HEADER TRANSFERASE 25-FEB-17 5N9M TITLE CRYSTAL STRUCTURE OF GATD - A GLUTAMINE AMIDOTRANSFERASE FROM TITLE 2 STAPHYLOCOCCUS AUREUS INVOLVED IN PEPTIDOGLYCAN AMIDATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: COBYRIC ACID SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS COL; SOURCE 3 ORGANISM_TAXID: 93062; SOURCE 4 GENE: SACOL1950; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLUTAMINE AMIDOTRANSFERASE PEPTIDOGLYCAN AMIDATION MULTIDRUG KEYWDS 2 RESISTANCE STAPHYLOCCOCUS AUREUS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.LEISICO,D.VIEIRA,M.R.ROMAO,J.TRINCAO,T.SANTOS-SILVA REVDAT 5 08-MAY-24 5N9M 1 REMARK REVDAT 4 10-JUL-19 5N9M 1 REMARK REVDAT 3 20-FEB-19 5N9M 1 REMARK LINK REVDAT 2 11-APR-18 5N9M 1 JRNL REVDAT 1 14-MAR-18 5N9M 0 JRNL AUTH F.LEISICO,D.V.VIEIRA,T.A.FIGUEIREDO,M.SILVA,E.J.CABRITA, JRNL AUTH 2 R.G.SOBRAL,A.M.LUDOVICE,J.TRINCAO,M.J.ROMAO,H.DE LENCASTRE, JRNL AUTH 3 T.SANTOS-SILVA JRNL TITL FIRST INSIGHTS OF PEPTIDOGLYCAN AMIDATION IN GRAM-POSITIVE JRNL TITL 2 BACTERIA - THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF JRNL TITL 3 STAPHYLOCOCCUS AUREUS GLUTAMINE AMIDOTRANSFERASE GATD. JRNL REF SCI REP V. 8 5313 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29593310 JRNL DOI 10.1038/S41598-018-22986-3 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 42922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2169 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.4418 - 4.5598 1.00 2976 164 0.1379 0.1571 REMARK 3 2 4.5598 - 3.6203 1.00 2828 156 0.1164 0.1519 REMARK 3 3 3.6203 - 3.1629 1.00 2824 139 0.1352 0.1727 REMARK 3 4 3.1629 - 2.8739 1.00 2798 139 0.1529 0.1816 REMARK 3 5 2.8739 - 2.6680 1.00 2759 149 0.1573 0.2004 REMARK 3 6 2.6680 - 2.5107 1.00 2767 157 0.1551 0.1886 REMARK 3 7 2.5107 - 2.3850 1.00 2756 158 0.1462 0.1956 REMARK 3 8 2.3850 - 2.2812 1.00 2755 136 0.1450 0.1880 REMARK 3 9 2.2812 - 2.1934 1.00 2742 144 0.1487 0.2095 REMARK 3 10 2.1934 - 2.1177 1.00 2752 120 0.1516 0.1887 REMARK 3 11 2.1177 - 2.0515 1.00 2742 158 0.1625 0.2150 REMARK 3 12 2.0515 - 1.9929 0.98 2712 130 0.1742 0.2036 REMARK 3 13 1.9929 - 1.9404 0.95 2558 139 0.1903 0.2280 REMARK 3 14 1.9404 - 1.8931 0.90 2466 147 0.2215 0.2786 REMARK 3 15 1.8931 - 1.8500 0.85 2318 133 0.2590 0.3332 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3991 REMARK 3 ANGLE : 0.994 5378 REMARK 3 CHIRALITY : 0.038 579 REMARK 3 PLANARITY : 0.005 710 REMARK 3 DIHEDRAL : 12.862 1521 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6695 79.3922 86.5353 REMARK 3 T TENSOR REMARK 3 T11: 0.1882 T22: 0.3114 REMARK 3 T33: 0.1687 T12: 0.0584 REMARK 3 T13: -0.0246 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.9458 L22: 6.2796 REMARK 3 L33: 5.4503 L12: 0.8812 REMARK 3 L13: 1.0182 L23: 4.2193 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: -0.1976 S13: -0.1837 REMARK 3 S21: 0.3242 S22: 0.1220 S23: -0.2844 REMARK 3 S31: 0.3531 S32: 0.3189 S33: -0.1769 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0232 84.5644 87.4109 REMARK 3 T TENSOR REMARK 3 T11: 0.1887 T22: 0.2960 REMARK 3 T33: 0.1361 T12: 0.0388 REMARK 3 T13: -0.0678 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 0.7779 L22: 2.7836 REMARK 3 L33: 0.9931 L12: 1.2385 REMARK 3 L13: -0.7616 L23: -0.7583 REMARK 3 S TENSOR REMARK 3 S11: 0.0757 S12: -0.2514 S13: -0.0813 REMARK 3 S21: 0.0351 S22: 0.0325 S23: -0.2689 REMARK 3 S31: 0.1763 S32: 0.3239 S33: -0.0703 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5721 80.5065 82.1255 REMARK 3 T TENSOR REMARK 3 T11: 0.1508 T22: 0.1914 REMARK 3 T33: 0.1297 T12: -0.0000 REMARK 3 T13: -0.0114 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.7490 L22: 2.7042 REMARK 3 L33: 2.6386 L12: -0.2875 REMARK 3 L13: -0.6791 L23: 1.8011 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: -0.1775 S13: -0.0949 REMARK 3 S21: 0.2140 S22: -0.0496 S23: 0.1086 REMARK 3 S31: 0.1928 S32: -0.1280 S33: 0.0466 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5848 69.4517 70.0624 REMARK 3 T TENSOR REMARK 3 T11: 0.1898 T22: 0.1707 REMARK 3 T33: 0.2504 T12: -0.0455 REMARK 3 T13: 0.0437 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 3.0238 L22: 5.9903 REMARK 3 L33: 6.4306 L12: 1.0180 REMARK 3 L13: 0.5026 L23: 3.2933 REMARK 3 S TENSOR REMARK 3 S11: -0.0413 S12: -0.0027 S13: -0.5090 REMARK 3 S21: 0.0618 S22: -0.2753 S23: 0.4057 REMARK 3 S31: 0.5946 S32: -0.6114 S33: 0.2196 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 196 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0118 77.5826 65.8998 REMARK 3 T TENSOR REMARK 3 T11: 0.1579 T22: 0.1654 REMARK 3 T33: 0.1453 T12: 0.0154 REMARK 3 T13: -0.0077 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.5984 L22: 1.4011 REMARK 3 L33: 0.6763 L12: -0.1586 REMARK 3 L13: -0.1456 L23: 0.1648 REMARK 3 S TENSOR REMARK 3 S11: -0.0053 S12: 0.0002 S13: -0.1088 REMARK 3 S21: 0.0105 S22: -0.0144 S23: -0.0213 REMARK 3 S31: 0.0440 S32: 0.0398 S33: 0.0105 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 197 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6904 93.1136 79.4904 REMARK 3 T TENSOR REMARK 3 T11: 0.1857 T22: 0.2176 REMARK 3 T33: 0.2072 T12: -0.0414 REMARK 3 T13: 0.0059 T23: -0.0523 REMARK 3 L TENSOR REMARK 3 L11: 3.9239 L22: 3.1752 REMARK 3 L33: 1.3936 L12: -1.2533 REMARK 3 L13: 0.9627 L23: 0.8232 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: -0.1071 S13: 0.4402 REMARK 3 S21: 0.0582 S22: 0.0666 S23: -0.2036 REMARK 3 S31: -0.2377 S32: 0.2756 S33: -0.0717 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3740 75.1022 63.2884 REMARK 3 T TENSOR REMARK 3 T11: 0.1625 T22: 0.3251 REMARK 3 T33: 0.2850 T12: 0.0218 REMARK 3 T13: 0.0090 T23: -0.0510 REMARK 3 L TENSOR REMARK 3 L11: 3.4234 L22: 7.5203 REMARK 3 L33: 2.7651 L12: 1.1480 REMARK 3 L13: -1.3303 L23: 2.0204 REMARK 3 S TENSOR REMARK 3 S11: -0.3173 S12: 0.1543 S13: -0.3593 REMARK 3 S21: -0.1780 S22: 0.3052 S23: -0.1390 REMARK 3 S31: 0.0380 S32: -0.0792 S33: -0.0358 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2540 77.7238 109.4336 REMARK 3 T TENSOR REMARK 3 T11: 0.3443 T22: 0.2355 REMARK 3 T33: 0.2518 T12: 0.0947 REMARK 3 T13: 0.0755 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.7814 L22: 3.7793 REMARK 3 L33: 0.7040 L12: 0.3555 REMARK 3 L13: -0.6701 L23: -0.9688 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: -0.0237 S13: -0.3149 REMARK 3 S21: -0.1429 S22: 0.0310 S23: -0.1123 REMARK 3 S31: 0.9464 S32: 0.2838 S33: -0.5095 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9242 80.7730 112.2489 REMARK 3 T TENSOR REMARK 3 T11: 0.2743 T22: 0.2949 REMARK 3 T33: 0.3139 T12: 0.1330 REMARK 3 T13: 0.0343 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.9361 L22: 4.9668 REMARK 3 L33: 2.3112 L12: 1.5415 REMARK 3 L13: 0.7788 L23: 0.7418 REMARK 3 S TENSOR REMARK 3 S11: -0.0973 S12: -0.1831 S13: -0.2770 REMARK 3 S21: 0.1844 S22: 0.0542 S23: -0.4159 REMARK 3 S31: 0.3251 S32: 0.5267 S33: 0.0328 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6500 75.8347 115.5500 REMARK 3 T TENSOR REMARK 3 T11: 0.4115 T22: 0.1885 REMARK 3 T33: 0.2934 T12: 0.0479 REMARK 3 T13: 0.0368 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 1.3739 L22: 2.5380 REMARK 3 L33: 2.7310 L12: 0.2277 REMARK 3 L13: -0.0128 L23: -1.9333 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: -0.1235 S13: -0.5533 REMARK 3 S21: 0.1509 S22: 0.0904 S23: -0.0219 REMARK 3 S31: 0.7212 S32: -0.0666 S33: -0.1002 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4189 78.3476 114.1010 REMARK 3 T TENSOR REMARK 3 T11: 0.2255 T22: 0.1464 REMARK 3 T33: 0.2263 T12: -0.0250 REMARK 3 T13: 0.0898 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 3.7310 L22: 2.9943 REMARK 3 L33: 3.1379 L12: 1.8448 REMARK 3 L13: 1.6466 L23: -0.5303 REMARK 3 S TENSOR REMARK 3 S11: -0.0624 S12: -0.0278 S13: -0.2542 REMARK 3 S21: 0.1039 S22: -0.0663 S23: 0.0475 REMARK 3 S31: 0.5949 S32: -0.4263 S33: 0.0306 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1653 86.4939 107.9662 REMARK 3 T TENSOR REMARK 3 T11: 0.2539 T22: 0.2252 REMARK 3 T33: 0.1733 T12: -0.0907 REMARK 3 T13: 0.0273 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 3.1206 L22: 2.1928 REMARK 3 L33: 2.0092 L12: 0.1440 REMARK 3 L13: 0.7105 L23: 0.4111 REMARK 3 S TENSOR REMARK 3 S11: -0.2236 S12: 0.1520 S13: -0.1482 REMARK 3 S21: -0.1666 S22: 0.0742 S23: 0.1985 REMARK 3 S31: 0.5703 S32: -0.3657 S33: -0.1183 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 196 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3598 96.4765 106.9561 REMARK 3 T TENSOR REMARK 3 T11: 0.1577 T22: 0.1403 REMARK 3 T33: 0.1471 T12: 0.0095 REMARK 3 T13: 0.0062 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.7584 L22: 1.0539 REMARK 3 L33: 2.0150 L12: 0.1640 REMARK 3 L13: -0.5648 L23: 0.0521 REMARK 3 S TENSOR REMARK 3 S11: -0.0453 S12: 0.0816 S13: -0.0164 REMARK 3 S21: -0.0445 S22: 0.0239 S23: 0.0218 REMARK 3 S31: 0.0374 S32: -0.0484 S33: 0.0263 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 197 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0515 90.1195 119.4162 REMARK 3 T TENSOR REMARK 3 T11: 0.2000 T22: 0.4011 REMARK 3 T33: 0.2499 T12: 0.0626 REMARK 3 T13: -0.0270 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 1.7995 L22: 2.0832 REMARK 3 L33: 0.4695 L12: -0.5430 REMARK 3 L13: 0.5313 L23: 0.6067 REMARK 3 S TENSOR REMARK 3 S11: -0.0843 S12: -0.3207 S13: 0.0546 REMARK 3 S21: 0.2270 S22: -0.0300 S23: -0.3795 REMARK 3 S31: 0.1951 S32: 0.7895 S33: 0.1172 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8945 102.3549 98.9712 REMARK 3 T TENSOR REMARK 3 T11: 0.2596 T22: 0.2168 REMARK 3 T33: 0.2428 T12: -0.0357 REMARK 3 T13: 0.0679 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 5.4518 L22: 6.4800 REMARK 3 L33: 7.7838 L12: -3.7576 REMARK 3 L13: 3.7139 L23: -5.0891 REMARK 3 S TENSOR REMARK 3 S11: -0.1069 S12: 0.2607 S13: -0.1173 REMARK 3 S21: -0.5152 S22: -0.1974 S23: -0.3181 REMARK 3 S31: 0.5845 S32: 0.4287 S33: 0.3424 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N9M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003673. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42987 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 36.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 21.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 2.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 20.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30%(W/V) PEG 400, 100 MM SODIUM REMARK 280 ACETATE/ ACETIC ACID PH 4.5, 200 MM CALCIUM ACETATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.30500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.04000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.96000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.04000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.30500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.96000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 240 REMARK 465 LYS B 241 REMARK 465 SER B 242 REMARK 465 ARG B 243 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 46 HZ3 LYS B 75 1.53 REMARK 500 NH2 ARG A 243 O HOH A 401 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 123 NH1 ARG A 243 4466 0.56 REMARK 500 CD GLU A 123 NH1 ARG A 243 4466 1.49 REMARK 500 OE1 GLU A 123 CZ ARG A 243 4466 1.88 REMARK 500 O HOH A 676 O HOH B 521 2574 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 94 -113.97 49.54 REMARK 500 ASN A 148 67.05 -164.73 REMARK 500 LYS A 181 -115.85 51.00 REMARK 500 CYS B 94 -112.46 48.83 REMARK 500 ASN B 148 72.01 -161.74 REMARK 500 LYS B 181 -117.11 51.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 752 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 753 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A 754 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH B 570 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B 571 DISTANCE = 6.91 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 302 DBREF1 5N9M A 1 243 UNP A0A0H2WZ38_STAAC DBREF2 5N9M A A0A0H2WZ38 1 243 DBREF1 5N9M B 1 243 UNP A0A0H2WZ38_STAAC DBREF2 5N9M B A0A0H2WZ38 1 243 SEQRES 1 A 243 MET HIS GLU LEU THR ILE TYR HIS PHE MET SER ASP LYS SEQRES 2 A 243 LEU ASN LEU TYR SER ASP ILE GLY ASN ILE ILE ALA LEU SEQRES 3 A 243 ARG GLN ARG ALA LYS LYS ARG ASN ILE LYS VAL ASN VAL SEQRES 4 A 243 VAL GLU ILE ASN GLU THR GLU GLY ILE THR PHE ASP GLU SEQRES 5 A 243 CYS ASP ILE PHE PHE ILE GLY GLY GLY SER ASP ARG GLU SEQRES 6 A 243 GLN ALA LEU ALA THR LYS GLU LEU SER LYS ILE LYS THR SEQRES 7 A 243 PRO LEU LYS GLU ALA ILE GLU ASP GLY MET PRO GLY LEU SEQRES 8 A 243 THR ILE CYS GLY GLY TYR GLN PHE LEU GLY LYS LYS TYR SEQRES 9 A 243 ILE THR PRO ASP GLY THR GLU LEU GLU GLY LEU GLY ILE SEQRES 10 A 243 LEU ASP PHE TYR THR GLU SER LYS THR ASN ARG LEU THR SEQRES 11 A 243 GLY ASP ILE VAL ILE GLU SER ASP THR PHE GLY THR ILE SEQRES 12 A 243 VAL GLY PHE GLU ASN HIS GLY GLY ARG THR TYR HIS ASP SEQRES 13 A 243 PHE GLY THR LEU GLY HIS VAL THR PHE GLY TYR GLY ASN SEQRES 14 A 243 ASN ASP GLU ASP LYS LYS GLU GLY ILE HIS TYR LYS ASN SEQRES 15 A 243 LEU LEU GLY THR TYR LEU HIS GLY PRO ILE LEU PRO LYS SEQRES 16 A 243 ASN TYR GLU ILE THR ASP TYR LEU LEU GLU LYS ALA CYS SEQRES 17 A 243 GLU ARG LYS GLY ILE PRO PHE GLU PRO LYS GLU ILE ASP SEQRES 18 A 243 ASN GLU ALA GLU ILE GLN ALA LYS GLN VAL LEU ILE ASP SEQRES 19 A 243 ARG ALA ASN ARG GLN LYS LYS SER ARG SEQRES 1 B 243 MET HIS GLU LEU THR ILE TYR HIS PHE MET SER ASP LYS SEQRES 2 B 243 LEU ASN LEU TYR SER ASP ILE GLY ASN ILE ILE ALA LEU SEQRES 3 B 243 ARG GLN ARG ALA LYS LYS ARG ASN ILE LYS VAL ASN VAL SEQRES 4 B 243 VAL GLU ILE ASN GLU THR GLU GLY ILE THR PHE ASP GLU SEQRES 5 B 243 CYS ASP ILE PHE PHE ILE GLY GLY GLY SER ASP ARG GLU SEQRES 6 B 243 GLN ALA LEU ALA THR LYS GLU LEU SER LYS ILE LYS THR SEQRES 7 B 243 PRO LEU LYS GLU ALA ILE GLU ASP GLY MET PRO GLY LEU SEQRES 8 B 243 THR ILE CYS GLY GLY TYR GLN PHE LEU GLY LYS LYS TYR SEQRES 9 B 243 ILE THR PRO ASP GLY THR GLU LEU GLU GLY LEU GLY ILE SEQRES 10 B 243 LEU ASP PHE TYR THR GLU SER LYS THR ASN ARG LEU THR SEQRES 11 B 243 GLY ASP ILE VAL ILE GLU SER ASP THR PHE GLY THR ILE SEQRES 12 B 243 VAL GLY PHE GLU ASN HIS GLY GLY ARG THR TYR HIS ASP SEQRES 13 B 243 PHE GLY THR LEU GLY HIS VAL THR PHE GLY TYR GLY ASN SEQRES 14 B 243 ASN ASP GLU ASP LYS LYS GLU GLY ILE HIS TYR LYS ASN SEQRES 15 B 243 LEU LEU GLY THR TYR LEU HIS GLY PRO ILE LEU PRO LYS SEQRES 16 B 243 ASN TYR GLU ILE THR ASP TYR LEU LEU GLU LYS ALA CYS SEQRES 17 B 243 GLU ARG LYS GLY ILE PRO PHE GLU PRO LYS GLU ILE ASP SEQRES 18 B 243 ASN GLU ALA GLU ILE GLN ALA LYS GLN VAL LEU ILE ASP SEQRES 19 B 243 ARG ALA ASN ARG GLN LYS LYS SER ARG HET GLN A 301 20 HET PG4 A 302 31 HETNAM GLN GLUTAMINE HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 3 GLN C5 H10 N2 O3 FORMUL 4 PG4 C8 H18 O5 FORMUL 5 HOH *625(H2 O) HELIX 1 AA1 ASP A 19 LYS A 32 1 14 HELIX 2 AA2 SER A 62 SER A 74 1 13 HELIX 3 AA3 ILE A 76 GLY A 87 1 12 HELIX 4 AA4 CYS A 94 PHE A 99 1 6 HELIX 5 AA5 ILE A 192 LYS A 195 5 4 HELIX 6 AA6 ASN A 196 GLY A 212 1 17 HELIX 7 AA7 ASN A 222 GLN A 239 1 18 HELIX 8 AA8 ASP B 19 LYS B 32 1 14 HELIX 9 AA9 SER B 62 SER B 74 1 13 HELIX 10 AB1 ILE B 76 GLY B 87 1 12 HELIX 11 AB2 CYS B 94 PHE B 99 1 6 HELIX 12 AB3 ILE B 192 LYS B 195 5 4 HELIX 13 AB4 ASN B 196 GLY B 212 1 17 HELIX 14 AB5 ASN B 222 ASN B 237 1 16 SHEET 1 AA1 6 ILE A 35 ILE A 42 0 SHEET 2 AA1 6 HIS A 2 PHE A 9 1 N ILE A 6 O VAL A 40 SHEET 3 AA1 6 ILE A 55 ILE A 58 1 O ILE A 55 N TYR A 7 SHEET 4 AA1 6 GLY A 90 ILE A 93 1 O ILE A 93 N ILE A 58 SHEET 5 AA1 6 LEU A 183 THR A 186 1 O LEU A 184 N GLY A 90 SHEET 6 AA1 6 ILE A 178 TYR A 180 -1 N TYR A 180 O LEU A 183 SHEET 1 AA2 4 GLU A 111 GLU A 113 0 SHEET 2 AA2 4 LYS A 103 ILE A 105 -1 N TYR A 104 O LEU A 112 SHEET 3 AA2 4 TYR A 121 SER A 137 1 O THR A 122 N ILE A 105 SHEET 4 AA2 4 GLY A 141 TYR A 154 -1 O ARG A 152 N GLU A 123 SHEET 1 AA3 5 GLU A 111 GLU A 113 0 SHEET 2 AA3 5 LYS A 103 ILE A 105 -1 N TYR A 104 O LEU A 112 SHEET 3 AA3 5 TYR A 121 SER A 137 1 O THR A 122 N ILE A 105 SHEET 4 AA3 5 GLY A 161 PHE A 165 -1 O HIS A 162 N GLU A 136 SHEET 5 AA3 5 LYS A 175 GLU A 176 -1 O GLU A 176 N GLY A 161 SHEET 1 AA4 6 ILE B 35 ILE B 42 0 SHEET 2 AA4 6 HIS B 2 PHE B 9 1 N ILE B 6 O VAL B 40 SHEET 3 AA4 6 ILE B 55 ILE B 58 1 O ILE B 55 N TYR B 7 SHEET 4 AA4 6 GLY B 90 ILE B 93 1 O ILE B 93 N ILE B 58 SHEET 5 AA4 6 LEU B 183 THR B 186 1 O LEU B 184 N GLY B 90 SHEET 6 AA4 6 ILE B 178 TYR B 180 -1 N TYR B 180 O LEU B 183 SHEET 1 AA5 4 GLU B 111 GLU B 113 0 SHEET 2 AA5 4 LYS B 103 ILE B 105 -1 N TYR B 104 O LEU B 112 SHEET 3 AA5 4 TYR B 121 SER B 137 1 O SER B 124 N ILE B 105 SHEET 4 AA5 4 GLY B 141 TYR B 154 -1 O HIS B 149 N LEU B 129 SHEET 1 AA6 5 GLU B 111 GLU B 113 0 SHEET 2 AA6 5 LYS B 103 ILE B 105 -1 N TYR B 104 O LEU B 112 SHEET 3 AA6 5 TYR B 121 SER B 137 1 O SER B 124 N ILE B 105 SHEET 4 AA6 5 GLY B 161 PHE B 165 -1 O HIS B 162 N GLU B 136 SHEET 5 AA6 5 LYS B 175 GLU B 176 -1 O GLU B 176 N GLY B 161 CISPEP 1 GLU A 216 PRO A 217 0 -5.58 CISPEP 2 GLY B 190 PRO B 191 0 3.45 CISPEP 3 GLU B 216 PRO B 217 0 -3.76 SITE 1 AC1 11 TYR A 17 ARG A 128 HOH A 402 HOH A 414 SITE 2 AC1 11 HOH A 450 HOH A 459 HOH A 502 HOH A 547 SITE 3 AC1 11 HOH A 549 ARG B 235 ARG B 238 SITE 1 AC2 8 GLU A 85 GLY A 87 LYS A 181 HOH A 406 SITE 2 AC2 8 HOH A 545 GLU B 85 LYS B 181 ASN B 182 CRYST1 48.610 93.920 110.080 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020572 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009084 0.00000