HEADER TRANSFERASE 11-FEB-17 5N4O TITLE CRYSTAL STRUCTURE OF HUMAN PIM-1 KINASE IN COMPLEX WITH A TITLE 2 CONSENSUSPEPTIDE AND FRAGMENT LIKE MOLEKULE (E)-3-(P-TOLYL)ACRYLIC TITLE 3 ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PIM-1; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.11.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: ISOFROM 2 OF PIM-1 KINASE; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PIMTIDE; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: PIM-1 CONSENSUS P SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLIC-SGC; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS SERINE THREONINE KINASE, TRANSFERASE, PROTO-ONCOGENE, FRAGMENT, PIM- KEYWDS 2 1, CONSENSUS PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR C.SIEFKER,A.HEINE,G.KLEBE REVDAT 3 17-JAN-24 5N4O 1 REMARK REVDAT 2 14-AUG-19 5N4O 1 REMARK REVDAT 1 28-FEB-18 5N4O 0 JRNL AUTH C.SIEFKER,A.HEINE,K.HARDES,A.STEINMETZER,G.KLEBE JRNL TITL A CRYSTALLOGRAPHIC FRAGMENT STUDY WITH HUMAN PIM-1 KINASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 21713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4018 - 4.4341 1.00 2643 140 0.1661 0.1605 REMARK 3 2 4.4341 - 3.5200 1.00 2582 136 0.1651 0.1707 REMARK 3 3 3.5200 - 3.0752 1.00 2577 135 0.1897 0.2241 REMARK 3 4 3.0752 - 2.7941 1.00 2586 136 0.2001 0.2419 REMARK 3 5 2.7941 - 2.5939 1.00 2580 136 0.2055 0.2189 REMARK 3 6 2.5939 - 2.4410 1.00 2554 134 0.2010 0.2363 REMARK 3 7 2.4410 - 2.3187 1.00 2594 137 0.1976 0.2233 REMARK 3 8 2.3187 - 2.2178 0.98 2512 131 0.2213 0.2599 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2261 REMARK 3 ANGLE : 0.794 3068 REMARK 3 CHIRALITY : 0.052 332 REMARK 3 PLANARITY : 0.005 406 REMARK 3 DIHEDRAL : 19.786 1336 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A):-139.3044 -9.4670 -0.3545 REMARK 3 T TENSOR REMARK 3 T11: 0.5853 T22: 0.5740 REMARK 3 T33: 0.8617 T12: -0.0628 REMARK 3 T13: -0.0293 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.6771 L22: 0.4815 REMARK 3 L33: 0.3464 L12: -0.2954 REMARK 3 L13: -0.3028 L23: 0.3752 REMARK 3 S TENSOR REMARK 3 S11: -0.1262 S12: 0.3868 S13: -0.6572 REMARK 3 S21: 0.3315 S22: -0.4879 S23: 0.1330 REMARK 3 S31: 0.1237 S32: 0.5080 S33: -0.0083 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A):-133.3316 -1.5378 5.3137 REMARK 3 T TENSOR REMARK 3 T11: 0.4978 T22: 0.3982 REMARK 3 T33: 0.4362 T12: -0.0489 REMARK 3 T13: -0.0558 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 0.1902 L22: 0.4035 REMARK 3 L33: 0.4454 L12: -0.0834 REMARK 3 L13: -0.0358 L23: -0.1550 REMARK 3 S TENSOR REMARK 3 S11: -0.2593 S12: 0.2084 S13: -0.0208 REMARK 3 S21: 0.5510 S22: 0.1717 S23: -0.1753 REMARK 3 S31: 0.2762 S32: 0.0155 S33: 0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A):-140.8058 3.2019 -1.6518 REMARK 3 T TENSOR REMARK 3 T11: 0.4010 T22: 0.3219 REMARK 3 T33: 0.3357 T12: -0.0354 REMARK 3 T13: -0.0590 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 0.1551 L22: 0.5244 REMARK 3 L33: 0.5315 L12: -0.2574 REMARK 3 L13: -0.2871 L23: 0.3856 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: 0.0129 S13: -0.1981 REMARK 3 S21: -0.0601 S22: 0.1723 S23: 0.1163 REMARK 3 S31: 0.3899 S32: -0.2065 S33: 0.0052 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A):-137.0980 21.0277 -5.3138 REMARK 3 T TENSOR REMARK 3 T11: 0.3000 T22: 0.3122 REMARK 3 T33: 0.3061 T12: -0.0347 REMARK 3 T13: 0.0037 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.5189 L22: 0.6737 REMARK 3 L33: 1.4028 L12: -0.1623 REMARK 3 L13: 0.3648 L23: -0.1025 REMARK 3 S TENSOR REMARK 3 S11: 0.0872 S12: 0.1116 S13: 0.0155 REMARK 3 S21: 0.0160 S22: -0.0159 S23: -0.0467 REMARK 3 S31: -0.1131 S32: 0.0159 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A):-133.0090 10.9815 -17.1872 REMARK 3 T TENSOR REMARK 3 T11: 0.5127 T22: 0.4834 REMARK 3 T33: 0.5203 T12: -0.0181 REMARK 3 T13: -0.0173 T23: -0.1562 REMARK 3 L TENSOR REMARK 3 L11: 0.0185 L22: 0.0875 REMARK 3 L33: 0.0498 L12: -0.0125 REMARK 3 L13: 0.0187 L23: 0.0363 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: 0.4755 S13: -0.1369 REMARK 3 S21: -0.3262 S22: 0.3080 S23: -0.2186 REMARK 3 S31: -0.2015 S32: 0.2755 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N4O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003328. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : SILICON REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21715 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.550 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 8.26 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3WE8 REMARK 200 REMARK 200 REMARK: HEXAGONAL ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, MGACE, GLYCEROL, DTT, BIS-TRIS REMARK 280 -PROPANE, PEG3350, ETHYLENE-GLYCOL, DMSO, ETHYLENE-GLYCOL, PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.54867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.77433 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.16150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.38717 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.93583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 ILE A 6 REMARK 465 ASN A 7 REMARK 465 SER A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 HIS A 11 REMARK 465 LEU A 12 REMARK 465 ARG A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 CYS A 17 REMARK 465 ASN A 18 REMARK 465 ASP A 19 REMARK 465 LEU A 20 REMARK 465 HIS A 21 REMARK 465 ALA A 22 REMARK 465 THR A 23 REMARK 465 LYS A 24 REMARK 465 LEU A 25 REMARK 465 ALA A 26 REMARK 465 PRO A 27 REMARK 465 GLY A 28 REMARK 465 LYS A 29 REMARK 465 GLU A 30 REMARK 465 LYS A 31 REMARK 465 GLU A 32 REMARK 465 GLY A 48 REMARK 465 PHE A 49 REMARK 465 SER A 306 REMARK 465 LEU A 307 REMARK 465 SER A 308 REMARK 465 PRO A 309 REMARK 465 GLY A 310 REMARK 465 PRO A 311 REMARK 465 SER A 312 REMARK 465 LYS A 313 REMARK 465 ALA B 1 REMARK 465 PRO B 11 REMARK 465 PRO B 12 REMARK 465 THR B 13 REMARK 465 ALA B 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 33 CG CD REMARK 470 LEU A 34 CG CD1 CD2 REMARK 470 GLU A 35 CD OE1 OE2 REMARK 470 SER A 36 OG REMARK 470 GLN A 39 CG CD OE1 NE2 REMARK 470 LEU A 44 CD1 CD2 REMARK 470 ILE A 56 CG2 CD1 REMARK 470 VAL A 58 CG1 CG2 REMARK 470 SER A 59 OG REMARK 470 ASN A 61 OD1 ND2 REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 SER A 75 OG REMARK 470 ASP A 76 OD1 OD2 REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 LEU A 80 CG CD1 CD2 REMARK 470 PRO A 81 CG CD REMARK 470 ASN A 82 CG OD1 ND2 REMARK 470 THR A 84 OG1 CG2 REMARK 470 ARG A 85 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 94 CD CE NZ REMARK 470 SER A 98 OG REMARK 470 PHE A 100 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 101 OG REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 124 CD OE1 OE2 REMARK 470 ARG A 179 CZ NH1 NH2 REMARK 470 ASP A 202 OD1 OD2 REMARK 470 HIS A 216 ND1 CD2 CE1 NE2 REMARK 470 GLN A 252 OE1 NE2 REMARK 470 GLU A 262 CD OE1 OE2 REMARK 470 ARG A 274 CZ NH1 NH2 REMARK 470 GLN A 297 CG CD OE1 NE2 REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 ARG B 5 NH1 NH2 REMARK 470 HIS B 7 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 60 23.04 -154.79 REMARK 500 ASP A 108 164.31 177.67 REMARK 500 ASP A 167 42.20 -143.92 REMARK 500 ASP A 186 81.51 63.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8MB A 401 DBREF 5N4O A 1 313 UNP P11309 PIM1_HUMAN 1 313 DBREF 5N4O B 1 14 PDB 5N4O 5N4O 1 14 SEQADV 5N4O GLY A 250 UNP P11309 ARG 250 ENGINEERED MUTATION SEQRES 1 A 313 MET LEU LEU SER LYS ILE ASN SER LEU ALA HIS LEU ARG SEQRES 2 A 313 ALA ALA PRO CYS ASN ASP LEU HIS ALA THR LYS LEU ALA SEQRES 3 A 313 PRO GLY LYS GLU LYS GLU PRO LEU GLU SER GLN TYR GLN SEQRES 4 A 313 VAL GLY PRO LEU LEU GLY SER GLY GLY PHE GLY SER VAL SEQRES 5 A 313 TYR SER GLY ILE ARG VAL SER ASP ASN LEU PRO VAL ALA SEQRES 6 A 313 ILE LYS HIS VAL GLU LYS ASP ARG ILE SER ASP TRP GLY SEQRES 7 A 313 GLU LEU PRO ASN GLY THR ARG VAL PRO MET GLU VAL VAL SEQRES 8 A 313 LEU LEU LYS LYS VAL SER SER GLY PHE SER GLY VAL ILE SEQRES 9 A 313 ARG LEU LEU ASP TRP PHE GLU ARG PRO ASP SER PHE VAL SEQRES 10 A 313 LEU ILE LEU GLU ARG PRO GLU PRO VAL GLN ASP LEU PHE SEQRES 11 A 313 ASP PHE ILE THR GLU ARG GLY ALA LEU GLN GLU GLU LEU SEQRES 12 A 313 ALA ARG SER PHE PHE TRP GLN VAL LEU GLU ALA VAL ARG SEQRES 13 A 313 HIS CYS HIS ASN CYS GLY VAL LEU HIS ARG ASP ILE LYS SEQRES 14 A 313 ASP GLU ASN ILE LEU ILE ASP LEU ASN ARG GLY GLU LEU SEQRES 15 A 313 LYS LEU ILE ASP PHE GLY SER GLY ALA LEU LEU LYS ASP SEQRES 16 A 313 THR VAL TYR THR ASP PHE ASP GLY THR ARG VAL TYR SER SEQRES 17 A 313 PRO PRO GLU TRP ILE ARG TYR HIS ARG TYR HIS GLY ARG SEQRES 18 A 313 SER ALA ALA VAL TRP SER LEU GLY ILE LEU LEU TYR ASP SEQRES 19 A 313 MET VAL CYS GLY ASP ILE PRO PHE GLU HIS ASP GLU GLU SEQRES 20 A 313 ILE ILE GLY GLY GLN VAL PHE PHE ARG GLN ARG VAL SER SEQRES 21 A 313 SER GLU CYS GLN HIS LEU ILE ARG TRP CYS LEU ALA LEU SEQRES 22 A 313 ARG PRO SER ASP ARG PRO THR PHE GLU GLU ILE GLN ASN SEQRES 23 A 313 HIS PRO TRP MET GLN ASP VAL LEU LEU PRO GLN GLU THR SEQRES 24 A 313 ALA GLU ILE HIS LEU HIS SER LEU SER PRO GLY PRO SER SEQRES 25 A 313 LYS SEQRES 1 B 14 ALA ARG LYS ARG ARG ARG HIS PRO SER GLY PRO PRO THR SEQRES 2 B 14 ALA HET 8MB A 401 12 HETNAM 8MB (~{E})-3-(4-METHYLPHENYL)PROP-2-ENOIC ACID FORMUL 3 8MB C10 H10 O2 FORMUL 4 HOH *84(H2 O) HELIX 1 AA1 PRO A 33 GLN A 37 1 5 HELIX 2 AA2 ASP A 72 ILE A 74 5 3 HELIX 3 AA3 MET A 88 SER A 97 1 10 HELIX 4 AA4 LEU A 129 GLY A 137 1 9 HELIX 5 AA5 GLN A 140 CYS A 161 1 22 HELIX 6 AA6 LYS A 169 GLU A 171 5 3 HELIX 7 AA7 THR A 204 SER A 208 5 5 HELIX 8 AA8 PRO A 209 HIS A 216 1 8 HELIX 9 AA9 HIS A 219 GLY A 238 1 20 HELIX 10 AB1 HIS A 244 GLY A 251 1 8 HELIX 11 AB2 SER A 260 LEU A 271 1 12 HELIX 12 AB3 ARG A 274 ARG A 278 5 5 HELIX 13 AB4 THR A 280 HIS A 287 1 8 HELIX 14 AB5 PRO A 288 GLN A 291 5 4 HELIX 15 AB6 LEU A 295 LEU A 304 1 10 SHEET 1 AA1 5 TYR A 38 GLY A 45 0 SHEET 2 AA1 5 SER A 51 ARG A 57 -1 O SER A 54 N PRO A 42 SHEET 3 AA1 5 PRO A 63 GLU A 70 -1 O ILE A 66 N TYR A 53 SHEET 4 AA1 5 SER A 115 GLU A 121 -1 O LEU A 120 N ALA A 65 SHEET 5 AA1 5 LEU A 106 GLU A 111 -1 N LEU A 107 O ILE A 119 SHEET 1 AA2 2 TRP A 77 GLU A 79 0 SHEET 2 AA2 2 ARG A 85 PRO A 87 -1 O VAL A 86 N GLY A 78 SHEET 1 AA3 3 VAL A 126 ASP A 128 0 SHEET 2 AA3 3 ILE A 173 ASP A 176 -1 O ILE A 175 N GLN A 127 SHEET 3 AA3 3 GLU A 181 LEU A 184 -1 O GLU A 181 N ASP A 176 SHEET 1 AA4 2 VAL A 163 LEU A 164 0 SHEET 2 AA4 2 ALA A 191 LEU A 192 -1 O ALA A 191 N LEU A 164 CISPEP 1 GLU A 124 PRO A 125 0 0.93 SITE 1 AC1 6 ALA A 65 LYS A 67 GLU A 121 LEU A 174 SITE 2 AC1 6 ASP A 186 HOH A 514 CRYST1 97.905 97.905 80.323 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010214 0.005897 0.000000 0.00000 SCALE2 0.000000 0.011794 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012450 0.00000