HEADER TRANSFERASE 10-FEB-17 5N4I TITLE CRYSTAL STRUCTURE OF OPHA-DELTAC6 MUTANT W400A IN COMPLEX WITH SAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OMPHALOTUS OLEARIUS; SOURCE 3 ORGANISM_TAXID: 72120; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.SONG,J.H.NAISMITH REVDAT 4 06-NOV-24 5N4I 1 REMARK REVDAT 3 17-JAN-24 5N4I 1 LINK REVDAT 2 19-SEP-18 5N4I 1 JRNL REVDAT 1 28-FEB-18 5N4I 0 JRNL AUTH H.SONG,N.S.VAN DER VELDEN,S.L.SHIRAN,P.BLEIZIFFER,C.ZACH, JRNL AUTH 2 R.SIEBER,A.S.IMANI,F.KRAUSBECK,M.AEBI,M.F.FREEMAN,S.RINIKER, JRNL AUTH 3 M.KUNZLER,J.H.NAISMITH JRNL TITL A MOLECULAR MECHANISM FOR THE ENZYMATIC METHYLATION OF JRNL TITL 2 NITROGEN ATOMS WITHIN PEPTIDE BONDS. JRNL REF SCI ADV V. 4 T2720 2018 JRNL REFN ESSN 2375-2548 JRNL PMID 30151425 JRNL DOI 10.1126/SCIADV.AAT2720 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 79834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4159 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5585 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.4080 REMARK 3 BIN FREE R VALUE SET COUNT : 293 REMARK 3 BIN FREE R VALUE : 0.4630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3042 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 235 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.32000 REMARK 3 B22 (A**2) : -0.54000 REMARK 3 B33 (A**2) : 1.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.699 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3280 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3013 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4471 ; 1.329 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7012 ; 0.930 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 415 ; 6.170 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;35.479 ;24.028 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 524 ;12.725 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.704 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 494 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3709 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 648 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1642 ; 1.969 ; 3.162 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1638 ; 1.938 ; 3.157 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2065 ; 2.421 ; 4.722 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2066 ; 2.421 ; 4.721 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1637 ; 1.972 ; 3.414 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1635 ; 1.971 ; 3.408 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2406 ; 2.301 ; 5.022 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3630 ; 3.405 ;38.692 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3579 ; 3.168 ;38.135 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6290 ; 1.011 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 140 ;30.381 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6310 ; 7.767 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 502 REMARK 3 ORIGIN FOR THE GROUP (A): -85.4731 184.4570 27.4105 REMARK 3 T TENSOR REMARK 3 T11: 0.0817 T22: 0.0154 REMARK 3 T33: 0.0196 T12: -0.0115 REMARK 3 T13: -0.0010 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.3190 L22: 1.1826 REMARK 3 L33: 0.3031 L12: -0.1322 REMARK 3 L13: 0.0000 L23: -0.0977 REMARK 3 S TENSOR REMARK 3 S11: -0.0666 S12: -0.0067 S13: 0.0290 REMARK 3 S21: -0.1778 S22: 0.1212 S23: -0.0468 REMARK 3 S31: -0.0084 S32: -0.0142 S33: -0.0546 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5N4I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003517. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85158 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 75.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 1.54500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5N0O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3-0.4 M KSCN, 0.1 M BICINE PH 9.0, REMARK 280 1.7-1.9 M SODIUM MALONATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.94250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.97550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.09050 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.94250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.97550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.09050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.94250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.97550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.09050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.94250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 45.97550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.09050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -171.77000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 367.80400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O2 GOL A 502 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 GLN A 6 REMARK 465 SER A 389 REMARK 465 GLY A 390 REMARK 465 GLU A 391 REMARK 465 GLU A 392 REMARK 465 ALA A 393 REMARK 465 SER A 394 REMARK 465 GLN A 395 REMARK 465 ASN A 396 REMARK 465 GLY A 408 REMARK 465 VAL A 409 REMARK 465 ILE A 410 REMARK 465 GLY A 411 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 22 -58.89 68.49 REMARK 500 ILE A 22 -58.89 69.45 REMARK 500 ASP A 180 -156.65 -108.33 REMARK 500 ASP A 180 -160.66 -104.73 REMARK 500 LEU A 266 43.03 -95.02 REMARK 500 LEU A 267 33.62 -98.20 REMARK 500 PRO A 273 121.79 -32.97 REMARK 500 ASP A 274 151.71 -49.90 REMARK 500 TYR A 295 75.24 -117.65 REMARK 500 ALA A 319 81.83 -150.39 REMARK 500 THR A 320 -166.74 -124.79 REMARK 500 ASP A 344 89.19 -159.34 REMARK 500 ALA A 400 71.81 65.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 267 PRO A 268 144.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 835 DISTANCE = 6.26 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues MVA A 401 and IML A REMARK 800 402 DBREF 5N4I A 2 411 PDB 5N4I 5N4I 2 411 SEQRES 1 A 410 GLY THR SER THR GLN THR LYS ALA GLY SER LEU THR ILE SEQRES 2 A 410 VAL GLY THR GLY ILE GLU SER ILE GLY GLN MET THR LEU SEQRES 3 A 410 GLN ALA LEU SER TYR ILE GLU ALA ALA ALA LYS VAL PHE SEQRES 4 A 410 TYR CYS VAL ILE ASP PRO ALA THR GLU ALA PHE ILE LEU SEQRES 5 A 410 THR LYS ASN LYS ASN CYS VAL ASP LEU TYR GLN TYR TYR SEQRES 6 A 410 ASP ASN GLY LYS SER ARG LEU ASN THR TYR THR GLN MET SEQRES 7 A 410 SER GLU LEU MET VAL ARG GLU VAL ARG LYS GLY LEU ASP SEQRES 8 A 410 VAL VAL GLY VAL PHE TYR GLY HIS PRO GLY VAL PHE VAL SEQRES 9 A 410 ASN PRO SER HIS ARG ALA LEU ALA ILE ALA LYS SER GLU SEQRES 10 A 410 GLY TYR ARG ALA ARG MET LEU PRO GLY VAL SER ALA GLU SEQRES 11 A 410 ASP CYS LEU PHE ALA ASP LEU CYS ILE ASP PRO SER ASN SEQRES 12 A 410 PRO GLY CYS LEU THR TYR GLU ALA SER ASP PHE LEU ILE SEQRES 13 A 410 ARG ASP ARG PRO VAL SER ILE HIS SER HIS LEU VAL LEU SEQRES 14 A 410 PHE GLN VAL GLY CYS VAL GLY ILE ALA ASP PHE ASN PHE SEQRES 15 A 410 THR GLY PHE ASP ASN ASN LYS PHE GLY VAL LEU VAL ASP SEQRES 16 A 410 ARG LEU GLU GLN GLU TYR GLY ALA GLU HIS PRO VAL VAL SEQRES 17 A 410 HIS TYR ILE ALA ALA MET MET PRO HIS GLN ASP PRO VAL SEQRES 18 A 410 THR ASP LYS TYR THR VAL ALA GLN LEU ARG GLU PRO GLU SEQRES 19 A 410 ILE ALA LYS ARG VAL GLY GLY VAL SER THR PHE TYR ILE SEQRES 20 A 410 PRO PRO LYS ALA ARG LYS ALA SER ASN LEU ASP ILE ILE SEQRES 21 A 410 ARG ARG LEU GLU LEU LEU PRO ALA GLY GLN VAL PRO ASP SEQRES 22 A 410 LYS LYS ALA ARG ILE TYR PRO ALA ASN GLN TRP GLU PRO SEQRES 23 A 410 ASP VAL PRO GLU VAL GLU PRO TYR ARG PRO SER ASP GLN SEQRES 24 A 410 ALA ALA ILE ALA GLN LEU ALA ASP HIS ALA PRO PRO GLU SEQRES 25 A 410 GLN TYR GLN PRO LEU ALA THR SER LYS ALA MET SER ASP SEQRES 26 A 410 VAL MET THR LYS LEU ALA LEU ASP PRO LYS ALA LEU ALA SEQRES 27 A 410 ASP TYR LYS ALA ASP HIS ARG ALA PHE ALA GLN SER VAL SEQRES 28 A 410 PRO ASP LEU THR PRO GLN GLU ARG ALA ALA LEU GLU LEU SEQRES 29 A 410 GLY ASP SER TRP ALA ILE ARG CYS ALA MET LYS ASN MET SEQRES 30 A 410 PRO SER SER LEU LEU ASP ALA ALA ARG GLU SER GLY GLU SEQRES 31 A 410 GLU ALA SER GLN ASN GLY PHE PRO ALA MVA IML VAL VAL SEQRES 32 A 410 GLY VAL ILE GLY VAL ILE GLY HET MVA A 401 8 HET IML A 402 9 HET SAM A 501 27 HET GOL A 502 6 HET SCN A 503 3 HET SCN A 504 3 HET SCN A 505 3 HET SCN A 506 3 HET BCT A 507 4 HET MLI A 508 7 HETNAM MVA N-METHYLVALINE HETNAM IML N-METHYL-ISOLEUCINE HETNAM SAM S-ADENOSYLMETHIONINE HETNAM GOL GLYCEROL HETNAM SCN THIOCYANATE ION HETNAM BCT BICARBONATE ION HETNAM MLI MALONATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MVA C6 H13 N O2 FORMUL 1 IML C7 H15 N O2 FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 GOL C3 H8 O3 FORMUL 4 SCN 4(C N S 1-) FORMUL 8 BCT C H O3 1- FORMUL 9 MLI C3 H2 O4 2- FORMUL 10 HOH *235(H2 O) HELIX 1 AA1 THR A 26 ALA A 36 1 11 HELIX 2 AA2 ASP A 45 ASN A 56 1 12 HELIX 3 AA3 TYR A 63 TYR A 66 5 4 HELIX 4 AA4 SER A 71 LYS A 89 1 19 HELIX 5 AA5 VAL A 105 GLU A 118 1 14 HELIX 6 AA6 SER A 129 CYS A 139 1 11 HELIX 7 AA7 ALA A 152 ARG A 158 1 7 HELIX 8 AA8 LYS A 190 GLY A 203 1 14 HELIX 9 AA9 ALA A 229 ARG A 232 5 4 HELIX 10 AB1 GLU A 233 LYS A 238 1 6 HELIX 11 AB2 ASN A 257 LEU A 264 1 8 HELIX 12 AB3 ARG A 296 GLN A 305 1 10 HELIX 13 AB4 SER A 321 ASP A 334 1 14 HELIX 14 AB5 ASP A 334 ASP A 344 1 11 HELIX 15 AB6 ASP A 344 SER A 351 1 8 HELIX 16 AB7 THR A 356 GLY A 366 1 11 HELIX 17 AB8 ASP A 367 LYS A 376 1 10 HELIX 18 AB9 PRO A 379 ALA A 386 1 8 SHEET 1 AA1 5 CYS A 59 ASP A 61 0 SHEET 2 AA1 5 LYS A 38 CYS A 42 1 N TYR A 41 O VAL A 60 SHEET 3 AA1 5 ASP A 92 PHE A 97 1 O VAL A 96 N PHE A 40 SHEET 4 AA1 5 SER A 11 GLY A 16 1 N VAL A 15 O GLY A 95 SHEET 5 AA1 5 ARG A 121 MET A 124 1 O ARG A 123 N ILE A 14 SHEET 1 AA2 5 CYS A 147 GLU A 151 0 SHEET 2 AA2 5 HIS A 167 PHE A 171 1 O VAL A 169 N LEU A 148 SHEET 3 AA2 5 THR A 245 ILE A 248 -1 O ILE A 248 N LEU A 168 SHEET 4 AA2 5 PRO A 207 ILE A 212 -1 N VAL A 209 O TYR A 247 SHEET 5 AA2 5 VAL A 222 THR A 227 -1 O ASP A 224 N HIS A 210 LINK C ALA A 400 N MVA A 401 1555 1555 1.34 LINK C MVA A 401 N IML A 402 1555 1555 1.34 LINK C IML A 402 N VAL A 403 1555 1555 1.33 CISPEP 1 ASN A 144 PRO A 145 0 17.25 CISPEP 2 TYR A 280 PRO A 281 0 1.77 SITE 1 AC1 21 ILE A 19 TYR A 98 GLY A 99 HIS A 100 SITE 2 AC1 21 VAL A 103 PHE A 104 VAL A 105 SER A 129 SITE 3 AC1 21 ALA A 130 PHE A 171 GLN A 172 TYR A 211 SITE 4 AC1 21 ILE A 212 ALA A 213 GLY A 242 VAL A 243 SITE 5 AC1 21 SER A 244 THR A 245 HOH A 630 HOH A 701 SITE 6 AC1 21 HOH A 703 SITE 1 AC2 7 GLU A 131 PHE A 135 PRO A 142 CYS A 147 SITE 2 AC2 7 THR A 149 HOH A 658 HOH A 768 SITE 1 AC3 1 LEU A 333 SITE 1 AC4 3 VAL A 327 LYS A 330 HOH A 671 SITE 1 AC5 2 ASP A 334 HOH A 634 SITE 1 AC6 6 TYR A 280 PRO A 281 ALA A 282 GLN A 284 SITE 2 AC6 6 GLU A 291 VAL A 292 SITE 1 AC7 2 ALA A 302 GLN A 305 SITE 1 AC8 3 ALA A 400 VAL A 403 VAL A 404 CRYST1 85.885 91.951 162.181 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011643 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006166 0.00000