HEADER TRANSFERASE 08-FEB-17 5N3F TITLE CAMP-DEPENDENT PROTEIN KINASE A FROM CRICETULUS GRISEUS IN COMPLEX TITLE 2 WITH FRAGMENT LIKE MOLECULE N-[3-(AMINOMETHYL)PHENYL]ACETAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: PHOSPHORYLATION OF S11, S140 AND T198; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CAMP DEPENDENT PROTEIN KINASE INHIBITOR ALPHA-LIKE PROTEIN; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: CAMP DEPENDENT PROTEIN KINASE INHIBITOR PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 3 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 4 ORGANISM_TAXID: 10029; SOURCE 5 GENE: PRKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-16BTEV; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 13 ORGANISM_TAXID: 10029 KEYWDS FRAGMENT, COMPLEX, TRANSFERASE, SERINE THREONINE KINASE, CAMP, KEYWDS 2 KINASE, PKA EXPDTA X-RAY DIFFRACTION AUTHOR C.SIEFKER,A.HEINE,G.KLEBE REVDAT 3 17-JAN-24 5N3F 1 REMARK REVDAT 2 14-AUG-19 5N3F 1 REMARK REVDAT 1 28-FEB-18 5N3F 0 JRNL AUTH C.SIEFKER,A.HEINE,G.KLEBE JRNL TITL A CRYSTALLOGRAPHIC FRAGMENT STUDY WITH CAMP-DEPENDENT JRNL TITL 2 PROTEIN KINASE A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 53003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5918 - 4.4928 0.99 2832 150 0.2030 0.1977 REMARK 3 2 4.4928 - 3.5665 1.00 2731 144 0.1632 0.1659 REMARK 3 3 3.5665 - 3.1158 1.00 2674 140 0.1717 0.2124 REMARK 3 4 3.1158 - 2.8310 1.00 2691 142 0.1737 0.1967 REMARK 3 5 2.8310 - 2.6281 1.00 2671 141 0.1712 0.1773 REMARK 3 6 2.6281 - 2.4732 1.00 2634 138 0.1624 0.1699 REMARK 3 7 2.4732 - 2.3493 1.00 2664 140 0.1595 0.1723 REMARK 3 8 2.3493 - 2.2470 1.00 2645 140 0.1509 0.1796 REMARK 3 9 2.2470 - 2.1605 1.00 2632 138 0.1498 0.1929 REMARK 3 10 2.1605 - 2.0860 1.00 2642 139 0.1477 0.1838 REMARK 3 11 2.0860 - 2.0208 1.00 2610 138 0.1567 0.1920 REMARK 3 12 2.0208 - 1.9630 1.00 2639 139 0.1638 0.2056 REMARK 3 13 1.9630 - 1.9113 1.00 2635 138 0.1608 0.2266 REMARK 3 14 1.9113 - 1.8647 1.00 2615 138 0.1639 0.2125 REMARK 3 15 1.8647 - 1.8223 1.00 2636 139 0.1779 0.2363 REMARK 3 16 1.8223 - 1.7835 1.00 2601 136 0.1783 0.2258 REMARK 3 17 1.7835 - 1.7478 1.00 2636 139 0.1908 0.2135 REMARK 3 18 1.7478 - 1.7149 1.00 2610 138 0.2109 0.2432 REMARK 3 19 1.7149 - 1.6842 0.99 2554 134 0.2483 0.2854 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 2766 REMARK 3 ANGLE : 1.355 3757 REMARK 3 CHIRALITY : 0.105 403 REMARK 3 PLANARITY : 0.010 492 REMARK 3 DIHEDRAL : 13.889 1621 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2731 5.9305 -4.7666 REMARK 3 T TENSOR REMARK 3 T11: 0.2302 T22: 0.1781 REMARK 3 T33: 0.2444 T12: -0.1306 REMARK 3 T13: 0.1439 T23: -0.0462 REMARK 3 L TENSOR REMARK 3 L11: 1.9609 L22: 1.5925 REMARK 3 L33: 1.2768 L12: -0.5958 REMARK 3 L13: -0.6752 L23: 0.3144 REMARK 3 S TENSOR REMARK 3 S11: -0.4137 S12: -0.1698 S13: -0.3121 REMARK 3 S21: 0.1412 S22: 0.3116 S23: 0.3005 REMARK 3 S31: 0.4498 S32: 0.0174 S33: 0.1794 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.6622 24.2521 -30.0806 REMARK 3 T TENSOR REMARK 3 T11: 0.2374 T22: 0.5073 REMARK 3 T33: 0.5889 T12: -0.0684 REMARK 3 T13: -0.1685 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.4490 L22: 0.4997 REMARK 3 L33: 0.2644 L12: 0.0151 REMARK 3 L13: -0.2842 L23: 0.1909 REMARK 3 S TENSOR REMARK 3 S11: 0.1408 S12: 0.6689 S13: 0.0140 REMARK 3 S21: -0.5042 S22: 0.0614 S23: 0.8398 REMARK 3 S31: 0.0498 S32: -0.3568 S33: 0.3263 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5014 13.4002 -30.5136 REMARK 3 T TENSOR REMARK 3 T11: 0.3677 T22: 0.4117 REMARK 3 T33: 0.2939 T12: -0.0109 REMARK 3 T13: -0.1163 T23: -0.0764 REMARK 3 L TENSOR REMARK 3 L11: 2.1952 L22: 4.2633 REMARK 3 L33: 0.7291 L12: -2.3132 REMARK 3 L13: 0.3073 L23: -0.8778 REMARK 3 S TENSOR REMARK 3 S11: 0.5056 S12: 0.7551 S13: -0.0981 REMARK 3 S21: -1.1847 S22: -0.4560 S23: 0.3733 REMARK 3 S31: 0.3241 S32: 0.0076 S33: 0.0699 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2018 22.5556 -17.9465 REMARK 3 T TENSOR REMARK 3 T11: 0.1743 T22: 0.2141 REMARK 3 T33: 0.1745 T12: -0.0281 REMARK 3 T13: -0.0124 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.4966 L22: 1.4146 REMARK 3 L33: 0.5241 L12: -0.2803 REMARK 3 L13: -0.3349 L23: -0.5447 REMARK 3 S TENSOR REMARK 3 S11: -0.0043 S12: 0.1062 S13: 0.0920 REMARK 3 S21: -0.0865 S22: -0.0089 S23: 0.2735 REMARK 3 S31: 0.0028 S32: -0.2453 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7953 17.4288 -18.1219 REMARK 3 T TENSOR REMARK 3 T11: 0.1186 T22: 0.1191 REMARK 3 T33: 0.1287 T12: -0.0198 REMARK 3 T13: -0.0053 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.8696 L22: 1.6965 REMARK 3 L33: 1.3878 L12: 0.0608 REMARK 3 L13: 0.1712 L23: 0.2972 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: 0.0627 S13: -0.0175 REMARK 3 S21: 0.0307 S22: -0.0134 S23: -0.1198 REMARK 3 S31: 0.0451 S32: 0.0536 S33: -0.0047 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1789 29.7015 -13.6824 REMARK 3 T TENSOR REMARK 3 T11: 0.2192 T22: 0.2534 REMARK 3 T33: 0.2481 T12: -0.0211 REMARK 3 T13: 0.0258 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.3846 L22: 0.6058 REMARK 3 L33: 0.4246 L12: 0.0681 REMARK 3 L13: 0.2044 L23: -0.0998 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: 0.1026 S13: 0.1733 REMARK 3 S21: 0.0917 S22: 0.0865 S23: 0.3119 REMARK 3 S31: -0.1034 S32: -0.2264 S33: 0.0378 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1237 22.9757 -31.4084 REMARK 3 T TENSOR REMARK 3 T11: 0.3947 T22: 0.2324 REMARK 3 T33: 0.1450 T12: 0.0136 REMARK 3 T13: -0.0505 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 2.3784 L22: 0.7814 REMARK 3 L33: 0.3471 L12: -0.0357 REMARK 3 L13: -0.5858 L23: 0.3837 REMARK 3 S TENSOR REMARK 3 S11: 0.2319 S12: 0.2853 S13: 0.2555 REMARK 3 S21: -0.4617 S22: -0.0982 S23: 0.0193 REMARK 3 S31: 0.4640 S32: -0.0444 S33: 0.2163 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N3F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : SILICON, ACTIVE SURFACE REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53011 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.610 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.41 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WIH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES-BIS-TRIS MEGA8-SOLUTION DTT EDTA REMARK 280 LICL METHANOL, PH 6.9, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.38250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.38000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.09700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.38000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.38250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.09700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 SER A 34 REMARK 465 GLN A 35 REMARK 465 ASN A 36 REMARK 465 PHE A 54 REMARK 465 GLY A 55 REMARK 465 LYS A 83 REMARK 465 GLU A 334 REMARK 465 ILE A 335 REMARK 465 ARG A 336 REMARK 465 VAL A 337 REMARK 465 SEP A 338 REMARK 465 ILE A 339 REMARK 465 ASN A 340 REMARK 465 GLU A 341 REMARK 465 LYS A 342 REMARK 465 CYS A 343 REMARK 465 GLY A 344 REMARK 465 LYS A 345 REMARK 465 GLU A 346 REMARK 465 PHE A 347 REMARK 465 THR A 348 REMARK 465 GLU A 349 REMARK 465 PHE A 350 REMARK 465 ILE B 11 REMARK 465 ALA B 12 REMARK 465 ALA B 13 REMARK 465 LEU B 26 REMARK 465 VAL B 27 REMARK 465 ALA B 28 REMARK 465 ALA B 29 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CE NZ REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 LYS A 16 CE NZ REMARK 470 LYS A 23 CE NZ REMARK 470 GLU A 25 CD OE1 OE2 REMARK 470 LYS A 28 CD CE NZ REMARK 470 LYS A 29 CE NZ REMARK 470 GLU A 31 CD OE1 OE2 REMARK 470 SER A 32 OG REMARK 470 THR A 37 OG1 CG2 REMARK 470 ASP A 41 OD2 REMARK 470 ARG A 45 CD NE CZ NH1 NH2 REMARK 470 SER A 53 OG REMARK 470 LYS A 61 CE NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 76 NZ REMARK 470 GLN A 77 CG CD OE1 NE2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 VAL A 79 CG1 CG2 REMARK 470 VAL A 80 CG1 CG2 REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LEU A 82 CG CD1 CD2 REMARK 470 GLN A 84 CG CD OE1 NE2 REMARK 470 ILE A 85 CD1 REMARK 470 LYS A 92 CE NZ REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 LYS A 111 CD CE NZ REMARK 470 ASN A 113 OD1 ND2 REMARK 470 SER A 114 OG REMARK 470 ILE A 135 CD1 REMARK 470 GLN A 176 CD OE1 NE2 REMARK 470 LYS A 192 CD CE NZ REMARK 470 GLU A 248 CD OE1 OE2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 ARG A 256 CZ NH1 NH2 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 LYS A 295 CD CE NZ REMARK 470 ILE A 315 CD1 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 PHE A 318 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 PRO A 321 CG CD REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 GLN B 20 CD OE1 NE2 REMARK 470 ILE B 22 CD1 REMARK 470 HIS B 23 CG ND1 CD2 CE1 NE2 REMARK 470 ILE B 25 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 134 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 308 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 38 -173.72 -173.52 REMARK 500 VAL A 79 72.94 -67.32 REMARK 500 ASP A 166 42.53 -149.50 REMARK 500 ASP A 184 81.93 68.83 REMARK 500 ASP A 184 81.93 55.46 REMARK 500 LEU A 273 48.72 -87.24 REMARK 500 ASP B 24 -152.77 -134.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 463 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 463 A 404 DBREF 5N3F A 0 350 UNP P25321 KAPCA_CRIGR 1 351 DBREF 5N3F B 11 29 PDB 5N3F 5N3F 11 29 SEQADV 5N3F GLY A -2 UNP P25321 EXPRESSION TAG SEQADV 5N3F HIS A -1 UNP P25321 EXPRESSION TAG SEQRES 1 A 353 GLY HIS MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SEP SEQRES 2 A 353 GLU GLN GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS SEQRES 3 A 353 GLU GLU PHE LEU LYS LYS TRP GLU SER PRO SER GLN ASN SEQRES 4 A 353 THR ALA GLN LEU ASP HIS PHE ASP ARG ILE LYS THR LEU SEQRES 5 A 353 GLY THR GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS SEQRES 6 A 353 LYS GLU THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP SEQRES 7 A 353 LYS GLN LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR SEQRES 8 A 353 LEU ASN GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO SEQRES 9 A 353 PHE LEU VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER SEQRES 10 A 353 ASN LEU TYR MET VAL MET GLU TYR VAL PRO GLY GLY GLU SEQRES 11 A 353 MET PHE SER HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU SEQRES 12 A 353 PRO HIS ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR SEQRES 13 A 353 PHE GLU TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP SEQRES 14 A 353 LEU LYS PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR SEQRES 15 A 353 ILE GLN VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS SEQRES 16 A 353 GLY ARG THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU SEQRES 17 A 353 ALA PRO GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA SEQRES 18 A 353 VAL ASP TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET SEQRES 19 A 353 ALA ALA GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE SEQRES 20 A 353 GLN ILE TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE SEQRES 21 A 353 PRO SER HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG SEQRES 22 A 353 ASN LEU LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN SEQRES 23 A 353 LEU LYS ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP SEQRES 24 A 353 PHE ALA THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS SEQRES 25 A 353 VAL GLU ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY SEQRES 26 A 353 ASP THR SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE SEQRES 27 A 353 ARG VAL SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE THR SEQRES 28 A 353 GLU PHE SEQRES 1 B 19 ILE ALA ALA GLY ARG THR GLY ARG ARG GLN ALA ILE HIS SEQRES 2 B 19 ASP ILE LEU VAL ALA ALA MODRES 5N3F SEP A 10 SER MODIFIED RESIDUE MODRES 5N3F SEP A 139 SER MODIFIED RESIDUE MODRES 5N3F TPO A 197 THR MODIFIED RESIDUE HET SEP A 10 10 HET SEP A 139 10 HET TPO A 197 11 HET MPD A 401 8 HET MPD A 402 8 HET 463 A 403 12 HET 463 A 404 12 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM 463 N-[3-(AMINOMETHYL)PHENYL]ACETAMIDE HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 MPD 2(C6 H14 O2) FORMUL 5 463 2(C9 H12 N2 O) FORMUL 7 HOH *240(H2 O) HELIX 1 AA1 LYS A 7 SER A 32 1 26 HELIX 2 AA2 GLN A 39 ASP A 41 5 3 HELIX 3 AA3 LYS A 81 LEU A 82 5 2 HELIX 4 AA4 GLN A 84 GLN A 84 5 1 HELIX 5 AA5 ILE A 85 VAL A 98 1 14 HELIX 6 AA6 GLU A 127 GLY A 136 1 10 HELIX 7 AA7 SEP A 139 LEU A 160 1 22 HELIX 8 AA8 LYS A 168 GLU A 170 5 3 HELIX 9 AA9 THR A 201 LEU A 205 5 5 HELIX 10 AB1 ALA A 206 LEU A 211 1 6 HELIX 11 AB2 LYS A 217 GLY A 234 1 18 HELIX 12 AB3 GLN A 242 GLY A 253 1 12 HELIX 13 AB4 SER A 262 LEU A 273 1 12 HELIX 14 AB5 VAL A 288 ASN A 293 1 6 HELIX 15 AB6 HIS A 294 ALA A 298 5 5 HELIX 16 AB7 ASP A 301 GLN A 307 1 7 SHEET 1 AA1 5 PHE A 43 GLY A 50 0 SHEET 2 AA1 5 VAL A 57 HIS A 62 -1 O LEU A 59 N LYS A 47 SHEET 3 AA1 5 HIS A 68 ASP A 75 -1 O MET A 71 N MET A 58 SHEET 4 AA1 5 ASN A 115 GLU A 121 -1 O MET A 118 N LYS A 72 SHEET 5 AA1 5 LEU A 106 LYS A 111 -1 N GLU A 107 O VAL A 119 SHEET 1 AA2 2 LEU A 162 ILE A 163 0 SHEET 2 AA2 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AA3 2 LEU A 172 ILE A 174 0 SHEET 2 AA3 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 LINK C GLY A 9 N SEP A 10 1555 1555 1.33 LINK C SEP A 10 N GLU A 11 1555 1555 1.33 LINK C PHE A 138 N SEP A 139 1555 1555 1.35 LINK C SEP A 139 N GLU A 140 1555 1555 1.34 LINK C TRP A 196 N TPO A 197 1555 1555 1.33 LINK C TPO A 197 N LEU A 198 1555 1555 1.33 SITE 1 AC1 6 PHE A 18 LEU A 152 GLU A 155 TYR A 306 SITE 2 AC1 6 HOH A 616 HOH A 624 SITE 1 AC2 6 LEU A 277 ASN A 283 ASP A 329 TYR A 330 SITE 2 AC2 6 HOH A 593 HOH A 653 SITE 1 AC3 10 LEU A 49 ALA A 70 MET A 120 GLU A 127 SITE 2 AC3 10 GLU A 170 ASN A 171 LEU A 173 THR A 183 SITE 3 AC3 10 HOH A 501 HOH A 639 SITE 1 AC4 10 GLU A 17 LYS A 21 GLU A 140 SER A 259 SITE 2 AC4 10 HIS A 260 PHE A 261 SER A 262 HOH A 512 SITE 3 AC4 10 HOH A 629 HOH A 668 CRYST1 58.765 72.194 108.760 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017017 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013852 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009195 0.00000