data_5N9I
# 
_entry.id   5N9I 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.391 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   5N9I         pdb_00005n9i 10.2210/pdb5n9i/pdb 
WWPDB D_1200003197 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2018-02-21 
2 'Structure model' 1 1 2018-03-07 
3 'Structure model' 1 2 2018-03-14 
4 'Structure model' 1 3 2024-05-01 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Database references'    
2 3 'Structure model' 'Database references'    
3 4 'Structure model' 'Data collection'        
4 4 'Structure model' 'Database references'    
5 4 'Structure model' 'Refinement description' 
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 2 'Structure model' citation                      
2 2 'Structure model' citation_author               
3 3 'Structure model' citation                      
4 4 'Structure model' chem_comp_atom                
5 4 'Structure model' chem_comp_bond                
6 4 'Structure model' database_2                    
7 4 'Structure model' diffrn_radiation_wavelength   
8 4 'Structure model' pdbx_initial_refinement_model 
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 2 'Structure model' '_citation.journal_abbrev'            
2 2 'Structure model' '_citation.pdbx_database_id_PubMed'   
3 2 'Structure model' '_citation.title'                     
4 2 'Structure model' '_citation_author.name'               
5 3 'Structure model' '_citation.journal_volume'            
6 3 'Structure model' '_citation.page_first'                
7 3 'Structure model' '_citation.page_last'                 
8 4 'Structure model' '_database_2.pdbx_DOI'                
9 4 'Structure model' '_database_2.pdbx_database_accession' 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.entry_id                        5N9I 
_pdbx_database_status.recvd_initial_deposition_date   2017-02-24 
_pdbx_database_status.SG_entry                        N 
_pdbx_database_status.deposit_site                    PDBE 
_pdbx_database_status.process_site                    PDBE 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
_audit_author.identifier_ORCID 
'Colletier, J.P.' 1 ? 
'Nasrallah, C.'   2 ? 
# 
_citation.abstract                  ? 
_citation.abstract_id_CAS           ? 
_citation.book_id_ISBN              ? 
_citation.book_publisher            ? 
_citation.book_publisher_city       ? 
_citation.book_title                ? 
_citation.coordinate_linkage        ? 
_citation.country                   US 
_citation.database_id_Medline       ? 
_citation.details                   ? 
_citation.id                        primary 
_citation.journal_abbrev            'Proc. Natl. Acad. Sci. U.S.A.' 
_citation.journal_id_ASTM           PNASA6 
_citation.journal_id_CSD            0040 
_citation.journal_id_ISSN           1091-6490 
_citation.journal_full              ? 
_citation.journal_issue             ? 
_citation.journal_volume            115 
_citation.language                  ? 
_citation.page_first                E2220 
_citation.page_last                 E2228 
_citation.title                     'Porin self-association enables cell-to-cell contact in' 
_citation.year                      2018 
_citation.database_id_CSD           ? 
_citation.pdbx_database_id_DOI      10.1073/pnas.1714582115 
_citation.pdbx_database_id_PubMed   29476011 
_citation.unpublished_flag          ? 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'El-Khatib, M.'    1  ? 
primary 'Nasrallah, C.'    2  ? 
primary 'Lopes, J.'        3  ? 
primary 'Tran, Q.T.'       4  ? 
primary 'Tetreau, G.'      5  ? 
primary 'Basbous, H.'      6  ? 
primary 'Fenel, D.'        7  ? 
primary 'Gallet, B.'       8  ? 
primary 'Lethier, M.'      9  ? 
primary 'Bolla, J.M.'      10 ? 
primary 'Pages, J.M.'      11 ? 
primary 'Vivaudou, M.'     12 ? 
primary 'Weik, M.'         13 ? 
primary 'Winterhalter, M.' 14 ? 
primary 'Colletier, J.P.'  15 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer syn 'Porin 1' 590.624 4  ? ? 'DIMERIZATION DOMAIN, UNP residues 228-233' ? 
2 water   nat water     18.015  18 ? ? ?                                           ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           'polypeptide(L)' 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       GVVTSE 
_entity_poly.pdbx_seq_one_letter_code_can   GVVTSE 
_entity_poly.pdbx_strand_id                 A,B,C,D 
_entity_poly.pdbx_target_identifier         ? 
# 
_pdbx_entity_nonpoly.entity_id   2 
_pdbx_entity_nonpoly.name        water 
_pdbx_entity_nonpoly.comp_id     HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 GLY n 
1 2 VAL n 
1 3 VAL n 
1 4 THR n 
1 5 SER n 
1 6 GLU n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       1 
_pdbx_entity_src_syn.pdbx_end_seq_num       6 
_pdbx_entity_src_syn.organism_scientific    'Providencia stuartii' 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       588 
_pdbx_entity_src_syn.details                ? 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4'  147.129 
GLY 'peptide linking'   y GLYCINE         ? 'C2 H5 N O2'  75.067  
HOH non-polymer         . WATER           ? 'H2 O'        18.015  
SER 'L-peptide linking' y SERINE          ? 'C3 H7 N O3'  105.093 
THR 'L-peptide linking' y THREONINE       ? 'C4 H9 N O3'  119.119 
VAL 'L-peptide linking' y VALINE          ? 'C5 H11 N O2' 117.146 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 GLY 1 1 1 GLY GLY A . n 
A 1 2 VAL 2 2 2 VAL VAL A . n 
A 1 3 VAL 3 3 3 VAL VAL A . n 
A 1 4 THR 4 4 4 THR THR A . n 
A 1 5 SER 5 5 5 SER SER A . n 
A 1 6 GLU 6 6 6 GLU GLU A . n 
B 1 1 GLY 1 1 1 GLY GLY B . n 
B 1 2 VAL 2 2 2 VAL VAL B . n 
B 1 3 VAL 3 3 3 VAL VAL B . n 
B 1 4 THR 4 4 4 THR THR B . n 
B 1 5 SER 5 5 5 SER SER B . n 
B 1 6 GLU 6 6 6 GLU GLU B . n 
C 1 1 GLY 1 1 1 GLY GLY C . n 
C 1 2 VAL 2 2 2 VAL VAL C . n 
C 1 3 VAL 3 3 3 VAL VAL C . n 
C 1 4 THR 4 4 4 THR THR C . n 
C 1 5 SER 5 5 5 SER SER C . n 
C 1 6 GLU 6 6 6 GLU GLU C . n 
D 1 1 GLY 1 1 1 GLY GLY D . n 
D 1 2 VAL 2 2 2 VAL VAL D . n 
D 1 3 VAL 3 3 3 VAL VAL D . n 
D 1 4 THR 4 4 4 THR THR D . n 
D 1 5 SER 5 5 5 SER SER D . n 
D 1 6 GLU 6 6 6 GLU GLU D . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
E 2 HOH 1 101 11 HOH HOH A . 
E 2 HOH 2 102 5  HOH HOH A . 
E 2 HOH 3 103 6  HOH HOH A . 
E 2 HOH 4 104 15 HOH HOH A . 
E 2 HOH 5 105 13 HOH HOH A . 
F 2 HOH 1 101 2  HOH HOH B . 
F 2 HOH 2 102 18 HOH HOH B . 
F 2 HOH 3 103 17 HOH HOH B . 
F 2 HOH 4 104 1  HOH HOH B . 
F 2 HOH 5 105 12 HOH HOH B . 
G 2 HOH 1 101 4  HOH HOH C . 
G 2 HOH 2 102 10 HOH HOH C . 
G 2 HOH 3 103 14 HOH HOH C . 
G 2 HOH 4 104 3  HOH HOH C . 
H 2 HOH 1 101 9  HOH HOH D . 
H 2 HOH 2 102 8  HOH HOH D . 
H 2 HOH 3 103 7  HOH HOH D . 
H 2 HOH 4 104 16 HOH HOH D . 
# 
loop_
_software.citation_id 
_software.classification 
_software.compiler_name 
_software.compiler_version 
_software.contact_author 
_software.contact_author_email 
_software.date 
_software.description 
_software.dependencies 
_software.hardware 
_software.language 
_software.location 
_software.mods 
_software.name 
_software.os 
_software.os_version 
_software.type 
_software.version 
_software.pdbx_ordinal 
? refinement       ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.7.0029 1 
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS    ? ? ? .        2 
? 'data scaling'   ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? .        3 
? phasing          ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? .        4 
# 
_cell.entry_id           5N9I 
_cell.length_a           4.800 
_cell.length_b           16.910 
_cell.length_c           45.450 
_cell.angle_alpha        90.05 
_cell.angle_beta         90.01 
_cell.angle_gamma        90.05 
_cell.Z_PDB              4 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         5N9I 
_symmetry.space_group_name_H-M             'P 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                1 
# 
_exptl.absorpt_coefficient_mu     ? 
_exptl.absorpt_correction_T_max   ? 
_exptl.absorpt_correction_T_min   ? 
_exptl.absorpt_correction_type    ? 
_exptl.absorpt_process_details    ? 
_exptl.entry_id                   5N9I 
_exptl.crystals_number            1 
_exptl.details                    ? 
_exptl.method                     'X-RAY DIFFRACTION' 
_exptl.method_details             ? 
# 
_exptl_crystal.colour                      ? 
_exptl_crystal.density_diffrn              ? 
_exptl_crystal.density_Matthews            1.62 
_exptl_crystal.density_method              ? 
_exptl_crystal.density_percent_sol         23.9 
_exptl_crystal.description                 Needles 
_exptl_crystal.F_000                       ? 
_exptl_crystal.id                          1 
_exptl_crystal.preparation                 ? 
_exptl_crystal.size_max                    ? 
_exptl_crystal.size_mid                    ? 
_exptl_crystal.size_min                    ? 
_exptl_crystal.size_rad                    ? 
_exptl_crystal.colour_lustre               ? 
_exptl_crystal.colour_modifier             ? 
_exptl_crystal.colour_primary              ? 
_exptl_crystal.density_meas                ? 
_exptl_crystal.density_meas_esd            ? 
_exptl_crystal.density_meas_gt             ? 
_exptl_crystal.density_meas_lt             ? 
_exptl_crystal.density_meas_temp           ? 
_exptl_crystal.density_meas_temp_esd       ? 
_exptl_crystal.density_meas_temp_gt        ? 
_exptl_crystal.density_meas_temp_lt        ? 
_exptl_crystal.pdbx_crystal_image_url      ? 
_exptl_crystal.pdbx_crystal_image_format   ? 
_exptl_crystal.pdbx_mosaicity              ? 
_exptl_crystal.pdbx_mosaicity_esd          ? 
# 
_exptl_crystal_grow.apparatus       ? 
_exptl_crystal_grow.atmosphere      ? 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.details         ? 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.method_ref      ? 
_exptl_crystal_grow.pH              4 
_exptl_crystal_grow.pressure        ? 
_exptl_crystal_grow.pressure_esd    ? 
_exptl_crystal_grow.seeding         ? 
_exptl_crystal_grow.seeding_ref     ? 
_exptl_crystal_grow.temp            293 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.temp_esd        ? 
_exptl_crystal_grow.time            ? 
_exptl_crystal_grow.pdbx_details    
;2.5 M AMONIUM SULFATE, 0.1 M
 ACID CITRIC PH4
;
_exptl_crystal_grow.pdbx_pH_range   4 
# 
_diffrn.ambient_environment    ? 
_diffrn.ambient_temp           100 
_diffrn.ambient_temp_details   ? 
_diffrn.ambient_temp_esd       ? 
_diffrn.crystal_id             1 
_diffrn.crystal_support        ? 
_diffrn.crystal_treatment      ? 
_diffrn.details                ? 
_diffrn.id                     1 
_diffrn.ambient_pressure       ? 
_diffrn.ambient_pressure_esd   ? 
_diffrn.ambient_pressure_gt    ? 
_diffrn.ambient_pressure_lt    ? 
_diffrn.ambient_temp_gt        ? 
_diffrn.ambient_temp_lt        ? 
# 
_diffrn_detector.details                      ? 
_diffrn_detector.detector                     CCD 
_diffrn_detector.diffrn_id                    1 
_diffrn_detector.type                         MARRESEARCH 
_diffrn_detector.area_resol_mean              ? 
_diffrn_detector.dtime                        ? 
_diffrn_detector.pdbx_frames_total            ? 
_diffrn_detector.pdbx_collection_time_total   ? 
_diffrn_detector.pdbx_collection_date         2012-11-18 
# 
_diffrn_radiation.collimation                      ? 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.filter_edge                      ? 
_diffrn_radiation.inhomogeneity                    ? 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.polarisn_norm                    ? 
_diffrn_radiation.polarisn_ratio                   ? 
_diffrn_radiation.probe                            ? 
_diffrn_radiation.type                             ? 
_diffrn_radiation.xray_symbol                      ? 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.pdbx_wavelength_list             ? 
_diffrn_radiation.pdbx_wavelength                  ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_analyzer                    ? 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   0.873 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.current                     ? 
_diffrn_source.details                     ? 
_diffrn_source.diffrn_id                   1 
_diffrn_source.power                       ? 
_diffrn_source.size                        ? 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.target                      ? 
_diffrn_source.type                        'ESRF BEAMLINE ID23-2' 
_diffrn_source.voltage                     ? 
_diffrn_source.take-off_angle              ? 
_diffrn_source.pdbx_wavelength_list        0.873 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_synchrotron_beamline   ID23-2 
_diffrn_source.pdbx_synchrotron_site       ESRF 
# 
_reflns.B_iso_Wilson_estimate            15.748 
_reflns.entry_id                         5N9I 
_reflns.data_reduction_details           ? 
_reflns.data_reduction_method            ? 
_reflns.d_resolution_high                1.91 
_reflns.d_resolution_low                 50 
_reflns.details                          ? 
_reflns.limit_h_max                      ? 
_reflns.limit_h_min                      ? 
_reflns.limit_k_max                      ? 
_reflns.limit_k_min                      ? 
_reflns.limit_l_max                      ? 
_reflns.limit_l_min                      ? 
_reflns.number_all                       ? 
_reflns.number_obs                       1076 
_reflns.observed_criterion               ? 
_reflns.observed_criterion_F_max         ? 
_reflns.observed_criterion_F_min         ? 
_reflns.observed_criterion_I_max         ? 
_reflns.observed_criterion_I_min         ? 
_reflns.observed_criterion_sigma_F       ? 
_reflns.observed_criterion_sigma_I       3.0 
_reflns.percent_possible_obs             96.66 
_reflns.R_free_details                   ? 
_reflns.Rmerge_F_all                     ? 
_reflns.Rmerge_F_obs                     ? 
_reflns.Friedel_coverage                 ? 
_reflns.number_gt                        ? 
_reflns.threshold_expression             ? 
_reflns.pdbx_redundancy                  2.20 
_reflns.pdbx_Rmerge_I_obs                0.1197 
_reflns.pdbx_Rmerge_I_all                ? 
_reflns.pdbx_Rsym_value                  ? 
_reflns.pdbx_netI_over_av_sigmaI         ? 
_reflns.pdbx_netI_over_sigmaI            4.9 
_reflns.pdbx_res_netI_over_av_sigmaI_2   ? 
_reflns.pdbx_res_netI_over_sigmaI_2      ? 
_reflns.pdbx_chi_squared                 ? 
_reflns.pdbx_scaling_rejects             ? 
_reflns.pdbx_d_res_high_opt              ? 
_reflns.pdbx_d_res_low_opt               ? 
_reflns.pdbx_d_res_opt_method            ? 
_reflns.phase_calculation_details        ? 
_reflns.pdbx_Rrim_I_all                  0.1623 
_reflns.pdbx_Rpim_I_all                  0.1088 
_reflns.pdbx_d_opt                       ? 
_reflns.pdbx_number_measured_all         ? 
_reflns.pdbx_diffrn_id                   1 
_reflns.pdbx_ordinal                     1 
_reflns.pdbx_CC_half                     0.991 
_reflns.pdbx_R_split                     ? 
# 
_reflns_shell.d_res_high                  1.91 
_reflns_shell.d_res_low                   1.979 
_reflns_shell.meanI_over_sigI_all         ? 
_reflns_shell.meanI_over_sigI_obs         3.24 
_reflns_shell.number_measured_all         ? 
_reflns_shell.number_measured_obs         ? 
_reflns_shell.number_possible             ? 
_reflns_shell.number_unique_all           ? 
_reflns_shell.number_unique_obs           122 
_reflns_shell.percent_possible_all        100 
_reflns_shell.percent_possible_obs        ? 
_reflns_shell.Rmerge_F_all                ? 
_reflns_shell.Rmerge_F_obs                ? 
_reflns_shell.Rmerge_I_all                ? 
_reflns_shell.Rmerge_I_obs                0.1879 
_reflns_shell.meanI_over_sigI_gt          ? 
_reflns_shell.meanI_over_uI_all           ? 
_reflns_shell.meanI_over_uI_gt            ? 
_reflns_shell.number_measured_gt          ? 
_reflns_shell.number_unique_gt            ? 
_reflns_shell.percent_possible_gt         ? 
_reflns_shell.Rmerge_F_gt                 ? 
_reflns_shell.Rmerge_I_gt                 ? 
_reflns_shell.pdbx_redundancy             2.2 
_reflns_shell.pdbx_Rsym_value             ? 
_reflns_shell.pdbx_chi_squared            ? 
_reflns_shell.pdbx_netI_over_sigmaI_all   ? 
_reflns_shell.pdbx_netI_over_sigmaI_obs   ? 
_reflns_shell.pdbx_Rrim_I_all             0.2535 
_reflns_shell.pdbx_Rpim_I_all             0.169 
_reflns_shell.pdbx_rejects                ? 
_reflns_shell.pdbx_ordinal                1 
_reflns_shell.pdbx_diffrn_id              1 
_reflns_shell.pdbx_CC_half                0.973 
_reflns_shell.pdbx_R_split                ? 
# 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.entry_id                                 5N9I 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.ls_number_reflns_obs                     890 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          ? 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             45.45 
_refine.ls_d_res_high                            1.91 
_refine.ls_percent_reflns_obs                    92.24 
_refine.ls_R_factor_obs                          0.15705 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       0.14735 
_refine.ls_R_factor_R_free                       0.20590 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 15.9 
_refine.ls_number_reflns_R_free                  168 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               0.975 
_refine.correlation_coeff_Fo_to_Fc_free          0.951 
_refine.B_iso_mean                               12.675 
_refine.aniso_B[1][1]                            -7.24 
_refine.aniso_B[2][2]                            24.21 
_refine.aniso_B[3][3]                            -16.97 
_refine.aniso_B[1][2]                            15.14 
_refine.aniso_B[1][3]                            -15.62 
_refine.aniso_B[2][3]                            -0.38 
_refine.solvent_model_details                    MASK 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_solvent_vdw_probe_radii             1.20 
_refine.pdbx_solvent_ion_probe_radii             0.80 
_refine.pdbx_solvent_shrinkage_radii             0.80 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.details                                  'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' 
_refine.pdbx_starting_model                      'a canonical beta-sheet' 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       'MAXIMUM LIKELIHOOD' 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       0.066 
_refine.pdbx_overall_ESU_R_Free                  0.039 
_refine.overall_SU_ML                            0.111 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_B                             4.112 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         1 
_refine_hist.pdbx_number_atoms_protein        164 
_refine_hist.pdbx_number_atoms_nucleic_acid   0 
_refine_hist.pdbx_number_atoms_ligand         0 
_refine_hist.number_atoms_solvent             18 
_refine_hist.number_atoms_total               182 
_refine_hist.d_res_high                       1.91 
_refine_hist.d_res_low                        45.45 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
r_bond_refined_d             0.018  0.020  ? 160 'X-RAY DIFFRACTION' ? 
r_bond_other_d               ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_angle_refined_deg          2.229  2.026  ? 216 'X-RAY DIFFRACTION' ? 
r_angle_other_deg            ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_dihedral_angle_1_deg       8.322  5.000  ? 20  'X-RAY DIFFRACTION' ? 
r_dihedral_angle_2_deg       56.565 30.000 ? 4   'X-RAY DIFFRACTION' ? 
r_dihedral_angle_3_deg       17.174 15.000 ? 24  'X-RAY DIFFRACTION' ? 
r_dihedral_angle_4_deg       ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_chiral_restr               0.138  0.200  ? 32  'X-RAY DIFFRACTION' ? 
r_gen_planes_refined         0.007  0.020  ? 112 'X-RAY DIFFRACTION' ? 
r_gen_planes_other           ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_nbd_refined                ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_nbd_other                  ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_nbtor_refined              ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_nbtor_other                ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_xyhbond_nbd_refined        ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_xyhbond_nbd_other          ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_metal_ion_refined          ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_metal_ion_other            ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_symmetry_vdw_refined       ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_symmetry_vdw_other         ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_symmetry_hbond_refined     ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_symmetry_hbond_other       ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_symmetry_metal_ion_refined ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_symmetry_metal_ion_other   ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_mcbond_it                  ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_mcbond_other               ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_mcangle_it                 ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_mcangle_other              ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_scbond_it                  ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_scbond_other               ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_scangle_it                 ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_scangle_other              ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_long_range_B_refined       ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_long_range_B_other         ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_rigid_bond_restr           ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_sphericity_free            ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_sphericity_bonded          ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
# 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_ls_shell.pdbx_total_number_of_bins_used   20 
_refine_ls_shell.d_res_high                       1.906 
_refine_ls_shell.d_res_low                        1.956 
_refine_ls_shell.number_reflns_R_work             88 
_refine_ls_shell.R_factor_R_work                  0.208 
_refine_ls_shell.percent_reflns_obs               96.08 
_refine_ls_shell.R_factor_R_free                  0.532 
_refine_ls_shell.R_factor_R_free_error            ? 
_refine_ls_shell.percent_reflns_R_free            ? 
_refine_ls_shell.number_reflns_R_free             10 
_refine_ls_shell.number_reflns_all                ? 
_refine_ls_shell.R_factor_all                     ? 
_refine_ls_shell.R_factor_obs                     ? 
_refine_ls_shell.number_reflns_obs                ? 
# 
_database_PDB_matrix.entry_id          5N9I 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                     5N9I 
_struct.title                        
'STRUCTURE OF 206-GVVTSE-211, THE STERIC ZIPPER THAT SUPPORTS THE SELF-ASSOCIATION OF P. STUARTII OMP-PST1 INTO DIMERS OF TRIMERS' 
_struct.pdbx_model_details           ? 
_struct.pdbx_formula_weight          ? 
_struct.pdbx_formula_weight_method   ? 
_struct.pdbx_model_type_details      ? 
_struct.pdbx_CASP_flag               N 
# 
_struct_keywords.entry_id        5N9I 
_struct_keywords.text            'STERIC-ZIPPER, PORIN, MICRO-CRYSTAL, SELF-ASSOCIATION, cell adhesion' 
_struct_keywords.pdbx_keywords   'CELL ADHESION' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 1 ? 
D N N 1 ? 
E N N 2 ? 
F N N 2 ? 
G N N 2 ? 
H N N 2 ? 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    UNP 
_struct_ref.db_code                    E3U904_PROST 
_struct_ref.pdbx_db_accession          E3U904 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_seq_one_letter_code   GVVTSE 
_struct_ref.pdbx_align_begin           228 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 5N9I A 1 ? 6 ? E3U904 228 ? 233 ? 1 6 
2 1 5N9I B 1 ? 6 ? E3U904 228 ? 233 ? 1 6 
3 1 5N9I C 1 ? 6 ? E3U904 228 ? 233 ? 1 6 
4 1 5N9I D 1 ? 6 ? E3U904 228 ? 233 ? 1 6 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              software_defined_assembly 
_pdbx_struct_assembly.method_details       PISA 
_pdbx_struct_assembly.oligomeric_details   tetrameric 
_pdbx_struct_assembly.oligomeric_count     4 
# 
loop_
_pdbx_struct_assembly_prop.biol_id 
_pdbx_struct_assembly_prop.type 
_pdbx_struct_assembly_prop.value 
_pdbx_struct_assembly_prop.details 
1 'ABSA (A^2)' 500  ? 
1 MORE         -2   ? 
1 'SSA (A^2)'  2930 ? 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F,G,H 
# 
_pdbx_struct_assembly_auth_evidence.id                     1 
_pdbx_struct_assembly_auth_evidence.assembly_id            1 
_pdbx_struct_assembly_auth_evidence.experimental_support   none 
_pdbx_struct_assembly_auth_evidence.details                ? 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_pdbx_validate_close_contact.id               1 
_pdbx_validate_close_contact.PDB_model_num    1 
_pdbx_validate_close_contact.auth_atom_id_1   OE2 
_pdbx_validate_close_contact.auth_asym_id_1   A 
_pdbx_validate_close_contact.auth_comp_id_1   GLU 
_pdbx_validate_close_contact.auth_seq_id_1    6 
_pdbx_validate_close_contact.PDB_ins_code_1   ? 
_pdbx_validate_close_contact.label_alt_id_1   ? 
_pdbx_validate_close_contact.auth_atom_id_2   OXT 
_pdbx_validate_close_contact.auth_asym_id_2   C 
_pdbx_validate_close_contact.auth_comp_id_2   GLU 
_pdbx_validate_close_contact.auth_seq_id_2    6 
_pdbx_validate_close_contact.PDB_ins_code_2   ? 
_pdbx_validate_close_contact.label_alt_id_2   ? 
_pdbx_validate_close_contact.dist             2.12 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
GLU N    N N N 1  
GLU CA   C N S 2  
GLU C    C N N 3  
GLU O    O N N 4  
GLU CB   C N N 5  
GLU CG   C N N 6  
GLU CD   C N N 7  
GLU OE1  O N N 8  
GLU OE2  O N N 9  
GLU OXT  O N N 10 
GLU H    H N N 11 
GLU H2   H N N 12 
GLU HA   H N N 13 
GLU HB2  H N N 14 
GLU HB3  H N N 15 
GLU HG2  H N N 16 
GLU HG3  H N N 17 
GLU HE2  H N N 18 
GLU HXT  H N N 19 
GLY N    N N N 20 
GLY CA   C N N 21 
GLY C    C N N 22 
GLY O    O N N 23 
GLY OXT  O N N 24 
GLY H    H N N 25 
GLY H2   H N N 26 
GLY HA2  H N N 27 
GLY HA3  H N N 28 
GLY HXT  H N N 29 
HOH O    O N N 30 
HOH H1   H N N 31 
HOH H2   H N N 32 
SER N    N N N 33 
SER CA   C N S 34 
SER C    C N N 35 
SER O    O N N 36 
SER CB   C N N 37 
SER OG   O N N 38 
SER OXT  O N N 39 
SER H    H N N 40 
SER H2   H N N 41 
SER HA   H N N 42 
SER HB2  H N N 43 
SER HB3  H N N 44 
SER HG   H N N 45 
SER HXT  H N N 46 
THR N    N N N 47 
THR CA   C N S 48 
THR C    C N N 49 
THR O    O N N 50 
THR CB   C N R 51 
THR OG1  O N N 52 
THR CG2  C N N 53 
THR OXT  O N N 54 
THR H    H N N 55 
THR H2   H N N 56 
THR HA   H N N 57 
THR HB   H N N 58 
THR HG1  H N N 59 
THR HG21 H N N 60 
THR HG22 H N N 61 
THR HG23 H N N 62 
THR HXT  H N N 63 
VAL N    N N N 64 
VAL CA   C N S 65 
VAL C    C N N 66 
VAL O    O N N 67 
VAL CB   C N N 68 
VAL CG1  C N N 69 
VAL CG2  C N N 70 
VAL OXT  O N N 71 
VAL H    H N N 72 
VAL H2   H N N 73 
VAL HA   H N N 74 
VAL HB   H N N 75 
VAL HG11 H N N 76 
VAL HG12 H N N 77 
VAL HG13 H N N 78 
VAL HG21 H N N 79 
VAL HG22 H N N 80 
VAL HG23 H N N 81 
VAL HXT  H N N 82 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GLU N   CA   sing N N 1  
GLU N   H    sing N N 2  
GLU N   H2   sing N N 3  
GLU CA  C    sing N N 4  
GLU CA  CB   sing N N 5  
GLU CA  HA   sing N N 6  
GLU C   O    doub N N 7  
GLU C   OXT  sing N N 8  
GLU CB  CG   sing N N 9  
GLU CB  HB2  sing N N 10 
GLU CB  HB3  sing N N 11 
GLU CG  CD   sing N N 12 
GLU CG  HG2  sing N N 13 
GLU CG  HG3  sing N N 14 
GLU CD  OE1  doub N N 15 
GLU CD  OE2  sing N N 16 
GLU OE2 HE2  sing N N 17 
GLU OXT HXT  sing N N 18 
GLY N   CA   sing N N 19 
GLY N   H    sing N N 20 
GLY N   H2   sing N N 21 
GLY CA  C    sing N N 22 
GLY CA  HA2  sing N N 23 
GLY CA  HA3  sing N N 24 
GLY C   O    doub N N 25 
GLY C   OXT  sing N N 26 
GLY OXT HXT  sing N N 27 
HOH O   H1   sing N N 28 
HOH O   H2   sing N N 29 
SER N   CA   sing N N 30 
SER N   H    sing N N 31 
SER N   H2   sing N N 32 
SER CA  C    sing N N 33 
SER CA  CB   sing N N 34 
SER CA  HA   sing N N 35 
SER C   O    doub N N 36 
SER C   OXT  sing N N 37 
SER CB  OG   sing N N 38 
SER CB  HB2  sing N N 39 
SER CB  HB3  sing N N 40 
SER OG  HG   sing N N 41 
SER OXT HXT  sing N N 42 
THR N   CA   sing N N 43 
THR N   H    sing N N 44 
THR N   H2   sing N N 45 
THR CA  C    sing N N 46 
THR CA  CB   sing N N 47 
THR CA  HA   sing N N 48 
THR C   O    doub N N 49 
THR C   OXT  sing N N 50 
THR CB  OG1  sing N N 51 
THR CB  CG2  sing N N 52 
THR CB  HB   sing N N 53 
THR OG1 HG1  sing N N 54 
THR CG2 HG21 sing N N 55 
THR CG2 HG22 sing N N 56 
THR CG2 HG23 sing N N 57 
THR OXT HXT  sing N N 58 
VAL N   CA   sing N N 59 
VAL N   H    sing N N 60 
VAL N   H2   sing N N 61 
VAL CA  C    sing N N 62 
VAL CA  CB   sing N N 63 
VAL CA  HA   sing N N 64 
VAL C   O    doub N N 65 
VAL C   OXT  sing N N 66 
VAL CB  CG1  sing N N 67 
VAL CB  CG2  sing N N 68 
VAL CB  HB   sing N N 69 
VAL CG1 HG11 sing N N 70 
VAL CG1 HG12 sing N N 71 
VAL CG1 HG13 sing N N 72 
VAL CG2 HG21 sing N N 73 
VAL CG2 HG22 sing N N 74 
VAL CG2 HG23 sing N N 75 
VAL OXT HXT  sing N N 76 
# 
_pdbx_audit_support.funding_organization   'French National Research Agency' 
_pdbx_audit_support.country                France 
_pdbx_audit_support.grant_number           ANR-15-CE18-0005-02 
_pdbx_audit_support.ordinal                1 
# 
_pdbx_initial_refinement_model.accession_code   ? 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             other 
_pdbx_initial_refinement_model.source_name      ? 
_pdbx_initial_refinement_model.details          'a canonical beta-sheet' 
# 
loop_
_pdbx_reflns_twin.domain_id 
_pdbx_reflns_twin.crystal_id 
_pdbx_reflns_twin.diffrn_id 
_pdbx_reflns_twin.type 
_pdbx_reflns_twin.operator 
_pdbx_reflns_twin.fraction 
1 1 1 ? 'H, K, L'   0.298 
2 1 1 ? -h,-k,l     0.198 
3 1 1 ? h,-k,-l     0.288 
4 1 1 ? '-H, K, -L' 0.216 
# 
_atom_sites.entry_id                    5N9I 
_atom_sites.fract_transf_matrix[1][1]   0.208333 
_atom_sites.fract_transf_matrix[1][2]   0.000182 
_atom_sites.fract_transf_matrix[1][3]   0.000029 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.059137 
_atom_sites.fract_transf_matrix[2][3]   0.000046 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.022002 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
N 
O 
# 
loop_