HEADER CELL CYCLE 07-FEB-17 5N2D TITLE STRUCTURE OF PD-L1/SMALL-MOLECULE INHIBITOR COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGRAMMED CELL DEATH 1 LIGAND 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PROGRAMMED DEATH LIGAND 1,B7 HOMOLOG 1,B7-H1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD274, B7H1, PDCD1L1, PDCD1LG1, PDL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PD-L1, PD-1, SMALL-MOLECULE INHIBITOR, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR K.GUZIK,K.M.ZAK,P.GRUDNIK,G.DUBIN,T.A.HOLAK REVDAT 3 17-JAN-24 5N2D 1 REMARK REVDAT 2 26-JUL-17 5N2D 1 REVDAT 1 28-JUN-17 5N2D 0 JRNL AUTH K.GUZIK,K.M.ZAK,P.GRUDNIK,K.MAGIERA,B.MUSIELAK,R.TORNER, JRNL AUTH 2 L.SKALNIAK,A.DOMLING,G.DUBIN,T.A.HOLAK JRNL TITL SMALL-MOLECULE INHIBITORS OF THE PROGRAMMED CELL JRNL TITL 2 DEATH-1/PROGRAMMED DEATH-LIGAND 1 (PD-1/PD-L1) INTERACTION JRNL TITL 3 VIA TRANSIENTLY INDUCED PROTEIN STATES AND DIMERIZATION OF JRNL TITL 4 PD-L1. JRNL REF J. MED. CHEM. V. 60 5857 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28613862 JRNL DOI 10.1021/ACS.JMEDCHEM.7B00293 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 23740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5235 - 4.6985 0.95 2987 147 0.1806 0.2110 REMARK 3 2 4.6985 - 3.7299 0.96 2833 146 0.1716 0.2279 REMARK 3 3 3.7299 - 3.2586 0.99 2901 158 0.2127 0.2639 REMARK 3 4 3.2586 - 2.9607 0.94 2705 145 0.2408 0.3265 REMARK 3 5 2.9607 - 2.7485 0.98 2847 142 0.2477 0.3179 REMARK 3 6 2.7485 - 2.5865 0.98 2826 144 0.2562 0.3099 REMARK 3 7 2.5865 - 2.4570 0.95 2749 150 0.2531 0.3428 REMARK 3 8 2.4570 - 2.3500 0.95 2743 117 0.2540 0.3265 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4009 REMARK 3 ANGLE : 1.131 5451 REMARK 3 CHIRALITY : 0.058 611 REMARK 3 PLANARITY : 0.007 741 REMARK 3 DIHEDRAL : 20.156 2407 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 32 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9588 13.9179 -34.7591 REMARK 3 T TENSOR REMARK 3 T11: 0.2080 T22: 0.3270 REMARK 3 T33: 0.4002 T12: 0.0136 REMARK 3 T13: 0.0019 T23: -0.1424 REMARK 3 L TENSOR REMARK 3 L11: 1.8748 L22: 3.2087 REMARK 3 L33: 8.1333 L12: 0.5724 REMARK 3 L13: -0.2619 L23: -4.8267 REMARK 3 S TENSOR REMARK 3 S11: 0.2594 S12: 0.1361 S13: -0.2800 REMARK 3 S21: -0.0015 S22: -0.1908 S23: -0.6547 REMARK 3 S31: 0.2491 S32: 0.6852 S33: 0.0104 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9604 16.1821 -34.0695 REMARK 3 T TENSOR REMARK 3 T11: 0.1403 T22: 0.3185 REMARK 3 T33: 0.4250 T12: -0.0403 REMARK 3 T13: 0.0082 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 0.8358 L22: 2.7939 REMARK 3 L33: 1.4537 L12: 0.4733 REMARK 3 L13: -0.8159 L23: -0.2104 REMARK 3 S TENSOR REMARK 3 S11: -0.0735 S12: 0.0393 S13: -0.0476 REMARK 3 S21: -0.0197 S22: 0.1955 S23: 0.6925 REMARK 3 S31: -0.0048 S32: -0.1069 S33: -0.1479 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2999 18.5980 -24.2382 REMARK 3 T TENSOR REMARK 3 T11: 0.3877 T22: 0.4155 REMARK 3 T33: 0.4264 T12: -0.0524 REMARK 3 T13: 0.1711 T23: 0.0548 REMARK 3 L TENSOR REMARK 3 L11: 1.0081 L22: 6.6945 REMARK 3 L33: 1.6705 L12: 1.7727 REMARK 3 L13: -0.4155 L23: -2.3724 REMARK 3 S TENSOR REMARK 3 S11: 0.3172 S12: -0.3882 S13: 0.2869 REMARK 3 S21: 0.9120 S22: -0.5005 S23: 0.3672 REMARK 3 S31: -0.6189 S32: -0.4722 S33: -0.1205 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3058 14.3133 -23.4631 REMARK 3 T TENSOR REMARK 3 T11: 0.6381 T22: 0.5379 REMARK 3 T33: 0.9507 T12: -0.0550 REMARK 3 T13: 0.3952 T23: 0.0304 REMARK 3 L TENSOR REMARK 3 L11: 1.4941 L22: 4.7227 REMARK 3 L33: 1.0537 L12: -1.3907 REMARK 3 L13: 0.9988 L23: 0.1923 REMARK 3 S TENSOR REMARK 3 S11: 0.1929 S12: 0.0007 S13: -0.1959 REMARK 3 S21: 0.8306 S22: 0.4578 S23: 0.9214 REMARK 3 S31: -0.3119 S32: -0.7809 S33: 0.0688 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0120 16.3575 -34.5874 REMARK 3 T TENSOR REMARK 3 T11: 0.2365 T22: 0.3268 REMARK 3 T33: 0.6323 T12: -0.0098 REMARK 3 T13: 0.0086 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.6246 L22: 4.5760 REMARK 3 L33: 2.5681 L12: -0.9771 REMARK 3 L13: 0.5894 L23: -0.1068 REMARK 3 S TENSOR REMARK 3 S11: -0.1193 S12: -0.0318 S13: 0.1177 REMARK 3 S21: 0.0224 S22: 0.3269 S23: 1.0548 REMARK 3 S31: -0.1318 S32: -0.5226 S33: -0.1689 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9892 21.7594 -30.1132 REMARK 3 T TENSOR REMARK 3 T11: 0.1179 T22: 0.3427 REMARK 3 T33: 0.3365 T12: 0.0385 REMARK 3 T13: 0.0424 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.4102 L22: 3.8085 REMARK 3 L33: 2.2793 L12: -0.4255 REMARK 3 L13: 0.5554 L23: 0.3359 REMARK 3 S TENSOR REMARK 3 S11: 0.0627 S12: 0.0566 S13: 0.0589 REMARK 3 S21: 0.1984 S22: 0.1777 S23: 0.9934 REMARK 3 S31: 0.1408 S32: -0.2072 S33: -0.0551 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3810 23.1604 -31.6892 REMARK 3 T TENSOR REMARK 3 T11: 0.1272 T22: 0.2750 REMARK 3 T33: 0.2283 T12: 0.0025 REMARK 3 T13: 0.0630 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 2.8587 L22: 8.1284 REMARK 3 L33: 3.5240 L12: -3.6565 REMARK 3 L13: 2.5577 L23: -3.9735 REMARK 3 S TENSOR REMARK 3 S11: -0.3680 S12: 0.1603 S13: 0.4124 REMARK 3 S21: 0.3509 S22: 0.3067 S23: -0.4411 REMARK 3 S31: -0.0361 S32: 0.0368 S33: 0.1699 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9257 43.6023 -32.9468 REMARK 3 T TENSOR REMARK 3 T11: 0.2504 T22: 0.3752 REMARK 3 T33: 0.6431 T12: 0.0412 REMARK 3 T13: 0.1564 T23: 0.0828 REMARK 3 L TENSOR REMARK 3 L11: 6.0896 L22: 7.6230 REMARK 3 L33: 3.7050 L12: 1.1556 REMARK 3 L13: 4.2716 L23: -1.4835 REMARK 3 S TENSOR REMARK 3 S11: 0.4511 S12: -0.5889 S13: -0.2206 REMARK 3 S21: 0.7115 S22: 0.3541 S23: 1.0924 REMARK 3 S31: -0.1421 S32: -0.9607 S33: -0.1829 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7974 13.8295 -8.9164 REMARK 3 T TENSOR REMARK 3 T11: 0.2722 T22: 0.4801 REMARK 3 T33: 0.2865 T12: -0.1553 REMARK 3 T13: 0.0297 T23: 0.0788 REMARK 3 L TENSOR REMARK 3 L11: 2.8408 L22: 6.9935 REMARK 3 L33: 5.0753 L12: 0.2153 REMARK 3 L13: 0.5203 L23: 2.3598 REMARK 3 S TENSOR REMARK 3 S11: 0.2088 S12: -0.1580 S13: 0.0808 REMARK 3 S21: 0.2046 S22: -0.3099 S23: 0.4412 REMARK 3 S31: 0.2607 S32: -1.0742 S33: 0.0336 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6656 15.0719 -5.5290 REMARK 3 T TENSOR REMARK 3 T11: 0.2201 T22: 0.2837 REMARK 3 T33: 0.2662 T12: 0.0239 REMARK 3 T13: 0.0228 T23: 0.0618 REMARK 3 L TENSOR REMARK 3 L11: 2.1144 L22: 2.4799 REMARK 3 L33: 2.7685 L12: 0.9212 REMARK 3 L13: -0.1724 L23: 0.5570 REMARK 3 S TENSOR REMARK 3 S11: -0.2399 S12: 0.0438 S13: -0.2120 REMARK 3 S21: 0.7314 S22: 0.2045 S23: 0.0147 REMARK 3 S31: 0.4182 S32: -0.1618 S33: 0.1678 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4055 12.4293 -17.7201 REMARK 3 T TENSOR REMARK 3 T11: 0.4533 T22: 0.3722 REMARK 3 T33: 0.3261 T12: -0.1419 REMARK 3 T13: 0.0351 T23: -0.1007 REMARK 3 L TENSOR REMARK 3 L11: 3.5245 L22: 1.7444 REMARK 3 L33: 3.0588 L12: 0.5814 REMARK 3 L13: 0.6642 L23: 1.5374 REMARK 3 S TENSOR REMARK 3 S11: -0.5085 S12: 0.7267 S13: -0.3852 REMARK 3 S21: -0.5660 S22: 0.1845 S23: 0.2081 REMARK 3 S31: -0.0979 S32: 0.4317 S33: 0.3806 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7876 9.8872 -19.0774 REMARK 3 T TENSOR REMARK 3 T11: 0.5349 T22: 0.6324 REMARK 3 T33: 0.9160 T12: -0.2690 REMARK 3 T13: 0.2554 T23: -0.2475 REMARK 3 L TENSOR REMARK 3 L11: 3.5164 L22: 7.3601 REMARK 3 L33: 2.5082 L12: 2.2279 REMARK 3 L13: 2.3746 L23: -0.8001 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: 0.2105 S13: -1.3146 REMARK 3 S21: -0.6322 S22: 0.5465 S23: -0.5992 REMARK 3 S31: 0.3174 S32: 0.2608 S33: 0.3271 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9414 20.2698 -13.6945 REMARK 3 T TENSOR REMARK 3 T11: 0.0944 T22: 0.6494 REMARK 3 T33: 0.6614 T12: -0.4681 REMARK 3 T13: 0.4270 T23: -0.3019 REMARK 3 L TENSOR REMARK 3 L11: 1.0677 L22: 1.1862 REMARK 3 L33: 1.4290 L12: 0.6579 REMARK 3 L13: -0.9368 L23: -0.9200 REMARK 3 S TENSOR REMARK 3 S11: -0.1240 S12: 0.3343 S13: -0.2283 REMARK 3 S21: -0.3068 S22: 0.3316 S23: -0.2561 REMARK 3 S31: 0.0185 S32: 0.1425 S33: 0.1781 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 85 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2015 6.6830 -6.5466 REMARK 3 T TENSOR REMARK 3 T11: 0.3147 T22: 0.2978 REMARK 3 T33: 0.3560 T12: 0.0961 REMARK 3 T13: -0.0342 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 0.0795 L22: 8.4248 REMARK 3 L33: 6.9821 L12: -0.6616 REMARK 3 L13: 0.3460 L23: -1.6648 REMARK 3 S TENSOR REMARK 3 S11: 0.0258 S12: -0.1168 S13: -0.7471 REMARK 3 S21: 0.9018 S22: 0.1050 S23: -0.8708 REMARK 3 S31: 0.8281 S32: 0.8247 S33: -0.0187 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6983 17.5675 -11.3004 REMARK 3 T TENSOR REMARK 3 T11: 0.2515 T22: 0.3285 REMARK 3 T33: 0.1454 T12: -0.0874 REMARK 3 T13: -0.0165 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 2.9367 L22: 4.5350 REMARK 3 L33: 3.0413 L12: 1.7799 REMARK 3 L13: 0.5110 L23: 1.2353 REMARK 3 S TENSOR REMARK 3 S11: -0.1933 S12: 0.4485 S13: -0.4594 REMARK 3 S21: 0.2169 S22: 0.0955 S23: -0.5781 REMARK 3 S31: 0.0650 S32: 0.2538 S33: 0.1057 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 121 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1539 21.6022 -11.3935 REMARK 3 T TENSOR REMARK 3 T11: 0.2556 T22: 0.3236 REMARK 3 T33: 0.2023 T12: -0.0725 REMARK 3 T13: -0.0119 T23: -0.0607 REMARK 3 L TENSOR REMARK 3 L11: 5.5110 L22: 5.6640 REMARK 3 L33: 6.7389 L12: 5.5963 REMARK 3 L13: 6.0875 L23: 6.1610 REMARK 3 S TENSOR REMARK 3 S11: -0.3738 S12: 0.2179 S13: 0.5796 REMARK 3 S21: -0.0635 S22: -0.1040 S23: 0.6822 REMARK 3 S31: -0.0533 S32: -0.3301 S33: 0.3005 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4803 38.3317 -7.3996 REMARK 3 T TENSOR REMARK 3 T11: -0.1250 T22: 0.4229 REMARK 3 T33: 0.4261 T12: -0.4481 REMARK 3 T13: -0.8818 T23: 0.1099 REMARK 3 L TENSOR REMARK 3 L11: 0.1847 L22: 0.0512 REMARK 3 L33: -0.0015 L12: -0.0941 REMARK 3 L13: -0.0113 L23: 0.0019 REMARK 3 S TENSOR REMARK 3 S11: 0.1711 S12: -0.6227 S13: 0.1057 REMARK 3 S21: 0.5546 S22: -0.1416 S23: -0.9856 REMARK 3 S31: -0.2159 S32: 0.6766 S33: 0.1927 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 18 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7390 53.0222 -34.6738 REMARK 3 T TENSOR REMARK 3 T11: 0.3173 T22: 0.2230 REMARK 3 T33: 0.3400 T12: 0.0496 REMARK 3 T13: 0.1161 T23: 0.0818 REMARK 3 L TENSOR REMARK 3 L11: 1.7024 L22: 3.7307 REMARK 3 L33: 1.3699 L12: 1.0812 REMARK 3 L13: 1.3296 L23: 0.6757 REMARK 3 S TENSOR REMARK 3 S11: -0.0830 S12: 0.0082 S13: 0.2286 REMARK 3 S21: -0.2003 S22: 0.2379 S23: 0.7696 REMARK 3 S31: -0.5289 S32: -0.2700 S33: -0.0802 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 36 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8301 63.9318 -30.0625 REMARK 3 T TENSOR REMARK 3 T11: 0.4264 T22: 0.2406 REMARK 3 T33: 0.2739 T12: 0.0572 REMARK 3 T13: 0.0687 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.6295 L22: 6.0479 REMARK 3 L33: 2.7091 L12: 1.9488 REMARK 3 L13: -0.0970 L23: 2.2112 REMARK 3 S TENSOR REMARK 3 S11: 0.2128 S12: -0.0360 S13: 0.2111 REMARK 3 S21: 0.5528 S22: 0.0650 S23: 0.2997 REMARK 3 S31: -0.2560 S32: 0.0174 S33: -0.1941 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 60 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9283 58.0381 -28.5377 REMARK 3 T TENSOR REMARK 3 T11: 0.4945 T22: 0.5925 REMARK 3 T33: 0.4278 T12: 0.0148 REMARK 3 T13: -0.1741 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 4.3409 L22: 7.2421 REMARK 3 L33: 2.8397 L12: -0.2109 REMARK 3 L13: 0.6496 L23: 0.8378 REMARK 3 S TENSOR REMARK 3 S11: 0.4697 S12: 0.2791 S13: 0.1628 REMARK 3 S21: 1.0630 S22: -0.1152 S23: -1.7018 REMARK 3 S31: 0.4484 S32: 1.1473 S33: 0.0156 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 74 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6565 50.5980 -33.9954 REMARK 3 T TENSOR REMARK 3 T11: 0.8818 T22: 1.0364 REMARK 3 T33: 1.2845 T12: 0.3625 REMARK 3 T13: -0.1792 T23: -0.4686 REMARK 3 L TENSOR REMARK 3 L11: 0.3584 L22: 0.3913 REMARK 3 L33: 0.7053 L12: 0.3728 REMARK 3 L13: -0.4974 L23: -0.5284 REMARK 3 S TENSOR REMARK 3 S11: -0.3459 S12: -0.8146 S13: 0.9396 REMARK 3 S21: 0.8063 S22: -0.1133 S23: -1.4218 REMARK 3 S31: -0.1887 S32: 0.8793 S33: -0.2002 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 85 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9396 57.3876 -33.9055 REMARK 3 T TENSOR REMARK 3 T11: 0.3507 T22: 0.3116 REMARK 3 T33: 0.2682 T12: 0.0425 REMARK 3 T13: 0.0850 T23: -0.0448 REMARK 3 L TENSOR REMARK 3 L11: 0.2721 L22: 7.3082 REMARK 3 L33: 0.4358 L12: 0.6617 REMARK 3 L13: 0.0186 L23: 0.7604 REMARK 3 S TENSOR REMARK 3 S11: -0.0815 S12: -0.0321 S13: -0.0196 REMARK 3 S21: 0.0794 S22: 0.3267 S23: -0.3982 REMARK 3 S31: -0.4208 S32: -0.0498 S33: -0.1593 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 121 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6405 41.1165 -34.3658 REMARK 3 T TENSOR REMARK 3 T11: 0.2387 T22: 0.2912 REMARK 3 T33: 0.2794 T12: 0.0119 REMARK 3 T13: 0.0788 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.1770 L22: 5.7355 REMARK 3 L33: 1.3034 L12: -0.0836 REMARK 3 L13: -0.1365 L23: 0.6113 REMARK 3 S TENSOR REMARK 3 S11: -0.1126 S12: 0.0361 S13: 0.0512 REMARK 3 S21: 0.1944 S22: 0.3486 S23: -0.4429 REMARK 3 S31: -0.1699 S32: 0.2445 S33: -0.2062 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 18 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7238 57.2927 -12.1314 REMARK 3 T TENSOR REMARK 3 T11: 0.7008 T22: 0.5521 REMARK 3 T33: 0.5125 T12: -0.3026 REMARK 3 T13: -0.1054 T23: 0.0535 REMARK 3 L TENSOR REMARK 3 L11: 4.2863 L22: 2.4713 REMARK 3 L33: 1.7397 L12: -1.0220 REMARK 3 L13: 0.1359 L23: 1.9360 REMARK 3 S TENSOR REMARK 3 S11: -0.1717 S12: 0.3224 S13: -0.0910 REMARK 3 S21: 0.6467 S22: 0.2619 S23: -0.8756 REMARK 3 S31: -0.6276 S32: 0.8623 S33: 0.1188 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 27 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7897 54.2723 -3.4989 REMARK 3 T TENSOR REMARK 3 T11: 1.2325 T22: 0.3305 REMARK 3 T33: 0.3728 T12: -0.0718 REMARK 3 T13: -0.2248 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.6984 L22: 1.0324 REMARK 3 L33: 0.2741 L12: -0.1643 REMARK 3 L13: 0.2233 L23: 0.4327 REMARK 3 S TENSOR REMARK 3 S11: -0.1263 S12: -0.0525 S13: 0.2631 REMARK 3 S21: 0.7610 S22: -0.2105 S23: -0.5361 REMARK 3 S31: -0.7400 S32: 0.2513 S33: -0.1227 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 50 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0883 61.5628 -11.6057 REMARK 3 T TENSOR REMARK 3 T11: 1.2874 T22: 0.3570 REMARK 3 T33: 0.4768 T12: -0.0828 REMARK 3 T13: -0.0203 T23: 0.0843 REMARK 3 L TENSOR REMARK 3 L11: 0.8594 L22: 5.1350 REMARK 3 L33: 0.0575 L12: 0.0976 REMARK 3 L13: 0.0924 L23: -0.4587 REMARK 3 S TENSOR REMARK 3 S11: -0.0208 S12: 0.1737 S13: 0.6227 REMARK 3 S21: 0.2434 S22: 0.0803 S23: 0.2020 REMARK 3 S31: -1.0802 S32: -0.3155 S33: -0.0484 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 60 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8526 58.4111 -9.6968 REMARK 3 T TENSOR REMARK 3 T11: 1.2157 T22: 0.3677 REMARK 3 T33: 0.5130 T12: 0.1427 REMARK 3 T13: 0.1187 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.1574 L22: 3.3520 REMARK 3 L33: 0.3367 L12: 1.9664 REMARK 3 L13: 0.6159 L23: 1.0297 REMARK 3 S TENSOR REMARK 3 S11: 0.0311 S12: -0.2522 S13: 0.7660 REMARK 3 S21: 0.1467 S22: -0.0956 S23: 0.9985 REMARK 3 S31: -0.9139 S32: -0.3550 S33: 0.1077 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 79 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0194 50.6388 -3.5198 REMARK 3 T TENSOR REMARK 3 T11: 1.4272 T22: 0.5443 REMARK 3 T33: 0.4786 T12: -0.0604 REMARK 3 T13: 0.4376 T23: 0.0411 REMARK 3 L TENSOR REMARK 3 L11: 3.3397 L22: 1.0443 REMARK 3 L33: 6.7723 L12: 1.7929 REMARK 3 L13: 4.3597 L23: 2.3409 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: -0.1877 S13: 0.3868 REMARK 3 S21: 0.9595 S22: 0.1242 S23: 0.5085 REMARK 3 S31: -1.0035 S32: -0.5646 S33: 0.1495 REMARK 3 TLS GROUP : 29 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 85 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2178 63.1189 -1.1986 REMARK 3 T TENSOR REMARK 3 T11: 1.6098 T22: 0.4982 REMARK 3 T33: 0.4402 T12: 0.1135 REMARK 3 T13: -0.0481 T23: -0.0322 REMARK 3 L TENSOR REMARK 3 L11: 1.0637 L22: 0.5666 REMARK 3 L33: 0.2974 L12: 0.2458 REMARK 3 L13: 0.4062 L23: 0.3682 REMARK 3 S TENSOR REMARK 3 S11: 0.1491 S12: -0.8491 S13: 0.2858 REMARK 3 S21: 1.2826 S22: -0.4387 S23: 0.0140 REMARK 3 S31: -0.4187 S32: -0.0931 S33: 0.0097 REMARK 3 TLS GROUP : 30 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 95 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3779 53.5208 -7.4525 REMARK 3 T TENSOR REMARK 3 T11: 1.1963 T22: 0.3353 REMARK 3 T33: 0.3228 T12: -0.0820 REMARK 3 T13: -0.1432 T23: 0.0527 REMARK 3 L TENSOR REMARK 3 L11: 0.5731 L22: 3.1246 REMARK 3 L33: 0.5144 L12: 0.2225 REMARK 3 L13: 0.2911 L23: 1.1734 REMARK 3 S TENSOR REMARK 3 S11: 0.0205 S12: 0.0206 S13: 0.2552 REMARK 3 S21: 0.8871 S22: 0.0595 S23: 0.3028 REMARK 3 S31: -1.1209 S32: -0.1428 S33: -0.0435 REMARK 3 TLS GROUP : 31 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 121 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4058 49.1626 -11.8666 REMARK 3 T TENSOR REMARK 3 T11: 0.6427 T22: 0.3294 REMARK 3 T33: 0.3533 T12: -0.1552 REMARK 3 T13: -0.1318 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 0.9232 L22: 3.0436 REMARK 3 L33: 1.4353 L12: 0.9849 REMARK 3 L13: -0.4182 L23: -1.3750 REMARK 3 S TENSOR REMARK 3 S11: -0.1725 S12: 0.0744 S13: -0.1820 REMARK 3 S21: 0.5394 S22: -0.2459 S23: -0.5027 REMARK 3 S31: -0.7278 S32: 0.3238 S33: 0.0695 REMARK 3 TLS GROUP : 32 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 132 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5743 31.1645 -0.6844 REMARK 3 T TENSOR REMARK 3 T11: 0.3273 T22: 0.3979 REMARK 3 T33: 0.3735 T12: 0.1036 REMARK 3 T13: -0.0805 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 3.0827 L22: 5.2639 REMARK 3 L33: 5.8090 L12: 2.3604 REMARK 3 L13: -2.0040 L23: 1.3091 REMARK 3 S TENSOR REMARK 3 S11: 0.1118 S12: 1.1707 S13: 0.9388 REMARK 3 S21: -0.4971 S22: -0.1465 S23: 1.5077 REMARK 3 S31: -0.8705 S32: -0.9953 S33: 0.0021 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N2D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003446. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23740 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 42.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.30500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5J89 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 0.2 M MAGNESIUM REMARK 280 CHLORIDE, 30% (W/V) PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.60050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.56300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.86700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.56300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.60050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.86700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 2 REMARK 465 ILE A 3 REMARK 465 PHE A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 PHE A 7 REMARK 465 ILE A 8 REMARK 465 PHE A 9 REMARK 465 MET A 10 REMARK 465 THR A 11 REMARK 465 TYR A 12 REMARK 465 TRP A 13 REMARK 465 HIS A 14 REMARK 465 LEU A 15 REMARK 465 LEU A 16 REMARK 465 ASN A 17 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 ARG B 2 REMARK 465 ILE B 3 REMARK 465 PHE B 4 REMARK 465 ALA B 5 REMARK 465 VAL B 6 REMARK 465 PHE B 7 REMARK 465 ILE B 8 REMARK 465 PHE B 9 REMARK 465 MET B 10 REMARK 465 THR B 11 REMARK 465 TYR B 12 REMARK 465 TRP B 13 REMARK 465 HIS B 14 REMARK 465 LEU B 15 REMARK 465 LEU B 16 REMARK 465 ASN B 17 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 ARG C 2 REMARK 465 ILE C 3 REMARK 465 PHE C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 PHE C 7 REMARK 465 ILE C 8 REMARK 465 PHE C 9 REMARK 465 MET C 10 REMARK 465 THR C 11 REMARK 465 TYR C 12 REMARK 465 TRP C 13 REMARK 465 HIS C 14 REMARK 465 LEU C 15 REMARK 465 LEU C 16 REMARK 465 ASN C 17 REMARK 465 HIS C 145 REMARK 465 ARG D 2 REMARK 465 ILE D 3 REMARK 465 PHE D 4 REMARK 465 ALA D 5 REMARK 465 VAL D 6 REMARK 465 PHE D 7 REMARK 465 ILE D 8 REMARK 465 PHE D 9 REMARK 465 MET D 10 REMARK 465 THR D 11 REMARK 465 TYR D 12 REMARK 465 TRP D 13 REMARK 465 HIS D 14 REMARK 465 LEU D 15 REMARK 465 LEU D 16 REMARK 465 ASN D 17 REMARK 465 HIS D 142 REMARK 465 HIS D 143 REMARK 465 HIS D 144 REMARK 465 HIS D 145 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 45 CB CG CD OE1 OE2 REMARK 470 LYS A 46 CB CG CD CE NZ REMARK 470 GLN A 47 CG CD OE1 NE2 REMARK 470 ARG A 82 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 83 CG CD OE1 NE2 REMARK 470 GLU B 45 CB CG CD OE1 OE2 REMARK 470 LYS B 46 CB CG CD CE NZ REMARK 470 GLN B 47 CG CD OE1 NE2 REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 ASP B 73 CG OD1 OD2 REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 ARG B 82 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 83 CG CD OE1 NE2 REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 LYS B 129 CG CD CE NZ REMARK 470 LEU B 138 CG CD1 CD2 REMARK 470 GLU B 139 CG CD OE1 OE2 REMARK 470 GLU C 45 CB CG CD OE1 OE2 REMARK 470 LYS C 46 CB CG CD CE NZ REMARK 470 GLN C 47 CG CD OE1 NE2 REMARK 470 HIS C 69 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 75 CG CD CE NZ REMARK 470 VAL C 76 CG1 CG2 REMARK 470 ARG C 82 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 45 CG CD OE1 OE2 REMARK 470 LYS D 46 CB CG CD CE NZ REMARK 470 GLN D 47 CG CD OE1 NE2 REMARK 470 LEU D 48 CG CD1 CD2 REMARK 470 HIS D 69 CG ND1 CD2 CE1 NE2 REMARK 470 GLU D 71 CG CD OE1 OE2 REMARK 470 ASP D 73 CG OD1 OD2 REMARK 470 LYS D 75 CG CD CE NZ REMARK 470 ARG D 82 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 83 CG CD OE1 NE2 REMARK 470 LYS D 89 CG CD CE NZ REMARK 470 ASP D 90 CG OD1 OD2 REMARK 470 GLN D 91 CG CD OE1 NE2 REMARK 470 LEU D 94 CG CD1 CD2 REMARK 470 LYS D 105 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP C 61 O HOH C 201 1.85 REMARK 500 OH TYR C 118 O HOH C 202 1.85 REMARK 500 O HOH B 310 O HOH B 336 1.99 REMARK 500 N LEU D 92 O HOH D 301 2.02 REMARK 500 NH1 ARG B 86 O HOH B 301 2.03 REMARK 500 O GLU B 60 O HOH B 302 2.05 REMARK 500 NZ LYS D 124 O HOH D 302 2.05 REMARK 500 OD1 ASP A 108 O HOH A 201 2.08 REMARK 500 O HOH D 317 O HOH D 323 2.09 REMARK 500 O HOH B 303 O HOH B 332 2.14 REMARK 500 OE2 GLU D 58 O HOH D 303 2.14 REMARK 500 OE1 GLU B 31 O HOH B 303 2.14 REMARK 500 O HOH A 242 O HOH A 248 2.14 REMARK 500 N GLN D 91 O HOH D 301 2.15 REMARK 500 O SER D 80 NH2 ARG D 84 2.15 REMARK 500 OD1 ASP A 26 O HOH A 202 2.17 REMARK 500 O HOH D 311 O HOH D 319 2.17 REMARK 500 OD2 ASP C 61 O HOH C 203 2.17 REMARK 500 O LEU B 106 O HOH B 304 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU D 92 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 46 -89.48 -120.06 REMARK 500 ASP A 61 -2.71 76.90 REMARK 500 LEU A 74 43.92 -100.61 REMARK 500 SER A 80 6.31 -68.51 REMARK 500 ASP A 103 72.78 54.47 REMARK 500 TYR A 118 80.67 -159.42 REMARK 500 HIS A 141 -9.30 -57.31 REMARK 500 LYS B 46 -135.25 -115.87 REMARK 500 ASP B 61 -2.40 74.48 REMARK 500 LEU B 74 34.41 -91.33 REMARK 500 TYR B 118 77.71 -155.33 REMARK 500 LYS C 46 -143.99 -93.99 REMARK 500 ASP C 61 4.53 80.99 REMARK 500 GLN C 83 -15.76 86.45 REMARK 500 ASP C 103 70.58 59.69 REMARK 500 TYR C 118 83.34 -150.47 REMARK 500 PHE D 19 126.69 -31.70 REMARK 500 PRO D 43 106.64 -26.03 REMARK 500 LEU D 48 60.79 -153.85 REMARK 500 ASP D 49 109.76 -55.87 REMARK 500 ASP D 61 -9.30 88.62 REMARK 500 ASP D 103 70.87 58.20 REMARK 500 TYR D 118 81.33 -150.07 REMARK 500 HIS D 140 -86.55 -41.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8J8 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8J8 D 201 DBREF 5N2D A 2 134 UNP Q9NZQ7 PD1L1_HUMAN 2 134 DBREF 5N2D B 2 134 UNP Q9NZQ7 PD1L1_HUMAN 2 134 DBREF 5N2D C 2 134 UNP Q9NZQ7 PD1L1_HUMAN 2 134 DBREF 5N2D D 2 134 UNP Q9NZQ7 PD1L1_HUMAN 2 134 SEQADV 5N2D ALA A 135 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D ALA A 136 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D ALA A 137 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D LEU A 138 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D GLU A 139 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS A 140 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS A 141 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS A 142 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS A 143 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS A 144 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS A 145 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D ALA B 135 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D ALA B 136 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D ALA B 137 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D LEU B 138 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D GLU B 139 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS B 140 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS B 141 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS B 142 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS B 143 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS B 144 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS B 145 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D ALA C 135 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D ALA C 136 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D ALA C 137 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D LEU C 138 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D GLU C 139 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS C 140 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS C 141 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS C 142 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS C 143 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS C 144 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS C 145 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D ALA D 135 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D ALA D 136 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D ALA D 137 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D LEU D 138 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D GLU D 139 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS D 140 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS D 141 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS D 142 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS D 143 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS D 144 UNP Q9NZQ7 EXPRESSION TAG SEQADV 5N2D HIS D 145 UNP Q9NZQ7 EXPRESSION TAG SEQRES 1 A 144 ARG ILE PHE ALA VAL PHE ILE PHE MET THR TYR TRP HIS SEQRES 2 A 144 LEU LEU ASN ALA PHE THR VAL THR VAL PRO LYS ASP LEU SEQRES 3 A 144 TYR VAL VAL GLU TYR GLY SER ASN MET THR ILE GLU CYS SEQRES 4 A 144 LYS PHE PRO VAL GLU LYS GLN LEU ASP LEU ALA ALA LEU SEQRES 5 A 144 ILE VAL TYR TRP GLU MET GLU ASP LYS ASN ILE ILE GLN SEQRES 6 A 144 PHE VAL HIS GLY GLU GLU ASP LEU LYS VAL GLN HIS SER SEQRES 7 A 144 SER TYR ARG GLN ARG ALA ARG LEU LEU LYS ASP GLN LEU SEQRES 8 A 144 SER LEU GLY ASN ALA ALA LEU GLN ILE THR ASP VAL LYS SEQRES 9 A 144 LEU GLN ASP ALA GLY VAL TYR ARG CYS MET ILE SER TYR SEQRES 10 A 144 GLY GLY ALA ASP TYR LYS ARG ILE THR VAL LYS VAL ASN SEQRES 11 A 144 ALA PRO TYR ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 12 A 144 HIS SEQRES 1 B 144 ARG ILE PHE ALA VAL PHE ILE PHE MET THR TYR TRP HIS SEQRES 2 B 144 LEU LEU ASN ALA PHE THR VAL THR VAL PRO LYS ASP LEU SEQRES 3 B 144 TYR VAL VAL GLU TYR GLY SER ASN MET THR ILE GLU CYS SEQRES 4 B 144 LYS PHE PRO VAL GLU LYS GLN LEU ASP LEU ALA ALA LEU SEQRES 5 B 144 ILE VAL TYR TRP GLU MET GLU ASP LYS ASN ILE ILE GLN SEQRES 6 B 144 PHE VAL HIS GLY GLU GLU ASP LEU LYS VAL GLN HIS SER SEQRES 7 B 144 SER TYR ARG GLN ARG ALA ARG LEU LEU LYS ASP GLN LEU SEQRES 8 B 144 SER LEU GLY ASN ALA ALA LEU GLN ILE THR ASP VAL LYS SEQRES 9 B 144 LEU GLN ASP ALA GLY VAL TYR ARG CYS MET ILE SER TYR SEQRES 10 B 144 GLY GLY ALA ASP TYR LYS ARG ILE THR VAL LYS VAL ASN SEQRES 11 B 144 ALA PRO TYR ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 12 B 144 HIS SEQRES 1 C 144 ARG ILE PHE ALA VAL PHE ILE PHE MET THR TYR TRP HIS SEQRES 2 C 144 LEU LEU ASN ALA PHE THR VAL THR VAL PRO LYS ASP LEU SEQRES 3 C 144 TYR VAL VAL GLU TYR GLY SER ASN MET THR ILE GLU CYS SEQRES 4 C 144 LYS PHE PRO VAL GLU LYS GLN LEU ASP LEU ALA ALA LEU SEQRES 5 C 144 ILE VAL TYR TRP GLU MET GLU ASP LYS ASN ILE ILE GLN SEQRES 6 C 144 PHE VAL HIS GLY GLU GLU ASP LEU LYS VAL GLN HIS SER SEQRES 7 C 144 SER TYR ARG GLN ARG ALA ARG LEU LEU LYS ASP GLN LEU SEQRES 8 C 144 SER LEU GLY ASN ALA ALA LEU GLN ILE THR ASP VAL LYS SEQRES 9 C 144 LEU GLN ASP ALA GLY VAL TYR ARG CYS MET ILE SER TYR SEQRES 10 C 144 GLY GLY ALA ASP TYR LYS ARG ILE THR VAL LYS VAL ASN SEQRES 11 C 144 ALA PRO TYR ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 12 C 144 HIS SEQRES 1 D 144 ARG ILE PHE ALA VAL PHE ILE PHE MET THR TYR TRP HIS SEQRES 2 D 144 LEU LEU ASN ALA PHE THR VAL THR VAL PRO LYS ASP LEU SEQRES 3 D 144 TYR VAL VAL GLU TYR GLY SER ASN MET THR ILE GLU CYS SEQRES 4 D 144 LYS PHE PRO VAL GLU LYS GLN LEU ASP LEU ALA ALA LEU SEQRES 5 D 144 ILE VAL TYR TRP GLU MET GLU ASP LYS ASN ILE ILE GLN SEQRES 6 D 144 PHE VAL HIS GLY GLU GLU ASP LEU LYS VAL GLN HIS SER SEQRES 7 D 144 SER TYR ARG GLN ARG ALA ARG LEU LEU LYS ASP GLN LEU SEQRES 8 D 144 SER LEU GLY ASN ALA ALA LEU GLN ILE THR ASP VAL LYS SEQRES 9 D 144 LEU GLN ASP ALA GLY VAL TYR ARG CYS MET ILE SER TYR SEQRES 10 D 144 GLY GLY ALA ASP TYR LYS ARG ILE THR VAL LYS VAL ASN SEQRES 11 D 144 ALA PRO TYR ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 12 D 144 HIS HET 8J8 B 201 33 HET 8J8 D 201 33 HETNAM 8J8 ~{N}-[2-[[2,6-DIMETHOXY-4-[(2-METHYL-3-PHENYL-PHENYL) HETNAM 2 8J8 METHOXY]PHENYL]METHYLAMINO]ETHYL]ETHANAMIDE FORMUL 5 8J8 2(C27 H32 N2 O4) FORMUL 7 HOH *171(H2 O) HELIX 1 AA1 ASP A 49 ALA A 52 5 4 HELIX 2 AA2 HIS A 78 ARG A 82 5 5 HELIX 3 AA3 LEU A 88 SER A 93 1 6 HELIX 4 AA4 LYS A 105 ALA A 109 5 5 HELIX 5 AA5 PRO A 133 HIS A 141 1 9 HELIX 6 AA6 ASP B 49 ALA B 52 5 4 HELIX 7 AA7 HIS B 78 ARG B 82 5 5 HELIX 8 AA8 LYS B 89 LEU B 94 5 6 HELIX 9 AA9 LYS B 105 ALA B 109 5 5 HELIX 10 AB1 PRO B 133 HIS B 140 1 8 HELIX 11 AB2 ASP C 49 ALA C 51 5 3 HELIX 12 AB3 LYS C 89 LEU C 94 5 6 HELIX 13 AB4 LYS C 105 ALA C 109 5 5 HELIX 14 AB5 PRO C 133 HIS C 144 1 12 HELIX 15 AB6 HIS D 78 ARG D 82 5 5 HELIX 16 AB7 LYS D 89 GLY D 95 5 7 HELIX 17 AB8 LYS D 105 ALA D 109 5 5 HELIX 18 AB9 PRO D 133 LEU D 138 1 6 SHEET 1 AA1 6 LEU A 27 GLU A 31 0 SHEET 2 AA1 6 ALA A 121 ASN A 131 1 O LYS A 129 N TYR A 28 SHEET 3 AA1 6 GLY A 110 SER A 117 -1 N TYR A 112 O ILE A 126 SHEET 4 AA1 6 ILE A 54 MET A 59 -1 N TYR A 56 O MET A 115 SHEET 5 AA1 6 LYS A 62 VAL A 68 -1 O PHE A 67 N VAL A 55 SHEET 6 AA1 6 GLU A 71 GLU A 72 -1 O GLU A 71 N VAL A 68 SHEET 1 AA2 3 MET A 36 LYS A 41 0 SHEET 2 AA2 3 ASN A 96 ILE A 101 -1 O ILE A 101 N MET A 36 SHEET 3 AA2 3 ALA A 85 LEU A 87 -1 N ARG A 86 O GLN A 100 SHEET 1 AA3 6 LEU B 27 GLU B 31 0 SHEET 2 AA3 6 ALA B 121 ASN B 131 1 O LYS B 129 N VAL B 30 SHEET 3 AA3 6 GLY B 110 SER B 117 -1 N ILE B 116 O ASP B 122 SHEET 4 AA3 6 ILE B 54 MET B 59 -1 N GLU B 58 O ARG B 113 SHEET 5 AA3 6 LYS B 62 VAL B 68 -1 O ILE B 64 N TRP B 57 SHEET 6 AA3 6 GLU B 71 GLU B 72 -1 O GLU B 71 N VAL B 68 SHEET 1 AA4 3 MET B 36 LYS B 41 0 SHEET 2 AA4 3 ASN B 96 ILE B 101 -1 O ALA B 97 N CYS B 40 SHEET 3 AA4 3 ALA B 85 LEU B 87 -1 N ARG B 86 O GLN B 100 SHEET 1 AA5 6 LEU C 27 GLU C 31 0 SHEET 2 AA5 6 ALA C 121 ASN C 131 1 O LYS C 129 N TYR C 28 SHEET 3 AA5 6 GLY C 110 TYR C 118 -1 N TYR C 112 O ILE C 126 SHEET 4 AA5 6 LEU C 53 MET C 59 -1 N TYR C 56 O MET C 115 SHEET 5 AA5 6 LYS C 62 VAL C 68 -1 O ILE C 64 N TRP C 57 SHEET 6 AA5 6 GLU C 71 ASP C 73 -1 O ASP C 73 N GLN C 66 SHEET 1 AA6 3 MET C 36 LYS C 41 0 SHEET 2 AA6 3 ASN C 96 ILE C 101 -1 O ALA C 97 N CYS C 40 SHEET 3 AA6 3 ALA C 85 LEU C 87 -1 N ARG C 86 O GLN C 100 SHEET 1 AA7 6 LEU D 27 GLU D 31 0 SHEET 2 AA7 6 ALA D 121 ASN D 131 1 O LYS D 129 N TYR D 28 SHEET 3 AA7 6 GLY D 110 TYR D 118 -1 N TYR D 112 O ILE D 126 SHEET 4 AA7 6 LEU D 53 MET D 59 -1 N TYR D 56 O MET D 115 SHEET 5 AA7 6 LYS D 62 VAL D 68 -1 O LYS D 62 N MET D 59 SHEET 6 AA7 6 GLU D 71 GLU D 72 -1 O GLU D 71 N VAL D 68 SHEET 1 AA8 3 MET D 36 ILE D 38 0 SHEET 2 AA8 3 LEU D 99 ILE D 101 -1 O ILE D 101 N MET D 36 SHEET 3 AA8 3 ALA D 85 LEU D 87 -1 N ARG D 86 O GLN D 100 SSBOND 1 CYS A 40 CYS A 114 1555 1555 2.05 SSBOND 2 CYS B 40 CYS B 114 1555 1555 2.04 SSBOND 3 CYS C 40 CYS C 114 1555 1555 2.03 SSBOND 4 CYS D 40 CYS D 114 1555 1555 2.03 CISPEP 1 GLN D 47 LEU D 48 0 -6.27 CISPEP 2 GLU D 139 HIS D 140 0 -2.45 SITE 1 AC1 17 ALA A 18 PHE A 19 THR A 20 TYR A 56 SITE 2 AC1 17 MET A 115 ILE A 116 SER A 117 ALA A 121 SITE 3 AC1 17 ASP A 122 TYR A 123 ILE B 54 TYR B 56 SITE 4 AC1 17 GLN B 66 VAL B 68 MET B 115 ILE B 116 SITE 5 AC1 17 SER B 117 SITE 1 AC2 14 THR C 20 TYR C 56 MET C 115 ILE C 116 SITE 2 AC2 14 ALA C 121 ASP C 122 LYS C 124 ILE D 54 SITE 3 AC2 14 TYR D 56 GLN D 66 VAL D 68 MET D 115 SITE 4 AC2 14 ILE D 116 SER D 117 CRYST1 41.201 85.734 161.126 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024271 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011664 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006206 0.00000