HEADER BIOTIN BINDING PROTEIN 24-FEB-17 5N8T TITLE CRYSTAL STRUCTURE OF STREPTAVIDIN D-AMINO ACID CONTAINING PEPTIDE TITLE 2 GDLWQHEATWKKQ COMPND MOL_ID: 1; COMPND 2 MOLECULE: STREPTAVIDIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DLE-DTR-DGN-DHI-DGL-DAL-DTH-DTR-DLY; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVIDINII; SOURCE 3 ORGANISM_TAXID: 1895; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: STREPTOMYCES AVIDINII; SOURCE 9 ORGANISM_TAXID: 1895 KEYWDS STREPTAVIDIN, BIOTIN BINDING, D-AMINO ACIDS, STREPTAVIDIN PEPTIDE KEYWDS 2 COMPLEX, BIOTIN BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.LYAMICHEV,L.GOODRICH,E.SULLIVAN,R.BANNEN,J.BENZ,T.ALBERT,J.PATEL REVDAT 2 07-DEC-22 5N8T 1 COMPND SOURCE REMARK DBREF REVDAT 2 2 1 SEQRES HELIX LINK SITE REVDAT 2 3 1 ATOM REVDAT 1 04-OCT-17 5N8T 0 JRNL AUTH V.I.LYAMICHEV,L.E.GOODRICH,E.H.SULLIVAN,R.M.BANNEN,J.BENZ, JRNL AUTH 2 T.J.ALBERT,J.J.PATEL JRNL TITL STEPWISE EVOLUTION IMPROVES IDENTIFICATION OF DIVERSE JRNL TITL 2 PEPTIDES BINDING TO A PROTEIN TARGET. JRNL REF SCI REP V. 7 12116 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28935886 JRNL DOI 10.1038/S41598-017-12440-1 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 946 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1333 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.4150 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 981 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.84000 REMARK 3 B22 (A**2) : -1.84000 REMARK 3 B33 (A**2) : 3.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.602 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1021 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 877 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1402 ; 1.526 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2024 ; 0.908 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 133 ; 7.051 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 38 ;25.022 ;23.684 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 127 ;10.182 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;13.595 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 156 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1171 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 237 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 520 ; 1.072 ; 2.906 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 519 ; 1.069 ; 2.906 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 648 ; 1.692 ; 4.347 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 649 ; 1.692 ; 4.348 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 500 ; 1.088 ; 2.984 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 500 ; 1.085 ; 2.984 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 752 ; 1.723 ; 4.433 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1169 ; 4.879 ;34.039 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1170 ; 4.877 ;34.052 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3958 15.3503 3.0588 REMARK 3 T TENSOR REMARK 3 T11: 0.1174 T22: 0.0418 REMARK 3 T33: 0.0924 T12: 0.0262 REMARK 3 T13: -0.0185 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 2.5671 L22: 2.3993 REMARK 3 L33: 1.4852 L12: -0.6185 REMARK 3 L13: -0.0499 L23: 0.0823 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: -0.1963 S13: 0.4635 REMARK 3 S21: 0.1857 S22: 0.0292 S23: -0.1554 REMARK 3 S31: -0.2466 S32: 0.0182 S33: -0.0030 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 11 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0296 12.0096 15.6319 REMARK 3 T TENSOR REMARK 3 T11: 0.2524 T22: 0.3275 REMARK 3 T33: 0.0710 T12: 0.0447 REMARK 3 T13: -0.0182 T23: -0.1472 REMARK 3 L TENSOR REMARK 3 L11: 4.7581 L22: 6.5548 REMARK 3 L33: 12.4180 L12: -2.1665 REMARK 3 L13: 4.3552 L23: -4.1064 REMARK 3 S TENSOR REMARK 3 S11: -0.0786 S12: -1.0799 S13: 0.4123 REMARK 3 S21: 0.5627 S22: -0.0428 S23: 0.1816 REMARK 3 S31: 0.1083 S32: -0.5432 S33: 0.1214 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5N8T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.700001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18228 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 47.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.48 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 14.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.95000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE PH 4.5, 20% REMARK 280 PEG4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.88950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.88950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.20250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.88950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.88950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.20250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.88950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.88950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.20250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.88950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.88950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.20250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 324 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 359 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 ARG A -22 REMARK 465 LYS A -21 REMARK 465 ILE A -20 REMARK 465 VAL A -19 REMARK 465 VAL A -18 REMARK 465 ALA A -17 REMARK 465 ALA A -16 REMARK 465 ILE A -15 REMARK 465 ALA A -14 REMARK 465 VAL A -13 REMARK 465 SER A -12 REMARK 465 LEU A -11 REMARK 465 THR A -10 REMARK 465 THR A -9 REMARK 465 VAL A -8 REMARK 465 SER A -7 REMARK 465 ILE A -6 REMARK 465 THR A -5 REMARK 465 ALA A -4 REMARK 465 SER A -3 REMARK 465 ALA A -2 REMARK 465 SER A -1 REMARK 465 ALA A 0 REMARK 465 ASP A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 ASP A 5 REMARK 465 SER A 6 REMARK 465 LYS A 7 REMARK 465 ALA A 8 REMARK 465 GLN A 9 REMARK 465 VAL A 10 REMARK 465 SER A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 GLU A 14 REMARK 465 PRO A 135 REMARK 465 SER A 136 REMARK 465 ALA A 137 REMARK 465 ALA A 138 REMARK 465 SER A 139 REMARK 465 ILE A 140 REMARK 465 ASP A 141 REMARK 465 ALA A 142 REMARK 465 ALA A 143 REMARK 465 LYS A 144 REMARK 465 LYS A 145 REMARK 465 ALA A 146 REMARK 465 GLY A 147 REMARK 465 VAL A 148 REMARK 465 ASN A 149 REMARK 465 ASN A 150 REMARK 465 GLY A 151 REMARK 465 ASN A 152 REMARK 465 PRO A 153 REMARK 465 LEU A 154 REMARK 465 ASP A 155 REMARK 465 ALA A 156 REMARK 465 VAL A 157 REMARK 465 GLN A 158 REMARK 465 GLN A 159 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 66 42.33 -105.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 364 DISTANCE = 5.83 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide DLE A 201 and DTR A REMARK 800 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide DTR A 202 and DGN A REMARK 800 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide DGN A 203 and DHI A REMARK 800 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide DHI A 204 and DGL A REMARK 800 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide DGL A 205 and DAL A REMARK 800 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide DAL A 206 and DTH A REMARK 800 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide DTH A 207 and DTR A REMARK 800 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide DTR A 208 and DLY A REMARK 800 209 DBREF 5N8T A -23 159 UNP P22629 SAV_STRAV 1 183 DBREF 5N8T B 201 209 PDB 5N8T 5N8T 201 209 SEQRES 1 A 183 MET ARG LYS ILE VAL VAL ALA ALA ILE ALA VAL SER LEU SEQRES 2 A 183 THR THR VAL SER ILE THR ALA SER ALA SER ALA ASP PRO SEQRES 3 A 183 SER LYS ASP SER LYS ALA GLN VAL SER ALA ALA GLU ALA SEQRES 4 A 183 GLY ILE THR GLY THR TRP TYR ASN GLN LEU GLY SER THR SEQRES 5 A 183 PHE ILE VAL THR ALA GLY ALA ASP GLY ALA LEU THR GLY SEQRES 6 A 183 THR TYR GLU SER ALA VAL GLY ASN ALA GLU SER ARG TYR SEQRES 7 A 183 VAL LEU THR GLY ARG TYR ASP SER ALA PRO ALA THR ASP SEQRES 8 A 183 GLY SER GLY THR ALA LEU GLY TRP THR VAL ALA TRP LYS SEQRES 9 A 183 ASN ASN TYR ARG ASN ALA HIS SER ALA THR THR TRP SER SEQRES 10 A 183 GLY GLN TYR VAL GLY GLY ALA GLU ALA ARG ILE ASN THR SEQRES 11 A 183 GLN TRP LEU LEU THR SER GLY THR THR GLU ALA ASN ALA SEQRES 12 A 183 TRP LYS SER THR LEU VAL GLY HIS ASP THR PHE THR LYS SEQRES 13 A 183 VAL LYS PRO SER ALA ALA SER ILE ASP ALA ALA LYS LYS SEQRES 14 A 183 ALA GLY VAL ASN ASN GLY ASN PRO LEU ASP ALA VAL GLN SEQRES 15 A 183 GLN SEQRES 1 B 9 DLE DTR DGN DHI DGL DAL DTH DTR DLY HET DLE B 201 8 HET DTR B 202 14 HET DGN B 203 9 HET DHI B 204 10 HET DGL B 205 9 HET DAL B 206 5 HET DTH B 207 7 HET DTR B 208 14 HET DLY B 209 9 HETNAM DLE D-LEUCINE HETNAM DTR D-TRYPTOPHAN HETNAM DGN D-GLUTAMINE HETNAM DHI D-HISTIDINE HETNAM DGL D-GLUTAMIC ACID HETNAM DAL D-ALANINE HETNAM DTH D-THREONINE HETNAM DLY D-LYSINE FORMUL 2 DLE C6 H13 N O2 FORMUL 2 DTR 2(C11 H12 N2 O2) FORMUL 2 DGN C5 H10 N2 O3 FORMUL 2 DHI C6 H10 N3 O2 1+ FORMUL 2 DGL C5 H9 N O4 FORMUL 2 DAL C3 H7 N O2 FORMUL 2 DTH C4 H9 N O3 FORMUL 2 DLY C6 H14 N2 O2 FORMUL 3 HOH *67(H2 O) HELIX 1 AA1 ASN A 49 ARG A 53 5 5 HELIX 2 AA2 ASN A 118 LYS A 121 5 4 HELIX 3 AA3 DTR B 202 DTH B 207 1 6 SHEET 1 AA1 9 GLY A 19 ASN A 23 0 SHEET 2 AA1 9 THR A 28 ALA A 33 -1 O PHE A 29 N TRP A 21 SHEET 3 AA1 9 ALA A 38 GLU A 44 -1 O THR A 42 N ILE A 30 SHEET 4 AA1 9 TYR A 54 TYR A 60 -1 O TYR A 54 N TYR A 43 SHEET 5 AA1 9 THR A 71 LYS A 80 -1 O THR A 76 N THR A 57 SHEET 6 AA1 9 ASN A 85 VAL A 97 -1 O SER A 88 N TRP A 79 SHEET 7 AA1 9 ARG A 103 SER A 112 -1 O ARG A 103 N VAL A 97 SHEET 8 AA1 9 THR A 123 THR A 131 -1 O PHE A 130 N ILE A 104 SHEET 9 AA1 9 GLY A 19 ASN A 23 -1 N TYR A 22 O THR A 131 LINK C DLE B 201 N DTR B 202 1555 1555 1.33 LINK C DTR B 202 N DGN B 203 1555 1555 1.34 LINK C DGN B 203 N DHI B 204 1555 1555 1.34 LINK C DHI B 204 N DGL B 205 1555 1555 1.33 LINK C DGL B 205 N DAL B 206 1555 1555 1.33 LINK C DAL B 206 N DTH B 207 1555 1555 1.34 LINK C DTH B 207 N DTR B 208 1555 1555 1.34 LINK C DTR B 208 N DLY B 209 1555 1555 1.34 SITE 1 AC1 12 ASN A 23 SER A 27 TYR A 43 TRP A 79 SITE 2 AC1 12 THR A 90 TRP A 92 TRP A 108 ASP A 128 SITE 3 AC1 12 DGN B 203 DHI B 204 DGL B 205 DAL B 206 SITE 1 AC2 16 ASN A 23 SER A 27 TYR A 43 TRP A 79 SITE 2 AC2 16 THR A 90 TRP A 92 TRP A 108 TRP A 120 SITE 3 AC2 16 ASP A 128 DLE B 201 DHI B 204 DGL B 205 SITE 4 AC2 16 DAL B 206 DTH B 207 HOH B 301 HOH A 313 SITE 1 AC3 9 TRP A 120 DLE B 201 DTR B 202 DGL B 205 SITE 2 AC3 9 DAL B 206 DTH B 207 DTR B 208 HOH B 301 SITE 3 AC3 9 HOH A 313 SITE 1 AC4 10 SER A 52 TYR A 54 ARG A 84 ALA A 86 SITE 2 AC4 10 DLE B 201 DTR B 202 DGN B 203 DAL B 206 SITE 3 AC4 10 DTH B 207 DTR B 208 SITE 1 AC5 12 SER A 52 TYR A 54 TRP A 79 ARG A 84 SITE 2 AC5 12 ALA A 86 SER A 88 DLE B 201 DTR B 202 SITE 3 AC5 12 DGN B 203 DHI B 204 DTH B 207 DTR B 208 SITE 1 AC6 10 TRP A 79 ALA A 86 SER A 88 TRP A 120 SITE 2 AC6 10 DTR B 202 DGN B 203 DHI B 204 DGL B 205 SITE 3 AC6 10 DTR B 208 DLY B 209 SITE 1 AC7 11 ARG A 84 ASN A 85 ALA A 86 TRP A 120 SITE 2 AC7 11 DGN B 203 DHI B 204 DGL B 205 DAL B 206 SITE 3 AC7 11 DLY B 209 HOH B 302 HOH A 312 SITE 1 AC8 9 ARG A 84 ASN A 85 ALA A 86 DHI B 204 SITE 2 AC8 9 DGL B 205 DAL B 206 DTH B 207 HOH B 302 SITE 3 AC8 9 HOH A 312 CRYST1 57.779 57.779 84.405 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017307 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017307 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011848 0.00000