HEADER TRANSFERASE 08-FEB-17 5N32 TITLE CAMP-DEPENDENT PROTEIN KINASE A FROM CRICETULUS GRISEUS IN COMPLEX TITLE 2 WITH FRAGMENT LIKE MOLECULE 4-CHLOROBENZYL CARBAMIMIDOTHIOATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: PHOSPHORYLATION OF S11, T198 AND S339; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA-LIKE PROTEIN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 12-30; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: CAMP DEPENDENT PROTEIN KINASE INHIBITOR PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 3 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 4 ORGANISM_TAXID: 10029; SOURCE 5 GENE: PRKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-16BTEV; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 14 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 15 ORGANISM_TAXID: 10029 KEYWDS FRAGMENT, COMPLEX, TRANSFERASE, SERINE THREONINE KINASE, CAMP, KEYWDS 2 KINASE, PKA EXPDTA X-RAY DIFFRACTION AUTHOR C.SIEFKER,A.HEINE,G.KLEBE REVDAT 3 17-JAN-24 5N32 1 REMARK REVDAT 2 14-AUG-19 5N32 1 REMARK REVDAT 1 28-FEB-18 5N32 0 JRNL AUTH C.SIEFKER,A.HEINE,G.KLEBE JRNL TITL A CRYSTALLOGRAPHIC FRAGMENT STUDY WITH CAMP-DEPENDENT JRNL TITL 2 PROTEIN KINASE A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 41138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5617 - 4.5203 0.99 2775 147 0.1850 0.1922 REMARK 3 2 4.5203 - 3.5884 1.00 2672 140 0.1623 0.2116 REMARK 3 3 3.5884 - 3.1349 1.00 2637 139 0.1863 0.2028 REMARK 3 4 3.1349 - 2.8483 1.00 2628 138 0.1985 0.2322 REMARK 3 5 2.8483 - 2.6442 1.00 2607 137 0.1946 0.2128 REMARK 3 6 2.6442 - 2.4883 1.00 2613 138 0.1866 0.1900 REMARK 3 7 2.4883 - 2.3637 1.00 2584 136 0.1801 0.1893 REMARK 3 8 2.3637 - 2.2608 1.00 2581 136 0.1847 0.2222 REMARK 3 9 2.2608 - 2.1738 1.00 2582 136 0.1853 0.2138 REMARK 3 10 2.1738 - 2.0988 1.00 2584 136 0.1947 0.2389 REMARK 3 11 2.0988 - 2.0331 1.00 2592 136 0.2073 0.2518 REMARK 3 12 2.0331 - 1.9750 1.00 2570 135 0.2120 0.2479 REMARK 3 13 1.9750 - 1.9230 1.00 2567 136 0.2177 0.2723 REMARK 3 14 1.9230 - 1.8761 1.00 2582 135 0.2267 0.2487 REMARK 3 15 1.8761 - 1.8335 0.99 2507 132 0.2446 0.2876 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3056 REMARK 3 ANGLE : 0.687 4162 REMARK 3 CHIRALITY : 0.047 449 REMARK 3 PLANARITY : 0.004 551 REMARK 3 DIHEDRAL : 15.023 1814 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3176 7.9861 -1.8796 REMARK 3 T TENSOR REMARK 3 T11: 0.3277 T22: 0.4394 REMARK 3 T33: 0.2810 T12: -0.0990 REMARK 3 T13: 0.1025 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 0.2722 L22: 0.7435 REMARK 3 L33: 0.1746 L12: -0.3781 REMARK 3 L13: -0.0106 L23: -0.2279 REMARK 3 S TENSOR REMARK 3 S11: -0.1133 S12: -0.0728 S13: -0.1875 REMARK 3 S21: 0.0726 S22: 0.1853 S23: 0.0839 REMARK 3 S31: 0.0726 S32: 0.5598 S33: 0.0630 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8182 18.7319 -31.0737 REMARK 3 T TENSOR REMARK 3 T11: 0.2918 T22: 0.4288 REMARK 3 T33: 0.4034 T12: 0.0223 REMARK 3 T13: -0.1147 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 0.2138 L22: 1.3752 REMARK 3 L33: 0.1966 L12: -0.1230 REMARK 3 L13: 0.1852 L23: -0.4285 REMARK 3 S TENSOR REMARK 3 S11: 0.3320 S12: 0.6084 S13: -0.1644 REMARK 3 S21: -0.6038 S22: -0.2653 S23: 0.7250 REMARK 3 S31: 0.2351 S32: 0.0430 S33: 0.0276 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8693 22.0302 -18.3754 REMARK 3 T TENSOR REMARK 3 T11: 0.2031 T22: 0.2366 REMARK 3 T33: 0.2231 T12: -0.0386 REMARK 3 T13: -0.0129 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.6239 L22: 0.9597 REMARK 3 L33: 0.2689 L12: -0.6467 REMARK 3 L13: -0.1657 L23: -0.0640 REMARK 3 S TENSOR REMARK 3 S11: 0.0699 S12: 0.0406 S13: 0.0801 REMARK 3 S21: 0.0167 S22: -0.0807 S23: 0.2991 REMARK 3 S31: -0.0075 S32: -0.2089 S33: 0.0045 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2006 18.3426 -20.4907 REMARK 3 T TENSOR REMARK 3 T11: 0.1873 T22: 0.1567 REMARK 3 T33: 0.1723 T12: -0.0237 REMARK 3 T13: -0.0116 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.7723 L22: 1.2351 REMARK 3 L33: 0.6621 L12: 0.1651 REMARK 3 L13: 0.4176 L23: 0.1572 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: 0.0463 S13: -0.0062 REMARK 3 S21: -0.0144 S22: -0.0250 S23: -0.1223 REMARK 3 S31: 0.0304 S32: 0.0207 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 273 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6666 17.7980 -6.5153 REMARK 3 T TENSOR REMARK 3 T11: 0.2823 T22: 0.2459 REMARK 3 T33: 0.1738 T12: -0.0372 REMARK 3 T13: -0.0054 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.4239 L22: 0.7402 REMARK 3 L33: 0.4783 L12: 0.4923 REMARK 3 L13: 0.3721 L23: 0.2650 REMARK 3 S TENSOR REMARK 3 S11: 0.1228 S12: -0.2617 S13: 0.0205 REMARK 3 S21: 0.2246 S22: -0.0768 S23: -0.1211 REMARK 3 S31: 0.0851 S32: 0.0381 S33: -0.0031 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9076 23.4322 -34.3926 REMARK 3 T TENSOR REMARK 3 T11: 0.2158 T22: 0.4311 REMARK 3 T33: 0.3695 T12: 0.0973 REMARK 3 T13: -0.3195 T23: -0.0560 REMARK 3 L TENSOR REMARK 3 L11: 0.8280 L22: 0.5169 REMARK 3 L33: 1.3251 L12: -0.1418 REMARK 3 L13: -0.6379 L23: -0.0470 REMARK 3 S TENSOR REMARK 3 S11: 0.4445 S12: 0.6526 S13: 0.0182 REMARK 3 S21: -0.5745 S22: -0.0275 S23: 0.2585 REMARK 3 S31: -0.2791 S32: 0.2085 S33: 1.7055 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9929 28.1708 -29.6034 REMARK 3 T TENSOR REMARK 3 T11: 0.2503 T22: 0.1955 REMARK 3 T33: 0.2916 T12: -0.0075 REMARK 3 T13: -0.0174 T23: 0.0441 REMARK 3 L TENSOR REMARK 3 L11: 0.0194 L22: 0.0362 REMARK 3 L33: 0.0265 L12: -0.0256 REMARK 3 L13: 0.0157 L23: -0.0308 REMARK 3 S TENSOR REMARK 3 S11: 0.1488 S12: 0.2249 S13: 0.3650 REMARK 3 S21: -0.1905 S22: -0.0626 S23: -0.1831 REMARK 3 S31: 0.0100 S32: -0.0229 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6489 13.3174 -35.3351 REMARK 3 T TENSOR REMARK 3 T11: 0.5879 T22: 0.4553 REMARK 3 T33: 0.3444 T12: -0.0506 REMARK 3 T13: -0.0214 T23: -0.0536 REMARK 3 L TENSOR REMARK 3 L11: 0.0859 L22: 0.1627 REMARK 3 L33: 0.0692 L12: 0.0196 REMARK 3 L13: 0.0073 L23: 0.1061 REMARK 3 S TENSOR REMARK 3 S11: 0.0428 S12: 0.1483 S13: 0.1530 REMARK 3 S21: -0.2451 S22: -0.0683 S23: -0.0203 REMARK 3 S31: -0.0033 S32: 0.2266 S33: -0.0087 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N32 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003257. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : SILICON, ACTIVE SURFACE REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41140 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.540 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.31 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WIH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES-BIS-TRIS MEGA8-SOLUTION DTT EDTA REMARK 280 LICL METHANOL, PH 6.9, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.31750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.26550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.16350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.26550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.31750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.16350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ASN A 2 REMARK 465 SER A 34 REMARK 465 GLN A 35 REMARK 465 GLY A 55 REMARK 465 ILE B 11 REMARK 465 ALA B 28 REMARK 465 ALA B 29 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 8 CD CE NZ REMARK 470 LYS A 16 CD CE NZ REMARK 470 LYS A 21 CD CE NZ REMARK 470 LYS A 23 CE NZ REMARK 470 LYS A 28 CD CE NZ REMARK 470 LYS A 29 NZ REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 SER A 32 OG REMARK 470 ASN A 36 CG OD1 ND2 REMARK 470 THR A 37 OG1 CG2 REMARK 470 SER A 53 OG REMARK 470 PHE A 54 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 61 CE NZ REMARK 470 LYS A 63 NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 LYS A 81 CD CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 GLN A 84 CG CD OE1 NE2 REMARK 470 ILE A 85 CG2 CD1 REMARK 470 LYS A 92 NZ REMARK 470 ARG A 93 NH1 NH2 REMARK 470 PHE A 108 CE1 CZ REMARK 470 LYS A 192 CD CE NZ REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 ARG A 256 NE CZ NH1 NH2 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 PHE A 318 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 ARG A 336 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 339 CG1 CG2 CD1 REMARK 470 LYS A 342 CG CD CE NZ REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 GLU A 346 OE1 OE2 REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 470 GLN B 20 CG CD OE1 NE2 REMARK 470 VAL B 27 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLY A 322 O HOH A 502 1.52 REMARK 500 HE ARG A 308 O HOH A 503 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 38 -177.49 -176.39 REMARK 500 ILE A 46 -62.09 -108.00 REMARK 500 VAL A 79 35.36 -75.29 REMARK 500 VAL A 80 98.76 -164.08 REMARK 500 LYS A 81 -12.16 77.44 REMARK 500 LEU A 82 -108.94 46.69 REMARK 500 LYS A 83 -28.75 -33.05 REMARK 500 ASP A 166 41.83 -149.97 REMARK 500 ASP A 184 89.82 68.32 REMARK 500 ASP B 24 -16.92 -158.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8K5 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8K5 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 403 DBREF 5N32 A 0 350 UNP P25321 KAPCA_CRIGR 1 351 DBREF1 5N32 B 11 29 UNP A0A061IH64_CRIGR DBREF2 5N32 B A0A061IH64 12 30 SEQADV 5N32 GLY A -2 UNP P25321 EXPRESSION TAG SEQADV 5N32 HIS A -1 UNP P25321 EXPRESSION TAG SEQADV 5N32 ALA B 13 UNP A0A061IH6 SER 14 CONFLICT SEQADV 5N32 GLN B 20 UNP A0A061IH6 ASN 21 CONFLICT SEQADV 5N32 ALA B 28 UNP A0A061IH6 SER 29 CONFLICT SEQADV 5N32 ALA B 29 UNP A0A061IH6 SER 30 CONFLICT SEQRES 1 A 353 GLY HIS MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SEP SEQRES 2 A 353 GLU GLN GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS SEQRES 3 A 353 GLU GLU PHE LEU LYS LYS TRP GLU SER PRO SER GLN ASN SEQRES 4 A 353 THR ALA GLN LEU ASP HIS PHE ASP ARG ILE LYS THR LEU SEQRES 5 A 353 GLY THR GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS SEQRES 6 A 353 LYS GLU THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP SEQRES 7 A 353 LYS GLN LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR SEQRES 8 A 353 LEU ASN GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO SEQRES 9 A 353 PHE LEU VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER SEQRES 10 A 353 ASN LEU TYR MET VAL MET GLU TYR VAL PRO GLY GLY GLU SEQRES 11 A 353 MET PHE SER HIS LEU ARG ARG ILE GLY ARG PHE SER GLU SEQRES 12 A 353 PRO HIS ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR SEQRES 13 A 353 PHE GLU TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP SEQRES 14 A 353 LEU LYS PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR SEQRES 15 A 353 ILE GLN VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS SEQRES 16 A 353 GLY ARG THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU SEQRES 17 A 353 ALA PRO GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA SEQRES 18 A 353 VAL ASP TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET SEQRES 19 A 353 ALA ALA GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE SEQRES 20 A 353 GLN ILE TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE SEQRES 21 A 353 PRO SER HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG SEQRES 22 A 353 ASN LEU LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN SEQRES 23 A 353 LEU LYS ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP SEQRES 24 A 353 PHE ALA THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS SEQRES 25 A 353 VAL GLU ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY SEQRES 26 A 353 ASP THR SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE SEQRES 27 A 353 ARG VAL SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE THR SEQRES 28 A 353 GLU PHE SEQRES 1 B 19 ILE ALA ALA GLY ARG THR GLY ARG ARG GLN ALA ILE HIS SEQRES 2 B 19 ASP ILE LEU VAL ALA ALA MODRES 5N32 SEP A 10 SER MODIFIED RESIDUE MODRES 5N32 TPO A 197 THR MODIFIED RESIDUE MODRES 5N32 SEP A 338 SER MODIFIED RESIDUE HET SEP A 10 14 HET TPO A 197 17 HET SEP A 338 14 HET 8K5 A 401 22 HET 8K5 A 402 22 HET MPD A 403 22 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM 8K5 [AZANYL-[(4-CHLOROPHENYL) HETNAM 2 8K5 METHYLSULFANYL]METHYLIDENE]AZANIUM HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 8K5 2(C8 H10 CL N2 S 1+) FORMUL 5 MPD C6 H14 O2 FORMUL 6 HOH *157(H2 O) HELIX 1 AA1 ALA A 4 GLU A 31 1 28 HELIX 2 AA2 GLN A 39 ASP A 41 5 3 HELIX 3 AA3 LYS A 83 GLN A 96 1 14 HELIX 4 AA4 GLU A 127 GLY A 136 1 10 HELIX 5 AA5 SER A 139 LEU A 160 1 22 HELIX 6 AA6 LYS A 168 GLU A 170 5 3 HELIX 7 AA7 THR A 201 LEU A 205 5 5 HELIX 8 AA8 ALA A 206 LEU A 211 1 6 HELIX 9 AA9 LYS A 217 GLY A 234 1 18 HELIX 10 AB1 GLN A 242 GLY A 253 1 12 HELIX 11 AB2 SER A 262 LEU A 273 1 12 HELIX 12 AB3 VAL A 288 ASN A 293 1 6 HELIX 13 AB4 HIS A 294 ALA A 298 5 5 HELIX 14 AB5 ASP A 301 GLN A 307 1 7 HELIX 15 AB6 GLY A 344 THR A 348 5 5 SHEET 1 AA1 5 PHE A 43 GLY A 50 0 SHEET 2 AA1 5 VAL A 57 HIS A 62 -1 O LEU A 59 N LYS A 47 SHEET 3 AA1 5 HIS A 68 ASP A 75 -1 O MET A 71 N MET A 58 SHEET 4 AA1 5 ASN A 115 GLU A 121 -1 O MET A 120 N ALA A 70 SHEET 5 AA1 5 LEU A 106 LYS A 111 -1 N GLU A 107 O VAL A 119 SHEET 1 AA2 2 LEU A 162 ILE A 163 0 SHEET 2 AA2 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AA3 2 LEU A 172 ILE A 174 0 SHEET 2 AA3 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 LINK C GLY A 9 N SEP A 10 1555 1555 1.33 LINK C SEP A 10 N GLU A 11 1555 1555 1.33 LINK C TRP A 196 N TPO A 197 1555 1555 1.33 LINK C TPO A 197 N LEU A 198 1555 1555 1.33 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 CISPEP 1 VAL A 80 LYS A 81 0 -15.94 SITE 1 AC1 9 LEU A 49 ALA A 70 GLU A 121 GLU A 127 SITE 2 AC1 9 GLU A 170 ASN A 171 LEU A 173 THR A 183 SITE 3 AC1 9 PHE A 327 SITE 1 AC2 8 LEU A 82 LYS A 83 ILE A 135 GLY A 136 SITE 2 AC2 8 ARG A 137 TPO A 197 HOH A 518 ASP B 24 SITE 1 AC3 5 VAL A 15 PHE A 100 LEU A 152 GLU A 155 SITE 2 AC3 5 TYR A 306 CRYST1 58.635 72.327 108.531 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017055 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013826 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009214 0.00000