 TYR B 98 HIS B 100 VAL B 103 SITE 2 AC2 16 PHE B 104 SER B 129 ALA B 130 PHE B 171 SITE 3 AC2 16 GLN B 172 TYR B 211 ILE B 212 ALA B 213 SITE 4 AC2 16 GLY B 242 VAL B 243 SER B 244 THR B 245 SITE 1 AC3 3 GLN A 316 CYS A 373 SAR A 405 SITE 1 AC4 4 GLN A 316 CYS A 373 MVA A 403 MVA A 406 SITE 1 AC5 2 MVA A 404 IML A 407 SITE 1 AC6 6 SAR A 405 SAR A 408 TYR B 63 PHE B 181 SITE 2 AC6 6 ASN B 182 PHE B 183 SITE 1 AC7 10 MVA A 406 VAL A 409 ILE A 410 TYR B 63 SITE 2 AC7 10 TYR B 98 PHE B 181 ASN B 182 PHE B 183 SITE 3 AC7 10 GLY B 242 SAH B 501 SITE 1 AC8 4 TYR A 63 PHE A 181 ARG B 372 SAR B 408 SITE 1 AC9 8 TYR A 63 TYR A 98 PHE A 181 GLY A 242 SITE 2 AC9 8 SAH A 501 MVA B 406 VAL B 409 ILE B 410 SITE 1 AD1 10 TYR A 66 ARG A 72 TYR A 76 TYR A 98 SITE 2 AD1 10 GLN A 172 GLY A 242 SAH A 501 IML B 407 SITE 3 AD1 10 ILE B 410 GLY B 411 CRYST1 72.443 102.424 115.297 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013804 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009763 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008673 0.00000