HEADER IMMUNE SYSTEM 20-FEB-17 5N7B TITLE UNDERSTANDING THE SINGULAR CONFORMATIONAL LANDSCAPE OF THE TN TITLE 2 ANTIGENS: SULFUR-FOR- OXYGEN SUBSTITUTION IN THE GLYCOSIDIC LINKAGE TITLE 3 PROVIDES NEW INSIGHTS INTO MOLECULAR RECOGNITION BY AN ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG HEAVY CHAIN V-III REGION J606,IG LAMBDA-1 CHAIN V REGION COMPND 3 S43; COMPND 4 CHAIN: H; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: PLEASE FOLLOW THE NUMBERING DESCRIBED IN THE PDB ENTRY COMPND 7 5A2K; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: APD(CG6)RP(NH2) PEPTIDE; COMPND 10 CHAIN: I; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PHAFFII GS115; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 644223; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPICZALPHAA; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS IMMUNE SYSTEM, ANTIBODIES, ANTIGEN TN EXPDTA X-RAY DIFFRACTION AUTHOR I.COMPANON,N.MARTINEZ-SAEZ,J.CASTRO-LOPEZ,J.JIMENEZ-BARBERO, AUTHOR 2 G.J.L.BERNARDES,J.H.BUSTO,A.AVENOZA,G.JIMENEZ-OSES,R.HURTADO- AUTHOR 3 GUERRERO,J.M.PEREGRINA,F.CORZANA REVDAT 4 17-JAN-24 5N7B 1 HETSYN LINK REVDAT 3 29-JUL-20 5N7B 1 COMPND REMARK HETNAM SITE REVDAT 3 2 1 ATOM REVDAT 2 10-JUL-19 5N7B 1 JRNL REVDAT 1 27-JUN-18 5N7B 0 JRNL AUTH I.COMPANON,A.GUERREIRO,V.MANGINI,J.CASTRO-LOPEZ, JRNL AUTH 2 M.ESCUDERO-CASAO,A.AVENOZA,J.H.BUSTO,S.CASTILLON, JRNL AUTH 3 J.JIMENEZ-BARBERO,J.L.ASENSIO,G.JIMENEZ-OSES,O.BOUTUREIRA, JRNL AUTH 4 J.M.PEREGRINA,R.HURTADO-GUERRERO,R.FIAMMENGO, JRNL AUTH 5 G.J.L.BERNARDES,F.CORZANA JRNL TITL STRUCTURE-BASED DESIGN OF POTENT TUMOR-ASSOCIATED ANTIGENS: JRNL TITL 2 MODULATION OF PEPTIDE PRESENTATION BY SINGLE-ATOM O/S OR JRNL TITL 3 O/SE SUBSTITUTIONS AT THE GLYCOSIDIC LINKAGE. JRNL REF J.AM.CHEM.SOC. V. 141 4063 2019 JRNL REFN ESSN 1520-5126 JRNL PMID 30726084 JRNL DOI 10.1021/JACS.8B13503 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 24415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.700 REMARK 3 FREE R VALUE TEST SET COUNT : 675 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1761 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1770 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39000 REMARK 3 B22 (A**2) : 1.31000 REMARK 3 B33 (A**2) : -1.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.411 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1947 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1793 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2647 ; 1.540 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4132 ; 1.450 ; 3.029 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 233 ; 6.057 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;36.687 ;24.051 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 280 ;13.097 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;23.350 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 298 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2172 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 453 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 919 ; 1.269 ; 2.138 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 917 ; 1.269 ; 2.137 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1144 ; 2.002 ; 3.195 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1144 ; 2.001 ; 3.195 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1028 ; 1.819 ; 2.509 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1028 ; 1.815 ; 2.509 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1499 ; 2.928 ; 3.653 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2064 ; 4.975 ;25.851 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2065 ; 4.976 ;25.860 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5N7B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25141 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP MOLREP REMARK 200 STARTING MODEL: 5A2I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M DISODIUM HYDROGEN REMARK 280 PHOSPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.70150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.45850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.32400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.45850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.70150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.32400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 990 REMARK 465 SER H 991 REMARK 465 SER H 992 REMARK 465 GLY H 993 REMARK 465 GLY H 994 REMARK 465 GLY H 995 REMARK 465 GLY H 996 REMARK 465 SER H 997 REMARK 465 GLY H 998 REMARK 465 GLY H 999 REMARK 465 GLY H 1000 REMARK 465 GLY H 1001 REMARK 465 GLY H 1002 REMARK 465 SER H 1003 REMARK 465 SER H 1004 REMARK 465 GLY H 1005 REMARK 465 SER H 1006 REMARK 465 SER H 1007 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 1303 O HOH H 1361 0.46 REMARK 500 O2 EDO H 1205 O HOH H 1301 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG I 5 NE ARG I 5 CZ 0.317 REMARK 500 ARG I 5 CZ ARG I 5 NH1 0.107 REMARK 500 ARG I 5 CZ ARG I 5 NH1 0.115 REMARK 500 ARG I 5 CZ ARG I 5 NH2 0.097 REMARK 500 ARG I 5 CZ ARG I 5 NH2 0.091 REMARK 500 PRO I 6 CA PRO I 6 C -0.132 REMARK 500 PRO I 6 CA PRO I 6 C -0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG H 52 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG H 69 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG H 69 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG I 5 CD - NE - CZ ANGL. DEV. = -11.5 DEGREES REMARK 500 ARG I 5 CD - NE - CZ ANGL. DEV. = -23.9 DEGREES REMARK 500 ARG I 5 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG I 5 NE - CZ - NH1 ANGL. DEV. = -12.0 DEGREES REMARK 500 ARG I 5 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG I 5 NE - CZ - NH2 ANGL. DEV. = 11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG H 52 -155.33 -98.02 REMARK 500 VAL H 101 108.03 80.74 REMARK 500 THR H1060 -54.61 73.76 REMARK 500 ASN H1061 22.52 -145.21 REMARK 500 ALA H1093 171.73 179.73 REMARK 500 SER H1102 -59.81 68.33 REMARK 500 ASN H1103 14.26 -151.10 REMARK 500 PRO I 2 -162.44 -79.91 REMARK 500 PRO I 2 -161.46 -79.61 REMARK 500 REMARK 500 REMARK: NULL DBREF 5N7B H 1 118 UNP P01801 HVM32_MOUSE 1 114 DBREF 5N7B H 1007 1117 UNP P01727 LV1E_MOUSE 19 129 DBREF 5N7B I 1 7 PDB 5N7B 5N7B 1 7 SEQADV 5N7B GLN H 1 UNP P01801 GLU 1 CONFLICT SEQADV 5N7B GLN H 3 UNP P01801 LYS 3 CONFLICT SEQADV 5N7B GLN H 5 UNP P01801 GLU 5 CONFLICT SEQADV 5N7B GLY H 100 UNP P01801 INSERTION SEQADV 5N7B VAL H 101 UNP P01801 INSERTION SEQADV 5N7B GLY H 102 UNP P01801 THR 100 CONFLICT SEQADV 5N7B GLN H 103 UNP P01801 GLY 101 CONFLICT SEQADV 5N7B THR H 114 UNP P01801 LEU 110 CONFLICT SEQADV 5N7B SER H 990 UNP P01801 LINKER SEQADV 5N7B SER H 991 UNP P01801 LINKER SEQADV 5N7B SER H 992 UNP P01801 LINKER SEQADV 5N7B GLY H 993 UNP P01801 LINKER SEQADV 5N7B GLY H 994 UNP P01801 LINKER SEQADV 5N7B GLY H 995 UNP P01801 LINKER SEQADV 5N7B GLY H 996 UNP P01801 LINKER SEQADV 5N7B SER H 997 UNP P01801 LINKER SEQADV 5N7B GLY H 998 UNP P01801 LINKER SEQADV 5N7B GLY H 999 UNP P01801 LINKER SEQADV 5N7B GLY H 1000 UNP P01801 LINKER SEQADV 5N7B GLY H 1001 UNP P01801 LINKER SEQADV 5N7B GLY H 1002 UNP P01801 LINKER SEQADV 5N7B SER H 1003 UNP P01801 LINKER SEQADV 5N7B SER H 1004 UNP P01801 LINKER SEQADV 5N7B GLY H 1005 UNP P01801 LINKER SEQADV 5N7B SER H 1006 UNP P01801 LINKER SEQADV 5N7B ASP H 1008 UNP P01727 GLN 20 CONFLICT SEQADV 5N7B ILE H 1009 UNP P01727 ALA 21 CONFLICT SEQADV 5N7B ALA H 1087 UNP P01727 THR 99 CONFLICT SEQADV 5N7B ILE H 1094 UNP P01727 MET 106 CONFLICT SEQRES 1 H 244 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 244 PRO GLY GLY SER MET LYS LEU SER CYS VAL ALA SER GLY SEQRES 3 H 244 PHE THR PHE SER ASN TYR TRP MET ASN TRP VAL ARG GLN SEQRES 4 H 244 SER PRO GLU LYS GLY LEU GLU TRP VAL ALA GLU ILE ARG SEQRES 5 H 244 LEU LYS SER ASN ASN TYR ALA THR HIS TYR ALA GLU SER SEQRES 6 H 244 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASP SER LYS SEQRES 7 H 244 SER SER VAL TYR LEU GLN MET ASN ASN LEU ARG ALA GLU SEQRES 8 H 244 ASP THR GLY ILE TYR TYR CYS THR GLY VAL GLY GLN PHE SEQRES 9 H 244 ALA TYR TRP GLY GLN GLY THR THR VAL THR VAL SER SER SEQRES 10 H 244 SER SER GLY GLY GLY GLY SER GLY GLY GLY GLY GLY SER SEQRES 11 H 244 SER GLY SER SER ASP ILE VAL VAL THR GLN GLU SER ALA SEQRES 12 H 244 LEU THR THR SER PRO GLY GLU THR VAL THR LEU THR CYS SEQRES 13 H 244 ARG SER SER THR GLY ALA VAL THR THR SER ASN TYR ALA SEQRES 14 H 244 ASN TRP VAL GLN GLU LYS PRO ASP HIS LEU PHE THR GLY SEQRES 15 H 244 LEU ILE GLY GLY THR ASN ASN ARG ALA PRO GLY VAL PRO SEQRES 16 H 244 ALA ARG PHE SER GLY SER LEU ILE GLY ASP LYS ALA ALA SEQRES 17 H 244 LEU THR ILE THR GLY ALA GLN THR GLU ASP GLU ALA ILE SEQRES 18 H 244 TYR PHE CYS ALA LEU TRP TYR SER ASN HIS TRP VAL PHE SEQRES 19 H 244 GLY GLY GLY THR LYS LEU THR VAL LEU GLY SEQRES 1 I 7 ALA PRO ASP CG6 ARG PRO NH2 HET CG6 I 4 14 HET NH2 I 7 2 HET EDO H1201 4 HET EDO H1202 4 HET EDO H1203 4 HET EDO H1204 4 HET EDO H1205 4 HET EDO H1206 4 HET EDO H1207 4 HET A2G I 101 28 HETNAM CG6 BETA-METHYL-CYSTEINE HETNAM NH2 AMINO GROUP HETNAM EDO 1,2-ETHANEDIOL HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETSYN EDO ETHYLENE GLYCOL HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE FORMUL 2 CG6 C4 H9 N O2 S FORMUL 2 NH2 H2 N FORMUL 3 EDO 7(C2 H6 O2) FORMUL 10 A2G C8 H15 N O6 FORMUL 11 HOH *179(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 LEU H 53 ASN H 57 5 5 HELIX 3 AA3 ASP H 76 LYS H 78 5 3 HELIX 4 AA4 ARG H 89 THR H 93 5 5 HELIX 5 AA5 THR H 1037 TYR H 1041 5 5 HELIX 6 AA6 GLN H 1088 GLU H 1092 5 5 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 MET H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA1 4 SER H 80 MET H 85 -1 O MET H 85 N MET H 18 SHEET 4 AA1 4 PHE H 70 ASP H 75 -1 N SER H 73 O TYR H 82 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 113 VAL H 117 1 O THR H 116 N GLY H 10 SHEET 3 AA2 6 GLY H 94 GLY H 100 -1 N GLY H 94 O VAL H 115 SHEET 4 AA2 6 MET H 34 SER H 40 -1 N VAL H 37 O TYR H 97 SHEET 5 AA2 6 GLY H 44 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 THR H 60 TYR H 62 -1 O HIS H 61 N GLU H 50 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 113 VAL H 117 1 O THR H 116 N GLY H 10 SHEET 3 AA3 4 GLY H 94 GLY H 100 -1 N GLY H 94 O VAL H 115 SHEET 4 AA3 4 TYR H 108 TRP H 109 -1 O TYR H 108 N GLY H 100 SHEET 1 AA4 4 VAL H1011 GLN H1013 0 SHEET 2 AA4 4 THR H1024 SER H1031 -1 O ARG H1030 N THR H1012 SHEET 3 AA4 4 LYS H1079 THR H1085 -1 O LEU H1082 N LEU H1027 SHEET 4 AA4 4 PHE H1071 ILE H1076 -1 N SER H1072 O THR H1083 SHEET 1 AA5 6 ALA H1016 THR H1019 0 SHEET 2 AA5 6 THR H1111 VAL H1115 1 O THR H1114 N THR H1019 SHEET 3 AA5 6 ALA H1093 TYR H1101 -1 N ALA H1093 O LEU H1113 SHEET 4 AA5 6 ASN H1043 LYS H1048 -1 N GLU H1047 O ILE H1094 SHEET 5 AA5 6 LEU H1052 GLY H1058 -1 O THR H1054 N GLN H1046 SHEET 6 AA5 6 ASN H1062 ARG H1063 -1 O ASN H1062 N GLY H1058 SHEET 1 AA6 4 ALA H1016 THR H1019 0 SHEET 2 AA6 4 THR H1111 VAL H1115 1 O THR H1114 N THR H1019 SHEET 3 AA6 4 ALA H1093 TYR H1101 -1 N ALA H1093 O LEU H1113 SHEET 4 AA6 4 HIS H1104 PHE H1107 -1 O HIS H1104 N TYR H1101 SSBOND 1 CYS H 22 CYS H 98 1555 1555 2.07 SSBOND 2 CYS H 1029 CYS H 1097 1555 1555 2.08 LINK C AASP I 3 N ACG6 I 4 1555 1555 1.34 LINK C BASP I 3 N BCG6 I 4 1555 1555 1.35 LINK C ACG6 I 4 N AARG I 5 1555 1555 1.34 LINK C BCG6 I 4 N BARG I 5 1555 1555 1.34 LINK SG ACG6 I 4 C1 AA2G I 101 1555 1555 1.79 LINK SG BCG6 I 4 C1 BA2G I 101 1555 1555 1.79 LINK C APRO I 6 N ANH2 I 7 1555 1555 1.33 LINK C BPRO I 6 N BNH2 I 7 1555 1555 1.33 CISPEP 1 GLY H 102 GLN H 103 0 -8.45 CISPEP 2 PRO H 1049 ASP H 1050 0 -1.83 CRYST1 35.403 68.648 90.917 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028246 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014567 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010999 0.00000