HEADER TRANSFERASE 08-FEB-17 5N2N TITLE CRYSTAL STRUCTURE OF THE RECEIVER DOMAIN OF THE HISTIDINE KINASE CKI1 TITLE 2 FROM ARABIDOPSIS THALIANA COMPLEXED WITH MG2+ AND BEF3- COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE KINASE CKI1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN CYTOKININ-INDEPENDENT 1; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: CKI1, AT2G47430, T30B22.27; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS RECEIVER DOMAIN, HISTIDINE KINASE CKI1, (ALPHA/BETA)5 FOLD, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR O.OTRUSINOVA,G.DEMO,P.PADRTA,Z.JASENAKOVA,B.PEKAROVA,Z.GELOVA, AUTHOR 2 A.SZMITKOWSKA,P.KADERAVEK,S.JANSEN,M.ZACHRDLA,T.KLUMPLER,J.MAREK, AUTHOR 3 J.HRITZ,L.JANDA,H.IWAI,M.WIMMEROVA,J.HEJATKO,L.ZIDEK REVDAT 3 17-JAN-24 5N2N 1 LINK REVDAT 2 01-NOV-17 5N2N 1 JRNL REVDAT 1 13-SEP-17 5N2N 0 JRNL AUTH O.OTRUSINOVA,G.DEMO,P.PADRTA,Z.JASENAKOVA,B.PEKAROVA, JRNL AUTH 2 Z.GELOVA,A.SZMITKOWSKA,P.KADERAVEK,S.JANSEN,M.ZACHRDLA, JRNL AUTH 3 T.KLUMPLER,J.MAREK,J.HRITZ,L.JANDA,H.IWAI,M.WIMMEROVA, JRNL AUTH 4 J.HEJATKO,L.ZIDEK JRNL TITL CONFORMATIONAL DYNAMICS ARE A KEY FACTOR IN SIGNALING JRNL TITL 2 MEDIATED BY THE RECEIVER DOMAIN OF A SENSOR HISTIDINE KINASE JRNL TITL 3 FROM ARABIDOPSIS THALIANA. JRNL REF J. BIOL. CHEM. V. 292 17525 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28860196 JRNL DOI 10.1074/JBC.M117.790212 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 658 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 936 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1160 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.23000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : -3.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.034 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1182 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1136 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1573 ; 1.850 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2629 ; 1.020 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 147 ; 6.029 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ;39.178 ;24.821 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 228 ;16.178 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;22.273 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 176 ; 0.158 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1315 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 241 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 594 ; 4.159 ; 4.102 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 593 ; 4.150 ; 4.098 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 739 ; 5.479 ; 6.123 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 740 ; 5.478 ; 6.128 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 588 ; 6.212 ; 4.957 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 583 ; 6.220 ; 4.969 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 832 ; 9.337 ; 7.108 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1337 ;11.288 ;33.282 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1329 ;11.301 ;33.238 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5N2N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003359. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.05 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13705 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 46.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3MM4 REMARK 200 REMARK 200 REMARK: PRISM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.54 M (NH4)2(SO4), 0.1 M MES PH 5.05, REMARK 280 12% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.06950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.06950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.42500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.07600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.42500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.07600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.06950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.42500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.07600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.06950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.42500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.07600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1342 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 925 REMARK 465 SER A 926 REMARK 465 SER A 927 REMARK 465 HIS A 928 REMARK 465 HIS A 929 REMARK 465 HIS A 930 REMARK 465 HIS A 931 REMARK 465 HIS A 932 REMARK 465 HIS A 933 REMARK 465 ARG A 940 REMARK 465 GLY A 941 REMARK 465 SER A 942 REMARK 465 HIS A 943 REMARK 465 MET A 944 REMARK 465 ALA A 945 REMARK 465 SER A 946 REMARK 465 THR A 947 REMARK 465 ASP A 948 REMARK 465 SER A 949 REMARK 465 GLU A 950 REMARK 465 SER A 951 REMARK 465 GLU A 952 REMARK 465 THR A 953 REMARK 465 ARG A 954 REMARK 465 VAL A 955 REMARK 465 LYS A 956 REMARK 465 SER A 957 REMARK 465 VAL A 958 REMARK 465 ARG A 959 REMARK 465 THR A 960 REMARK 465 GLY A 961 REMARK 465 ARG A 962 REMARK 465 LYS A 963 REMARK 465 PRO A 964 REMARK 465 ILE A 965 REMARK 465 GLY A 966 REMARK 465 ASN A 967 REMARK 465 PRO A 968 REMARK 465 GLU A 969 REMARK 465 ASP A 970 REMARK 465 GLU A 971 REMARK 465 GLN A 972 REMARK 465 GLU A 973 REMARK 465 THR A 974 REMARK 465 SER A 975 REMARK 465 LYS A 976 REMARK 465 PRO A 977 REMARK 465 ARG A 1121 REMARK 465 HIS A 1122 REMARK 465 LEU A 1123 REMARK 465 GLU A 1124 REMARK 465 HIS A 1125 REMARK 465 HIS A 1126 REMARK 465 HIS A 1127 REMARK 465 HIS A 1128 REMARK 465 HIS A 1129 REMARK 465 HIS A 1130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1347 O HOH A 1348 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 998 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 ASP A1050 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 979 30.13 -140.95 REMARK 500 GLU A1055 -68.74 75.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 993 OD1 REMARK 620 2 ASP A1050 OD2 78.5 REMARK 620 3 GLN A1052 O 93.7 84.4 REMARK 620 4 HOH A1305 O 91.4 84.8 166.9 REMARK 620 5 HOH A1309 O 104.7 159.1 74.8 115.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A1202 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A1050 OD1 REMARK 620 2 BEF A1202 F1 93.3 REMARK 620 3 BEF A1202 F2 99.7 112.4 REMARK 620 4 BEF A1202 F3 96.6 121.1 122.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF A 1202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MM4 RELATED DB: PDB REMARK 900 RELATED ID: 3MMN RELATED DB: PDB REMARK 900 RELATED ID: 5LNM RELATED DB: PDB REMARK 900 RELATED ID: 5LNN RELATED DB: PDB DBREF 5N2N A 944 1122 UNP O22267 CKI1_ARATH 944 1122 SEQADV 5N2N GLY A 925 UNP O22267 EXPRESSION TAG SEQADV 5N2N SER A 926 UNP O22267 EXPRESSION TAG SEQADV 5N2N SER A 927 UNP O22267 EXPRESSION TAG SEQADV 5N2N HIS A 928 UNP O22267 EXPRESSION TAG SEQADV 5N2N HIS A 929 UNP O22267 EXPRESSION TAG SEQADV 5N2N HIS A 930 UNP O22267 EXPRESSION TAG SEQADV 5N2N HIS A 931 UNP O22267 EXPRESSION TAG SEQADV 5N2N HIS A 932 UNP O22267 EXPRESSION TAG SEQADV 5N2N HIS A 933 UNP O22267 EXPRESSION TAG SEQADV 5N2N SER A 934 UNP O22267 EXPRESSION TAG SEQADV 5N2N SER A 935 UNP O22267 EXPRESSION TAG SEQADV 5N2N GLY A 936 UNP O22267 EXPRESSION TAG SEQADV 5N2N LEU A 937 UNP O22267 EXPRESSION TAG SEQADV 5N2N VAL A 938 UNP O22267 EXPRESSION TAG SEQADV 5N2N PRO A 939 UNP O22267 EXPRESSION TAG SEQADV 5N2N ARG A 940 UNP O22267 EXPRESSION TAG SEQADV 5N2N GLY A 941 UNP O22267 EXPRESSION TAG SEQADV 5N2N SER A 942 UNP O22267 EXPRESSION TAG SEQADV 5N2N HIS A 943 UNP O22267 EXPRESSION TAG SEQADV 5N2N LEU A 1123 UNP O22267 EXPRESSION TAG SEQADV 5N2N GLU A 1124 UNP O22267 EXPRESSION TAG SEQADV 5N2N HIS A 1125 UNP O22267 EXPRESSION TAG SEQADV 5N2N HIS A 1126 UNP O22267 EXPRESSION TAG SEQADV 5N2N HIS A 1127 UNP O22267 EXPRESSION TAG SEQADV 5N2N HIS A 1128 UNP O22267 EXPRESSION TAG SEQADV 5N2N HIS A 1129 UNP O22267 EXPRESSION TAG SEQADV 5N2N HIS A 1130 UNP O22267 EXPRESSION TAG SEQRES 1 A 206 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 206 VAL PRO ARG GLY SER HIS MET ALA SER THR ASP SER GLU SEQRES 3 A 206 SER GLU THR ARG VAL LYS SER VAL ARG THR GLY ARG LYS SEQRES 4 A 206 PRO ILE GLY ASN PRO GLU ASP GLU GLN GLU THR SER LYS SEQRES 5 A 206 PRO SER ASP ASP GLU PHE LEU ARG GLY LYS ARG VAL LEU SEQRES 6 A 206 VAL VAL ASP ASP ASN PHE ILE SER ARG LYS VAL ALA THR SEQRES 7 A 206 GLY LYS LEU LYS LYS MET GLY VAL SER GLU VAL GLU GLN SEQRES 8 A 206 CYS ASP SER GLY LYS GLU ALA LEU ARG LEU VAL THR GLU SEQRES 9 A 206 GLY LEU THR GLN ARG GLU GLU GLN GLY SER VAL ASP LYS SEQRES 10 A 206 LEU PRO PHE ASP TYR ILE PHE MET ASP CYS GLN MET PRO SEQRES 11 A 206 GLU MET ASP GLY TYR GLU ALA THR ARG GLU ILE ARG LYS SEQRES 12 A 206 VAL GLU LYS SER TYR GLY VAL ARG THR PRO ILE ILE ALA SEQRES 13 A 206 VAL SER GLY HIS ASP PRO GLY SER GLU GLU ALA ARG GLU SEQRES 14 A 206 THR ILE GLN ALA GLY MET ASP ALA PHE LEU ASP LYS SER SEQRES 15 A 206 LEU ASN GLN LEU ALA ASN VAL ILE ARG GLU ILE GLU SER SEQRES 16 A 206 LYS ARG HIS LEU GLU HIS HIS HIS HIS HIS HIS HET MG A1201 1 HET BEF A1202 4 HETNAM MG MAGNESIUM ION HETNAM BEF BERYLLIUM TRIFLUORIDE ION FORMUL 2 MG MG 2+ FORMUL 3 BEF BE F3 1- FORMUL 4 HOH *53(H2 O) HELIX 1 AA1 ASN A 994 MET A 1008 1 15 HELIX 2 AA2 SER A 1018 GLY A 1037 1 20 HELIX 3 AA3 ASP A 1057 SER A 1071 1 15 HELIX 4 AA4 GLY A 1087 GLY A 1098 1 12 HELIX 5 AA5 GLN A 1109 LYS A 1120 1 12 SHEET 1 AA1 6 GLY A 936 LEU A 937 0 SHEET 2 AA1 6 ALA A1101 ASP A1104 -1 O PHE A1102 N GLY A 936 SHEET 3 AA1 6 ILE A1078 SER A1082 1 N ALA A1080 O LEU A1103 SHEET 4 AA1 6 TYR A1046 ASP A1050 1 N ILE A1047 O ILE A1079 SHEET 5 AA1 6 ARG A 987 VAL A 991 1 N LEU A 989 O PHE A1048 SHEET 6 AA1 6 GLU A1012 CYS A1016 1 O GLU A1012 N VAL A 988 LINK OD1 ASP A 993 MG MG A1201 1555 1555 2.10 LINK OD2 ASP A1050 MG MG A1201 1555 1555 2.18 LINK OD1 ASP A1050 BE BEF A1202 1555 1555 1.76 LINK O GLN A1052 MG MG A1201 1555 1555 2.14 LINK MG MG A1201 O HOH A1305 1555 1555 2.19 LINK MG MG A1201 O HOH A1309 1555 1555 2.20 SITE 1 AC1 6 ASP A 993 ASP A1050 GLN A1052 BEF A1202 SITE 2 AC1 6 HOH A1305 HOH A1309 SITE 1 AC2 10 ASP A1050 CYS A1051 GLN A1052 VAL A1081 SITE 2 AC2 10 SER A1082 GLY A1083 LYS A1105 MG A1201 SITE 3 AC2 10 HOH A1305 HOH A1309 CRYST1 52.850 100.152 80.139 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018921 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012478 0.00000