HEADER RNA BINDING PROTEIN 08-FEB-17 5N2V TITLE CHANGES IN CONFORMATIONAL EQUILIBRIA REGULATE THE ACTIVITY OF THE DCP2 TITLE 2 DECAPPING ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRNA-DECAPPING ENZYME SUBUNIT 1; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MRNA DECAPPING COMPLEX SUBUNIT 2; COMPND 7 CHAIN: B, E; COMPND 8 EC: 3.-.-.-; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: EDC1; COMPND 12 CHAIN: C, F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 GENE: DCP1, SPBC3B9.21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 10 ORGANISM_COMMON: FISSION YEAST; SOURCE 11 ORGANISM_TAXID: 4896; SOURCE 12 GENE: DCP2, SPAC19A8.12; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 18 ORGANISM_COMMON: FISSION YEAST; SOURCE 19 ORGANISM_TAXID: 4896 KEYWDS RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.HOLDERMANN,R.SPRANGERS REVDAT 5 28-FEB-24 5N2V 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 FORMUL LINK SITE ATOM REVDAT 4 17-JAN-24 5N2V 1 LINK REVDAT 3 14-JUN-17 5N2V 1 JRNL REVDAT 2 07-JUN-17 5N2V 1 JRNL REVDAT 1 24-MAY-17 5N2V 0 JRNL AUTH J.P.WURM,I.HOLDERMANN,J.H.OVERBECK,P.H.O.MAYER,R.SPRANGERS JRNL TITL CHANGES IN CONFORMATIONAL EQUILIBRIA REGULATE THE ACTIVITY JRNL TITL 2 OF THE DCP2 DECAPPING ENZYME. JRNL REF PROC. NATL. ACAD. SCI. V. 114 6034 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28533364 JRNL DOI 10.1073/PNAS.1704496114 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 15409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2947 - 5.6306 1.00 2490 146 0.2480 0.2723 REMARK 3 2 5.6306 - 4.4702 1.00 2441 121 0.2197 0.2451 REMARK 3 3 4.4702 - 3.9054 1.00 2415 147 0.2215 0.2617 REMARK 3 4 3.9054 - 3.5485 1.00 2426 119 0.2360 0.3124 REMARK 3 5 3.5485 - 3.2942 1.00 2426 143 0.2649 0.3407 REMARK 3 6 3.2942 - 3.1000 1.00 2409 126 0.2628 0.3361 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6336 REMARK 3 ANGLE : 0.487 8594 REMARK 3 CHIRALITY : 0.043 930 REMARK 3 PLANARITY : 0.003 1118 REMARK 3 DIHEDRAL : 14.869 3784 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15440 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.24000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5J3T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 41% M1K3350 MORPHEUS MIX 4, MOPS PH REMARK 280 7.0, 0.06 M MGCL2/CACL2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.26100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 LEU A 126 REMARK 465 ARG A 127 REMARK 465 MET B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 PHE B 207 REMARK 465 LYS B 208 REMARK 465 LYS B 209 REMARK 465 ASN B 210 REMARK 465 LYS B 211 REMARK 465 PRO B 212 REMARK 465 GLN B 213 REMARK 465 THR B 214 REMARK 465 MET B 215 REMARK 465 LYS B 216 REMARK 465 ASN B 217 REMARK 465 LYS B 218 REMARK 465 ASN B 237 REMARK 465 ILE B 238 REMARK 465 ALA B 239 REMARK 465 ASN B 240 REMARK 465 ASN B 241 REMARK 465 THR B 242 REMARK 465 THR B 243 REMARK 465 SER C 155 REMARK 465 HIS C 179 REMARK 465 SER C 180 REMARK 465 GLY D -1 REMARK 465 LEU D 126 REMARK 465 ARG D 127 REMARK 465 MET E -1 REMARK 465 GLY E 0 REMARK 465 MET E 1 REMARK 465 PHE E 207 REMARK 465 LYS E 208 REMARK 465 LYS E 209 REMARK 465 ASN E 210 REMARK 465 LYS E 211 REMARK 465 PRO E 212 REMARK 465 GLN E 213 REMARK 465 THR E 214 REMARK 465 MET E 215 REMARK 465 LYS E 216 REMARK 465 ASN E 217 REMARK 465 LYS E 218 REMARK 465 ASN E 237 REMARK 465 ILE E 238 REMARK 465 ALA E 239 REMARK 465 ASN E 240 REMARK 465 ASN E 241 REMARK 465 THR E 242 REMARK 465 THR E 243 REMARK 465 SER F 155 REMARK 465 HIS F 179 REMARK 465 SER F 180 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 49 22.76 -75.91 REMARK 500 ASP A 91 -120.87 60.43 REMARK 500 ASN A 100 50.61 -93.93 REMARK 500 VAL B 81 41.33 -99.58 REMARK 500 ASP B 133 -2.89 68.91 REMARK 500 ARG B 167 -130.49 56.88 REMARK 500 LYS B 191 -131.18 -149.71 REMARK 500 GLU B 192 -36.61 68.46 REMARK 500 SER D 49 23.58 -76.01 REMARK 500 ASP D 91 -121.40 60.81 REMARK 500 ASN D 100 51.38 -90.84 REMARK 500 VAL E 81 41.91 -100.06 REMARK 500 ASP E 133 -2.36 68.67 REMARK 500 ARG E 167 -130.82 57.39 REMARK 500 LYS E 191 -131.62 -149.16 REMARK 500 GLU E 192 -36.51 68.10 REMARK 500 PRO E 205 99.22 -66.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS B 127 O REMARK 620 2 GLU B 147 OE2 67.9 REMARK 620 3 M7G B 304 O2B 84.3 62.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 143 OE1 REMARK 620 2 GLU B 147 OE2 85.3 REMARK 620 3 GLU B 192 OE2 157.6 77.3 REMARK 620 4 M7G B 304 O2B 85.1 70.2 75.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 146 OE2 REMARK 620 2 M7G B 304 O2A 123.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS E 127 O REMARK 620 2 GLU E 147 OE2 77.2 REMARK 620 3 M7G E 304 O2B 94.5 122.6 REMARK 620 4 M7G E 304 O3B 97.8 71.9 52.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 143 OE1 REMARK 620 2 GLU E 147 OE2 74.9 REMARK 620 3 GLU E 192 OE2 140.9 66.9 REMARK 620 4 M7G E 304 O3B 80.0 67.1 77.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 M7G E 304 O1B REMARK 620 2 M7G E 304 O1A 84.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M7G B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG E 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG E 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG E 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M7G E 304 DBREF 5N2V A 1 127 UNP Q9P805 DCP1_SCHPO 1 127 DBREF 5N2V B 1 243 UNP O13828 DCP2_SCHPO 1 243 DBREF 5N2V C 155 180 UNP Q10108 YAQ9_SCHPO 155 180 DBREF 5N2V D 1 127 UNP Q9P805 DCP1_SCHPO 1 127 DBREF 5N2V E 1 243 UNP O13828 DCP2_SCHPO 1 243 DBREF 5N2V F 155 180 UNP Q10108 YAQ9_SCHPO 155 180 SEQADV 5N2V GLY A -1 UNP Q9P805 EXPRESSION TAG SEQADV 5N2V ALA A 0 UNP Q9P805 EXPRESSION TAG SEQADV 5N2V MET B -1 UNP O13828 INITIATING METHIONINE SEQADV 5N2V GLY B 0 UNP O13828 EXPRESSION TAG SEQADV 5N2V GLY D -1 UNP Q9P805 EXPRESSION TAG SEQADV 5N2V ALA D 0 UNP Q9P805 EXPRESSION TAG SEQADV 5N2V MET E -1 UNP O13828 INITIATING METHIONINE SEQADV 5N2V GLY E 0 UNP O13828 EXPRESSION TAG SEQRES 1 A 129 GLY ALA MET GLU ASP GLU ASN ILE LEU ARG ASN ALA VAL SEQRES 2 A 129 ASN LEU GLN VAL LEU LYS PHE HIS TYR PRO GLU ILE GLU SEQRES 3 A 129 SER ILE ILE ASP ILE ALA SER HIS VAL ALA VAL TYR GLN SEQRES 4 A 129 PHE ASP VAL GLY SER GLN LYS TRP LEU LYS THR SER ILE SEQRES 5 A 129 GLU GLY THR PHE PHE LEU VAL LYS ASP GLN ARG ALA ARG SEQRES 6 A 129 VAL GLY TYR VAL ILE LEU ASN ARG ASN SER PRO GLU ASN SEQRES 7 A 129 LEU TYR LEU PHE ILE ASN HIS PRO SER ASN VAL HIS LEU SEQRES 8 A 129 VAL ASP ARG TYR LEU ILE HIS ARG THR GLU ASN GLN HIS SEQRES 9 A 129 VAL VAL GLY LEU TRP MET PHE ASP PRO ASN ASP MET SER SEQRES 10 A 129 ARG ILE PHE ASN ILE VAL LYS GLU SER LEU LEU ARG SEQRES 1 B 245 MET GLY MET SER PHE THR ASN ALA THR PHE SER GLN VAL SEQRES 2 B 245 LEU ASP ASP LEU SER ALA ARG PHE ILE LEU ASN LEU PRO SEQRES 3 B 245 ALA GLU GLU GLN SER SER VAL GLU ARG LEU CYS PHE GLN SEQRES 4 B 245 ILE GLU GLN ALA HIS TRP PHE TYR GLU ASP PHE ILE ARG SEQRES 5 B 245 ALA GLN ASN ASP GLN LEU PRO SER LEU GLY LEU ARG VAL SEQRES 6 B 245 PHE SER ALA LYS LEU PHE ALA HIS CYS PRO LEU LEU TRP SEQRES 7 B 245 LYS TRP SER LYS VAL HIS GLU GLU ALA PHE ASP ASP PHE SEQRES 8 B 245 LEU ARG TYR LYS THR ARG ILE PRO VAL ARG GLY ALA ILE SEQRES 9 B 245 MET LEU ASP MET SER MET GLN GLN CYS VAL LEU VAL LYS SEQRES 10 B 245 GLY TRP LYS ALA SER SER GLY TRP GLY PHE PRO LYS GLY SEQRES 11 B 245 LYS ILE ASP LYS ASP GLU SER ASP VAL ASP CYS ALA ILE SEQRES 12 B 245 ARG GLU VAL TYR GLU GLU THR GLY PHE ASP CYS SER SER SEQRES 13 B 245 ARG ILE ASN PRO ASN GLU PHE ILE ASP MET THR ILE ARG SEQRES 14 B 245 GLY GLN ASN VAL ARG LEU TYR ILE ILE PRO GLY ILE SER SEQRES 15 B 245 LEU ASP THR ARG PHE GLU SER ARG THR ARG LYS GLU ILE SEQRES 16 B 245 SER LYS ILE GLU TRP HIS ASN LEU MET ASP LEU PRO THR SEQRES 17 B 245 PHE LYS LYS ASN LYS PRO GLN THR MET LYS ASN LYS PHE SEQRES 18 B 245 TYR MET VAL ILE PRO PHE LEU ALA PRO LEU LYS LYS TRP SEQRES 19 B 245 ILE LYS LYS ARG ASN ILE ALA ASN ASN THR THR SEQRES 1 C 26 SER ILE LEU TYR ALA GLY PRO THR PHE THR HIS SER PRO SEQRES 2 C 26 ALA ALA SER ASN LEU PRO ILE PRO THR PHE LEU HIS SER SEQRES 1 D 129 GLY ALA MET GLU ASP GLU ASN ILE LEU ARG ASN ALA VAL SEQRES 2 D 129 ASN LEU GLN VAL LEU LYS PHE HIS TYR PRO GLU ILE GLU SEQRES 3 D 129 SER ILE ILE ASP ILE ALA SER HIS VAL ALA VAL TYR GLN SEQRES 4 D 129 PHE ASP VAL GLY SER GLN LYS TRP LEU LYS THR SER ILE SEQRES 5 D 129 GLU GLY THR PHE PHE LEU VAL LYS ASP GLN ARG ALA ARG SEQRES 6 D 129 VAL GLY TYR VAL ILE LEU ASN ARG ASN SER PRO GLU ASN SEQRES 7 D 129 LEU TYR LEU PHE ILE ASN HIS PRO SER ASN VAL HIS LEU SEQRES 8 D 129 VAL ASP ARG TYR LEU ILE HIS ARG THR GLU ASN GLN HIS SEQRES 9 D 129 VAL VAL GLY LEU TRP MET PHE ASP PRO ASN ASP MET SER SEQRES 10 D 129 ARG ILE PHE ASN ILE VAL LYS GLU SER LEU LEU ARG SEQRES 1 E 245 MET GLY MET SER PHE THR ASN ALA THR PHE SER GLN VAL SEQRES 2 E 245 LEU ASP ASP LEU SER ALA ARG PHE ILE LEU ASN LEU PRO SEQRES 3 E 245 ALA GLU GLU GLN SER SER VAL GLU ARG LEU CYS PHE GLN SEQRES 4 E 245 ILE GLU GLN ALA HIS TRP PHE TYR GLU ASP PHE ILE ARG SEQRES 5 E 245 ALA GLN ASN ASP GLN LEU PRO SER LEU GLY LEU ARG VAL SEQRES 6 E 245 PHE SER ALA LYS LEU PHE ALA HIS CYS PRO LEU LEU TRP SEQRES 7 E 245 LYS TRP SER LYS VAL HIS GLU GLU ALA PHE ASP ASP PHE SEQRES 8 E 245 LEU ARG TYR LYS THR ARG ILE PRO VAL ARG GLY ALA ILE SEQRES 9 E 245 MET LEU ASP MET SER MET GLN GLN CYS VAL LEU VAL LYS SEQRES 10 E 245 GLY TRP LYS ALA SER SER GLY TRP GLY PHE PRO LYS GLY SEQRES 11 E 245 LYS ILE ASP LYS ASP GLU SER ASP VAL ASP CYS ALA ILE SEQRES 12 E 245 ARG GLU VAL TYR GLU GLU THR GLY PHE ASP CYS SER SER SEQRES 13 E 245 ARG ILE ASN PRO ASN GLU PHE ILE ASP MET THR ILE ARG SEQRES 14 E 245 GLY GLN ASN VAL ARG LEU TYR ILE ILE PRO GLY ILE SER SEQRES 15 E 245 LEU ASP THR ARG PHE GLU SER ARG THR ARG LYS GLU ILE SEQRES 16 E 245 SER LYS ILE GLU TRP HIS ASN LEU MET ASP LEU PRO THR SEQRES 17 E 245 PHE LYS LYS ASN LYS PRO GLN THR MET LYS ASN LYS PHE SEQRES 18 E 245 TYR MET VAL ILE PRO PHE LEU ALA PRO LEU LYS LYS TRP SEQRES 19 E 245 ILE LYS LYS ARG ASN ILE ALA ASN ASN THR THR SEQRES 1 F 26 SER ILE LEU TYR ALA GLY PRO THR PHE THR HIS SER PRO SEQRES 2 F 26 ALA ALA SER ASN LEU PRO ILE PRO THR PHE LEU HIS SER HET MG B 301 1 HET MG B 302 1 HET MG B 303 1 HET M7G B 304 29 HET MG E 301 1 HET MG E 302 1 HET MG E 303 1 HET M7G E 304 29 HETNAM MG MAGNESIUM ION HETNAM M7G 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE FORMUL 7 MG 6(MG 2+) FORMUL 10 M7G 2(C11 H19 N5 O11 P2) HELIX 1 AA1 ALA A 0 TYR A 20 1 21 HELIX 2 AA2 HIS A 83 SER A 85 5 3 HELIX 3 AA3 ASP A 110 LEU A 125 1 16 HELIX 4 AA4 THR B 7 ILE B 20 1 14 HELIX 5 AA5 PRO B 24 GLN B 28 5 5 HELIX 6 AA6 SER B 30 PHE B 48 1 19 HELIX 7 AA7 PHE B 48 ASN B 53 1 6 HELIX 8 AA8 GLY B 60 ALA B 70 1 11 HELIX 9 AA9 CYS B 72 SER B 79 5 8 HELIX 10 AB1 VAL B 81 THR B 94 1 14 HELIX 11 AB2 SER B 135 GLY B 149 1 15 HELIX 12 AB3 MET B 202 LEU B 204 5 3 HELIX 13 AB4 VAL B 222 ARG B 236 1 15 HELIX 14 AB5 ALA C 168 LEU C 172 5 5 HELIX 15 AB6 MET D 1 TYR D 20 1 20 HELIX 16 AB7 HIS D 83 SER D 85 5 3 HELIX 17 AB8 ASP D 110 LEU D 125 1 16 HELIX 18 AB9 THR E 7 ILE E 20 1 14 HELIX 19 AC1 PRO E 24 GLN E 28 5 5 HELIX 20 AC2 SER E 30 PHE E 48 1 19 HELIX 21 AC3 PHE E 48 ASN E 53 1 6 HELIX 22 AC4 GLY E 60 ALA E 70 1 11 HELIX 23 AC5 CYS E 72 SER E 79 5 8 HELIX 24 AC6 VAL E 81 THR E 94 1 14 HELIX 25 AC7 SER E 135 GLY E 149 1 15 HELIX 26 AC8 MET E 202 LEU E 204 5 3 HELIX 27 AC9 VAL E 222 ARG E 236 1 15 HELIX 28 AD1 ALA F 168 LEU F 172 5 5 SHEET 1 AA1 5 LYS A 44 LEU A 46 0 SHEET 2 AA1 5 ILE A 23 ASP A 39 -1 N GLN A 37 O LEU A 46 SHEET 3 AA1 5 GLU A 51 ASP A 59 -1 O LEU A 56 N ILE A 27 SHEET 4 AA1 5 VAL A 64 ASN A 70 -1 O VAL A 67 N PHE A 55 SHEET 5 AA1 5 LEU A 77 PHE A 80 -1 O LEU A 79 N TYR A 66 SHEET 1 AA2 5 LYS A 44 LEU A 46 0 SHEET 2 AA2 5 ILE A 23 ASP A 39 -1 N GLN A 37 O LEU A 46 SHEET 3 AA2 5 HIS A 102 MET A 108 -1 O TRP A 107 N ALA A 34 SHEET 4 AA2 5 TYR A 93 THR A 98 -1 N THR A 98 O HIS A 102 SHEET 5 AA2 5 VAL A 87 VAL A 90 -1 N HIS A 88 O ILE A 95 SHEET 1 AA3 4 LYS B 127 LYS B 129 0 SHEET 2 AA3 4 VAL B 98 ASP B 105 -1 N ARG B 99 O GLY B 128 SHEET 3 AA3 4 GLN B 169 ILE B 179 1 O ASN B 170 N VAL B 98 SHEET 4 AA3 4 PHE B 161 ILE B 166 -1 N MET B 164 O VAL B 171 SHEET 1 AA4 3 TRP B 123 GLY B 124 0 SHEET 2 AA4 3 GLN B 110 LYS B 115 -1 N VAL B 114 O GLY B 124 SHEET 3 AA4 3 LYS B 195 ASN B 200 -1 O GLU B 197 N LEU B 113 SHEET 1 AA5 5 LYS D 44 LEU D 46 0 SHEET 2 AA5 5 ILE D 23 ASP D 39 -1 N GLN D 37 O LEU D 46 SHEET 3 AA5 5 GLU D 51 ASP D 59 -1 O LEU D 56 N ILE D 27 SHEET 4 AA5 5 VAL D 64 ASN D 70 -1 O VAL D 67 N PHE D 55 SHEET 5 AA5 5 LEU D 77 PHE D 80 -1 O LEU D 79 N TYR D 66 SHEET 1 AA6 5 LYS D 44 LEU D 46 0 SHEET 2 AA6 5 ILE D 23 ASP D 39 -1 N GLN D 37 O LEU D 46 SHEET 3 AA6 5 HIS D 102 MET D 108 -1 O TRP D 107 N ALA D 34 SHEET 4 AA6 5 TYR D 93 THR D 98 -1 N HIS D 96 O VAL D 104 SHEET 5 AA6 5 VAL D 87 VAL D 90 -1 N HIS D 88 O ILE D 95 SHEET 1 AA7 4 LYS E 127 LYS E 129 0 SHEET 2 AA7 4 VAL E 98 ASP E 105 -1 N ARG E 99 O GLY E 128 SHEET 3 AA7 4 GLN E 169 ILE E 179 1 O ASN E 170 N VAL E 98 SHEET 4 AA7 4 PHE E 161 ILE E 166 -1 N MET E 164 O VAL E 171 SHEET 1 AA8 3 TRP E 123 GLY E 124 0 SHEET 2 AA8 3 GLN E 110 LYS E 115 -1 N VAL E 114 O GLY E 124 SHEET 3 AA8 3 LYS E 195 ASN E 200 -1 O GLU E 197 N LEU E 113 LINK O LYS B 127 MG MG B 303 1555 1555 2.24 LINK OE1 GLU B 143 MG MG B 302 1555 1555 2.15 LINK OE2 GLU B 146 MG MG B 301 1555 1555 2.66 LINK OE2 GLU B 147 MG MG B 302 1555 1555 2.40 LINK OE2 GLU B 147 MG MG B 303 1555 1555 2.43 LINK OE2 GLU B 192 MG MG B 302 1555 1555 2.07 LINK MG MG B 301 O2A M7G B 304 1555 1555 2.42 LINK MG MG B 302 O2B M7G B 304 1555 1555 2.03 LINK MG MG B 303 O2B M7G B 304 1555 1555 2.53 LINK O LYS E 127 MG MG E 301 1555 1555 2.08 LINK OE1 GLU E 143 MG MG E 302 1555 1555 2.36 LINK OE2 GLU E 147 MG MG E 301 1555 1555 2.13 LINK OE2 GLU E 147 MG MG E 302 1555 1555 2.86 LINK OE2 GLU E 192 MG MG E 302 1555 1555 1.98 LINK MG MG E 301 O2B M7G E 304 1555 1555 2.99 LINK MG MG E 301 O3B M7G E 304 1555 1555 2.58 LINK MG MG E 302 O3B M7G E 304 1555 1555 2.00 LINK MG MG E 303 O1B M7G E 304 1555 1555 2.71 LINK MG MG E 303 O1A M7G E 304 1555 1555 2.13 SITE 1 AC1 4 GLU B 143 GLU B 146 MG B 302 M7G B 304 SITE 1 AC2 6 GLU B 143 GLU B 146 GLU B 147 GLU B 192 SITE 2 AC2 6 MG B 301 M7G B 304 SITE 1 AC3 4 LYS B 127 GLU B 147 GLU B 192 M7G B 304 SITE 1 AC4 13 TRP B 43 ASP B 47 LYS B 127 GLY B 128 SITE 2 AC4 13 LYS B 129 GLU B 143 GLU B 147 ARG B 190 SITE 3 AC4 13 LYS B 191 GLU B 192 MG B 301 MG B 302 SITE 4 AC4 13 MG B 303 SITE 1 AC5 4 LYS E 127 GLU E 147 GLU E 192 M7G E 304 SITE 1 AC6 6 GLU E 143 GLU E 146 GLU E 147 GLU E 192 SITE 2 AC6 6 MG E 303 M7G E 304 SITE 1 AC7 4 GLU E 143 GLU E 146 MG E 302 M7G E 304 SITE 1 AC8 13 TRP E 43 ASP E 47 LYS E 127 GLY E 128 SITE 2 AC8 13 LYS E 129 GLU E 143 GLU E 147 ARG E 190 SITE 3 AC8 13 LYS E 191 GLU E 192 MG E 301 MG E 302 SITE 4 AC8 13 MG E 303 CRYST1 63.841 76.522 89.526 90.00 102.83 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015664 0.000000 0.003566 0.00000 SCALE2 0.000000 0.013068 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011456 0.00000