HEADER TRANSFERASE 14-FEB-17 5N5L
TITLE CRYSTAL STRUCTURE OF HUMAN PIM-1 KINASE IN COMPLEX WITH A
TITLE 2 CONSENSUSPEPTIDE AND [2-OXO-2-(1H-PYRROL-2-YL)ETHYL] 5-BROMO-1H-
TITLE 3 INDOLE-3-CARBOXYLATE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PIM-1;
COMPND 3 CHAIN: A;
COMPND 4 EC: 2.7.11.1;
COMPND 5 ENGINEERED: YES;
COMPND 6 MUTATION: YES;
COMPND 7 OTHER_DETAILS: ISOFROM 2 OF PIM-1 KINASE PHOSPHORYLATION OF SER261;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: PIMTIDE;
COMPND 10 CHAIN: B;
COMPND 11 ENGINEERED: YES;
COMPND 12 OTHER_DETAILS: PIM-1 CONSENSUS PEPTIDE
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: PIM1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLIC-SGC;
SOURCE 11 MOL_ID: 2;
SOURCE 12 SYNTHETIC: YES;
SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 14 ORGANISM_COMMON: HUMAN;
SOURCE 15 ORGANISM_TAXID: 9606
KEYWDS SERINE THREONINE KINASE, TRANSFERASE, PROTO-ONCOGENE, FRAGMENT, PIM-
KEYWDS 2 1, CONSENSUS PEPTIDE
EXPDTA X-RAY DIFFRACTION
AUTHOR C.SIEFKER,A.HEINE,G.KLEBE
REVDAT 4 23-OCT-24 5N5L 1 REMARK
REVDAT 3 17-JAN-24 5N5L 1 REMARK
REVDAT 2 14-AUG-19 5N5L 1 REMARK
REVDAT 1 07-MAR-18 5N5L 0
JRNL AUTH C.SIEFKER,A.HEINE,C.TAYLOR,P.KOLB,K.HARDES,A.STEINMETZER,
JRNL AUTH 2 G.KLEBE
JRNL TITL A CRYSTALLOGRAPHIC FRAGMENT STUDY WITH HUMAN PIM-1 KINASE
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 1.97 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.84
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 3 NUMBER OF REFLECTIONS : 30847
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.162
REMARK 3 R VALUE (WORKING SET) : 0.160
REMARK 3 FREE R VALUE : 0.195
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1541
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 48.8500 - 4.3792 1.00 2723 143 0.1635 0.1832
REMARK 3 2 4.3792 - 3.4762 1.00 2675 141 0.1412 0.1816
REMARK 3 3 3.4762 - 3.0369 1.00 2673 140 0.1591 0.1926
REMARK 3 4 3.0369 - 2.7592 1.00 2670 141 0.1637 0.2171
REMARK 3 5 2.7592 - 2.5615 1.00 2655 140 0.1689 0.2391
REMARK 3 6 2.5615 - 2.4105 1.00 2670 140 0.1595 0.1773
REMARK 3 7 2.4105 - 2.2897 1.00 2646 139 0.1517 0.1802
REMARK 3 8 2.2897 - 2.1901 1.00 2661 141 0.1618 0.2017
REMARK 3 9 2.1901 - 2.1058 1.00 2647 139 0.1671 0.1817
REMARK 3 10 2.1058 - 2.0331 1.00 2644 138 0.1890 0.2290
REMARK 3 11 2.0331 - 1.9695 0.99 2642 139 0.2044 0.2349
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.470
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.007 2348
REMARK 3 ANGLE : 0.765 3187
REMARK 3 CHIRALITY : 0.053 337
REMARK 3 PLANARITY : 0.005 428
REMARK 3 DIHEDRAL : 21.340 1387
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 96 )
REMARK 3 ORIGIN FOR THE GROUP (A):-183.2065 87.8190 -11.0508
REMARK 3 T TENSOR
REMARK 3 T11: 0.4401 T22: 0.2265
REMARK 3 T33: 0.3559 T12: 0.0066
REMARK 3 T13: 0.0389 T23: 0.0044
REMARK 3 L TENSOR
REMARK 3 L11: 0.3106 L22: 0.6652
REMARK 3 L33: 0.6001 L12: 0.2498
REMARK 3 L13: -0.1069 L23: -0.1134
REMARK 3 S TENSOR
REMARK 3 S11: -0.1359 S12: 0.0743 S13: 0.2744
REMARK 3 S21: -0.3256 S22: 0.1692 S23: -0.1244
REMARK 3 S31: -0.4042 S32: 0.1786 S33: 0.0141
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 140 )
REMARK 3 ORIGIN FOR THE GROUP (A):-189.3732 81.3552 -6.0587
REMARK 3 T TENSOR
REMARK 3 T11: 0.3548 T22: 0.1999
REMARK 3 T33: 0.2565 T12: 0.0249
REMARK 3 T13: 0.0214 T23: -0.0059
REMARK 3 L TENSOR
REMARK 3 L11: 0.2348 L22: 0.6587
REMARK 3 L33: 0.6223 L12: 0.1737
REMARK 3 L13: 0.3693 L23: 0.1241
REMARK 3 S TENSOR
REMARK 3 S11: -0.0291 S12: -0.0386 S13: 0.2480
REMARK 3 S21: 0.0318 S22: 0.1780 S23: 0.2549
REMARK 3 S31: -0.3608 S32: -0.1121 S33: 0.0484
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 305 )
REMARK 3 ORIGIN FOR THE GROUP (A):-185.7330 63.4543 -2.1896
REMARK 3 T TENSOR
REMARK 3 T11: 0.1739 T22: 0.1576
REMARK 3 T33: 0.1716 T12: 0.0305
REMARK 3 T13: -0.0120 T23: -0.0216
REMARK 3 L TENSOR
REMARK 3 L11: 1.0344 L22: 1.0984
REMARK 3 L33: 2.0989 L12: -0.0174
REMARK 3 L13: -0.2612 L23: 0.0256
REMARK 3 S TENSOR
REMARK 3 S11: 0.0551 S12: -0.0720 S13: -0.0356
REMARK 3 S21: 0.0189 S22: 0.0312 S23: -0.0043
REMARK 3 S31: 0.1134 S32: 0.0738 S33: 0.0000
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 10 )
REMARK 3 ORIGIN FOR THE GROUP (A):-181.4614 73.8057 9.4336
REMARK 3 T TENSOR
REMARK 3 T11: 0.3541 T22: 0.3261
REMARK 3 T33: 0.2918 T12: -0.0541
REMARK 3 T13: 0.0210 T23: -0.1152
REMARK 3 L TENSOR
REMARK 3 L11: 1.0027 L22: 0.4045
REMARK 3 L33: 0.4931 L12: -0.2455
REMARK 3 L13: -0.2653 L23: -0.3166
REMARK 3 S TENSOR
REMARK 3 S11: -0.1799 S12: -0.3768 S13: 0.0407
REMARK 3 S21: 0.0978 S22: 0.3163 S23: -0.4408
REMARK 3 S31: 0.0074 S32: 0.5213 S33: 0.0130
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5N5L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-FEB-17.
REMARK 100 THE DEPOSITION ID IS D_1200003377.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 16-SEP-16
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : BESSY
REMARK 200 BEAMLINE : 14.2
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409
REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL MONOCHROMATOR
REMARK 200 OPTICS : SILICON
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XDS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30857
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 6.840
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.6300
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4
REMARK 200 DATA REDUNDANCY IN SHELL : 6.58
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.170
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 3WE8
REMARK 200
REMARK 200 REMARK: HEXAGONAL ROD
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 60.00
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES LI2SO4 GLYCEROL DTT BIS-TRIS
REMARK 280 -PROPANE PEG3350 ETHYLENE-GLYCOL DMSO, PH 7.0, VAPOR DIFFUSION,
REMARK 280 SITTING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+1/6
REMARK 290 6555 X-Y,X,Z+5/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.55267
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.77633
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.16450
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.38817
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.94083
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1450 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 12750 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 LEU A 2
REMARK 465 LEU A 3
REMARK 465 SER A 4
REMARK 465 LYS A 5
REMARK 465 ILE A 6
REMARK 465 ASN A 7
REMARK 465 SER A 8
REMARK 465 LEU A 9
REMARK 465 ALA A 10
REMARK 465 HIS A 11
REMARK 465 LEU A 12
REMARK 465 ARG A 13
REMARK 465 ALA A 14
REMARK 465 ALA A 15
REMARK 465 PRO A 16
REMARK 465 CYS A 17
REMARK 465 ASN A 18
REMARK 465 ASP A 19
REMARK 465 LEU A 20
REMARK 465 HIS A 21
REMARK 465 ALA A 22
REMARK 465 THR A 23
REMARK 465 LYS A 24
REMARK 465 LEU A 25
REMARK 465 ALA A 26
REMARK 465 PRO A 27
REMARK 465 GLY A 28
REMARK 465 LYS A 29
REMARK 465 GLU A 30
REMARK 465 LYS A 31
REMARK 465 GLU A 32
REMARK 465 PRO A 81
REMARK 465 SER A 306
REMARK 465 LEU A 307
REMARK 465 SER A 308
REMARK 465 PRO A 309
REMARK 465 GLY A 310
REMARK 465 PRO A 311
REMARK 465 SER A 312
REMARK 465 LYS A 313
REMARK 465 ALA B 1
REMARK 465 PRO B 11
REMARK 465 PRO B 12
REMARK 465 THR B 13
REMARK 465 ALA B 14
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 PRO A 33 CG CD
REMARK 470 GLN A 39 CD OE1 NE2
REMARK 470 ILE A 56 CD1
REMARK 470 VAL A 58 CG1 CG2
REMARK 470 SER A 75 OG
REMARK 470 ASP A 76 OD1 OD2
REMARK 470 GLU A 79 CG CD OE1 OE2
REMARK 470 LEU A 80 CG CD1 CD2
REMARK 470 ASN A 82 CG OD1 ND2
REMARK 470 THR A 84 OG1 CG2
REMARK 470 ARG A 85 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 94 CE NZ
REMARK 470 SER A 98 OG
REMARK 470 PHE A 100 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 ARG A 105 CD NE CZ NH1 NH2
REMARK 470 ASP A 202 OD1 OD2
REMARK 470 ARG A 274 CG CD NE CZ NH1 NH2
REMARK 470 GLN A 297 OE1 NE2
REMARK 470 LYS B 3 CD CE NZ
REMARK 470 HIS B 7 O
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 60 13.82 -148.16
REMARK 500 ASP A 167 43.71 -149.57
REMARK 500 ASP A 186 73.46 60.70
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 8NZ A 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402
DBREF 5N5L A 1 313 UNP P11309 PIM1_HUMAN 1 313
DBREF 5N5L B 1 14 PDB 5N5L 5N5L 1 14
SEQADV 5N5L GLY A 250 UNP P11309 ARG 250 ENGINEERED MUTATION
SEQRES 1 A 313 MET LEU LEU SER LYS ILE ASN SER LEU ALA HIS LEU ARG
SEQRES 2 A 313 ALA ALA PRO CYS ASN ASP LEU HIS ALA THR LYS LEU ALA
SEQRES 3 A 313 PRO GLY LYS GLU LYS GLU PRO LEU GLU SER GLN TYR GLN
SEQRES 4 A 313 VAL GLY PRO LEU LEU GLY SER GLY GLY PHE GLY SER VAL
SEQRES 5 A 313 TYR SER GLY ILE ARG VAL SER ASP ASN LEU PRO VAL ALA
SEQRES 6 A 313 ILE LYS HIS VAL GLU LYS ASP ARG ILE SER ASP TRP GLY
SEQRES 7 A 313 GLU LEU PRO ASN GLY THR ARG VAL PRO MET GLU VAL VAL
SEQRES 8 A 313 LEU LEU LYS LYS VAL SER SER GLY PHE SER GLY VAL ILE
SEQRES 9 A 313 ARG LEU LEU ASP TRP PHE GLU ARG PRO ASP SER PHE VAL
SEQRES 10 A 313 LEU ILE LEU GLU ARG PRO GLU PRO VAL GLN ASP LEU PHE
SEQRES 11 A 313 ASP PHE ILE THR GLU ARG GLY ALA LEU GLN GLU GLU LEU
SEQRES 12 A 313 ALA ARG SER PHE PHE TRP GLN VAL LEU GLU ALA VAL ARG
SEQRES 13 A 313 HIS CYS HIS ASN CYS GLY VAL LEU HIS ARG ASP ILE LYS
SEQRES 14 A 313 ASP GLU ASN ILE LEU ILE ASP LEU ASN ARG GLY GLU LEU
SEQRES 15 A 313 LYS LEU ILE ASP PHE GLY SER GLY ALA LEU LEU LYS ASP
SEQRES 16 A 313 THR VAL TYR THR ASP PHE ASP GLY THR ARG VAL TYR SER
SEQRES 17 A 313 PRO PRO GLU TRP ILE ARG TYR HIS ARG TYR HIS GLY ARG
SEQRES 18 A 313 SER ALA ALA VAL TRP SER LEU GLY ILE LEU LEU TYR ASP
SEQRES 19 A 313 MET VAL CYS GLY ASP ILE PRO PHE GLU HIS ASP GLU GLU
SEQRES 20 A 313 ILE ILE GLY GLY GLN VAL PHE PHE ARG GLN ARG VAL SER
SEQRES 21 A 313 SEP GLU CYS GLN HIS LEU ILE ARG TRP CYS LEU ALA LEU
SEQRES 22 A 313 ARG PRO SER ASP ARG PRO THR PHE GLU GLU ILE GLN ASN
SEQRES 23 A 313 HIS PRO TRP MET GLN ASP VAL LEU LEU PRO GLN GLU THR
SEQRES 24 A 313 ALA GLU ILE HIS LEU HIS SER LEU SER PRO GLY PRO SER
SEQRES 25 A 313 LYS
SEQRES 1 B 14 ALA ARG LYS ARG ARG ARG HIS PRO SER GLY PRO PRO THR
SEQRES 2 B 14 ALA
MODRES 5N5L SEP A 261 SER MODIFIED RESIDUE
HET SEP A 261 10
HET 8NZ A 401 13
HET GOL A 402 6
HETNAM SEP PHOSPHOSERINE
HETNAM 8NZ 5-BROMANYL-1~{H}-INDOLE-3-CARBOXYLIC ACID
HETNAM GOL GLYCEROL
HETSYN SEP PHOSPHONOSERINE
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 1 SEP C3 H8 N O6 P
FORMUL 3 8NZ C9 H6 BR N O2
FORMUL 4 GOL C3 H8 O3
FORMUL 5 HOH *166(H2 O)
HELIX 1 AA1 PRO A 33 GLN A 37 1 5
HELIX 2 AA2 ASP A 72 ILE A 74 5 3
HELIX 3 AA3 MET A 88 SER A 97 1 10
HELIX 4 AA4 LEU A 129 GLY A 137 1 9
HELIX 5 AA5 GLN A 140 CYS A 161 1 22
HELIX 6 AA6 LYS A 169 GLU A 171 5 3
HELIX 7 AA7 THR A 204 SER A 208 5 5
HELIX 8 AA8 PRO A 209 HIS A 216 1 8
HELIX 9 AA9 HIS A 219 GLY A 238 1 20
HELIX 10 AB1 HIS A 244 GLY A 251 1 8
HELIX 11 AB2 SER A 260 LEU A 271 1 12
HELIX 12 AB3 ARG A 274 ARG A 278 5 5
HELIX 13 AB4 THR A 280 ASN A 286 1 7
HELIX 14 AB5 HIS A 287 GLN A 291 5 5
HELIX 15 AB6 LEU A 295 LEU A 304 1 10
SHEET 1 AA1 5 TYR A 38 GLY A 47 0
SHEET 2 AA1 5 GLY A 50 ARG A 57 -1 O SER A 54 N GLY A 41
SHEET 3 AA1 5 PRO A 63 GLU A 70 -1 O HIS A 68 N SER A 51
SHEET 4 AA1 5 SER A 115 GLU A 121 -1 O LEU A 118 N LYS A 67
SHEET 5 AA1 5 LEU A 106 GLU A 111 -1 N LEU A 107 O ILE A 119
SHEET 1 AA2 2 TRP A 77 GLU A 79 0
SHEET 2 AA2 2 ARG A 85 PRO A 87 -1 O VAL A 86 N GLY A 78
SHEET 1 AA3 3 VAL A 126 ASP A 128 0
SHEET 2 AA3 3 ILE A 173 ASP A 176 -1 O ILE A 175 N GLN A 127
SHEET 3 AA3 3 GLU A 181 LEU A 184 -1 O GLU A 181 N ASP A 176
SHEET 1 AA4 2 VAL A 163 LEU A 164 0
SHEET 2 AA4 2 ALA A 191 LEU A 192 -1 O ALA A 191 N LEU A 164
LINK C SER A 260 N SEP A 261 1555 1555 1.33
LINK C SEP A 261 N GLU A 262 1555 1555 1.33
CISPEP 1 GLU A 124 PRO A 125 0 -0.57
SITE 1 AC1 5 LEU A 44 PHE A 49 VAL A 52 LEU A 174
SITE 2 AC1 5 ASP A 186
SITE 1 AC2 6 TYR A 233 PRO A 241 PHE A 242 GLN A 252
SITE 2 AC2 6 PHE A 254 ARG A 256
CRYST1 97.670 97.670 80.329 90.00 90.00 120.00 P 65 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010239 0.005911 0.000000 0.00000
SCALE2 0.000000 0.011822 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012449 0.00000