HEADER VIRAL PROTEIN 27-FEB-17 5NA2 TITLE CRYSTAL STRUCTURE OF THE FULL-LENGTH FELINE IMMUNODEFICIENCY VIRUS TITLE 2 CAPSID PROTEIN UNVEILS ORIGINAL FEATURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN (P24); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FELINE IMMUNODEFICIENCY VIRUS (ISOLATE SOURCE 3 PETALUMA); SOURCE 4 ORGANISM_COMMON: FIV; SOURCE 5 ORGANISM_TAXID: 11674; SOURCE 6 GENE: GAG; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: PLYSS KEYWDS FIV, CAPSID, P24, CA, FELINE IMMUNODEFICIENCY VIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.FOLIO,N.SIERRA,M.DUJARDIN,G.ALVAREZ,C.GUILLON REVDAT 3 17-JAN-24 5NA2 1 JRNL REVDAT 2 06-DEC-17 5NA2 1 JRNL REVDAT 1 15-NOV-17 5NA2 0 JRNL AUTH C.FOLIO,N.SIERRA,M.DUJARDIN,G.ALVAREZ,C.GUILLON JRNL TITL CRYSTAL STRUCTURE OF THE FULL-LENGTH FELINE IMMUNODEFICIENCY JRNL TITL 2 VIRUS CAPSID PROTEIN SHOWS AN N-TERMINAL BETA-HAIRPIN IN THE JRNL TITL 3 ABSENCE OF N-TERMINAL PROLINE. JRNL REF VIRUSES V. 9 2017 JRNL REFN ESSN 1999-4915 JRNL PMID 29120364 JRNL DOI 10.3390/V9110335 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 58094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2904 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.5094 - 4.6049 0.87 2532 134 0.2020 0.2226 REMARK 3 2 4.6049 - 3.6560 0.87 2491 131 0.1573 0.2089 REMARK 3 3 3.6560 - 3.1941 0.90 2551 134 0.1781 0.2212 REMARK 3 4 3.1941 - 2.9022 0.91 2591 137 0.1814 0.2203 REMARK 3 5 2.9022 - 2.6942 0.90 2563 135 0.1929 0.2574 REMARK 3 6 2.6942 - 2.5354 0.93 2646 139 0.1937 0.2281 REMARK 3 7 2.5354 - 2.4084 0.93 2599 137 0.1843 0.2214 REMARK 3 8 2.4084 - 2.3036 0.93 2653 139 0.1888 0.2380 REMARK 3 9 2.3036 - 2.2149 0.92 2587 137 0.1981 0.2704 REMARK 3 10 2.2149 - 2.1385 0.91 2583 136 0.1857 0.2450 REMARK 3 11 2.1385 - 2.0717 0.94 2661 140 0.1889 0.2303 REMARK 3 12 2.0717 - 2.0124 0.95 2676 140 0.2054 0.2663 REMARK 3 13 2.0124 - 1.9595 0.95 2681 142 0.2144 0.2606 REMARK 3 14 1.9595 - 1.9117 0.95 2684 141 0.2314 0.2828 REMARK 3 15 1.9117 - 1.8682 0.96 2707 142 0.2451 0.2763 REMARK 3 16 1.8682 - 1.8284 0.90 2551 133 0.2988 0.3489 REMARK 3 17 1.8284 - 1.7919 0.93 2604 137 0.3307 0.3710 REMARK 3 18 1.7919 - 1.7581 0.96 2704 142 0.3414 0.4171 REMARK 3 19 1.7581 - 1.7267 0.95 2700 142 0.3081 0.2931 REMARK 3 20 1.7267 - 1.6974 0.96 2690 142 0.3183 0.3427 REMARK 3 21 1.6974 - 1.6700 0.97 2736 144 0.3370 0.3347 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3391 REMARK 3 ANGLE : 0.888 4584 REMARK 3 CHIRALITY : 0.044 508 REMARK 3 PLANARITY : 0.006 598 REMARK 3 DIHEDRAL : 14.207 2121 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NA2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003758. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99187 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39411 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 59.719 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : 2.380 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03540 REMARK 200 FOR THE DATA SET : 16.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.02580 REMARK 200 FOR SHELL : 3.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2XGU (N-TERMINAL DOMAIN) AND 5DCK (C-TERMINAL REMARK 200 DOMAIN) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM SULFATE, 20% PEG 4000, REMARK 280 10% GLYCEROL, 10% DMSO, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.09500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.29000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.09500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.29000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 701 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 212 REMARK 465 ILE A 213 REMARK 465 GLU B 212 REMARK 465 ILE B 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 168 O HOH B 401 1.92 REMARK 500 NH1 ARG A 208 O HOH A 401 1.98 REMARK 500 OD2 ASP B 165 O HOH B 402 2.00 REMARK 500 NZ LYS A 136 O HOH A 402 2.02 REMARK 500 O PRO B 199 O HOH B 403 2.02 REMARK 500 O HOH A 511 O HOH A 610 2.03 REMARK 500 O HOH A 427 O HOH A 579 2.06 REMARK 500 O HOH B 402 O HOH B 599 2.07 REMARK 500 O HOH B 604 O HOH B 681 2.07 REMARK 500 O HOH B 659 O HOH B 674 2.08 REMARK 500 O HOH B 630 O HOH B 681 2.08 REMARK 500 O HOH B 458 O HOH B 610 2.09 REMARK 500 O HOH A 632 O HOH A 678 2.09 REMARK 500 O HOH A 680 O HOH A 717 2.11 REMARK 500 O HOH A 617 O HOH A 637 2.11 REMARK 500 O HOH B 631 O HOH B 708 2.12 REMARK 500 O GLN A 179 O HOH A 403 2.12 REMARK 500 O HOH A 418 O HOH A 682 2.12 REMARK 500 O HOH A 409 O HOH A 690 2.12 REMARK 500 O HOH B 474 O HOH B 685 2.13 REMARK 500 O HOH A 573 O HOH A 678 2.13 REMARK 500 OE2 GLU A 66 O HOH A 404 2.13 REMARK 500 O HOH B 563 O HOH B 651 2.15 REMARK 500 O HOH A 420 O HOH A 609 2.15 REMARK 500 O HOH B 458 O HOH B 670 2.15 REMARK 500 O HOH A 659 O HOH A 676 2.15 REMARK 500 O HOH A 424 O HOH A 583 2.15 REMARK 500 O HOH B 522 O HOH B 614 2.16 REMARK 500 O HOH A 425 O HOH A 683 2.16 REMARK 500 O HOH B 666 O HOH B 734 2.17 REMARK 500 O HOH A 608 O HOH A 618 2.17 REMARK 500 O HOH B 417 O HOH B 619 2.17 REMARK 500 O HOH B 427 O HOH B 610 2.17 REMARK 500 NH2 ARG B 146 O HOH B 404 2.18 REMARK 500 O HOH A 420 O HOH A 640 2.18 REMARK 500 OE1 GLN A 144 O HOH A 405 2.18 REMARK 500 O HOH A 647 O HOH B 685 2.18 REMARK 500 O HOH A 404 O HOH A 424 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLN B 74 O HOH B 401 2656 2.03 REMARK 500 O HOH A 457 O HOH B 648 4555 2.06 REMARK 500 O HOH A 417 O HOH B 654 4555 2.10 REMARK 500 O HOH A 715 O HOH B 626 4555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 190 CA - CB - SG ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 210 75.59 -102.70 REMARK 500 SER B 139 57.39 -141.94 REMARK 500 HIS B 196 5.22 81.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 730 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 731 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 732 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 733 DISTANCE = 7.88 ANGSTROMS REMARK 525 HOH A 734 DISTANCE = 7.95 ANGSTROMS REMARK 525 HOH A 735 DISTANCE = 8.22 ANGSTROMS REMARK 525 HOH A 736 DISTANCE = 8.29 ANGSTROMS REMARK 525 HOH A 737 DISTANCE = 8.51 ANGSTROMS REMARK 525 HOH A 738 DISTANCE = 8.83 ANGSTROMS REMARK 525 HOH A 739 DISTANCE = 10.30 ANGSTROMS REMARK 525 HOH B 744 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH B 745 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B 746 DISTANCE = 6.58 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 301 DBREF 5NA2 A 1 213 UNP P16087 GAG_FIVPE 136 348 DBREF 5NA2 B 1 213 UNP P16087 GAG_FIVPE 136 348 SEQADV 5NA2 THR A 1 UNP P16087 PRO 136 ENGINEERED MUTATION SEQADV 5NA2 THR B 1 UNP P16087 PRO 136 ENGINEERED MUTATION SEQRES 1 A 213 THR ILE GLN THR VAL ASN GLY VAL PRO GLN TYR VAL ALA SEQRES 2 A 213 LEU ASP PRO LYS MET VAL SER ILE PHE MET GLU LYS ALA SEQRES 3 A 213 ARG GLU GLY LEU GLY GLY GLU GLU VAL GLN LEU TRP PHE SEQRES 4 A 213 THR ALA PHE SER ALA ASN LEU THR PRO THR ASP MET ALA SEQRES 5 A 213 THR LEU ILE MET ALA ALA PRO GLY CYS ALA ALA ASP LYS SEQRES 6 A 213 GLU ILE LEU ASP GLU SER LEU LYS GLN LEU THR ALA GLU SEQRES 7 A 213 TYR ASP ARG THR HIS PRO PRO ASP ALA PRO ARG PRO LEU SEQRES 8 A 213 PRO TYR PHE THR ALA ALA GLU ILE MET GLY ILE GLY LEU SEQRES 9 A 213 THR GLN GLU GLN GLN ALA GLU ALA ARG PHE ALA PRO ALA SEQRES 10 A 213 ARG MET GLN CYS ARG ALA TRP TYR LEU GLU ALA LEU GLY SEQRES 11 A 213 LYS LEU ALA ALA ILE LYS ALA LYS SER PRO ARG ALA VAL SEQRES 12 A 213 GLN LEU ARG GLN GLY ALA LYS GLU ASP TYR SER SER PHE SEQRES 13 A 213 ILE ASP ARG LEU PHE ALA GLN ILE ASP GLN GLU GLN ASN SEQRES 14 A 213 THR ALA GLU VAL LYS LEU TYR LEU LYS GLN SER LEU SER SEQRES 15 A 213 ILE ALA ASN ALA ASN ALA ASP CYS LYS LYS ALA MET SER SEQRES 16 A 213 HIS LEU LYS PRO GLU SER THR LEU GLU GLU LYS LEU ARG SEQRES 17 A 213 ALA CYS GLN GLU ILE SEQRES 1 B 213 THR ILE GLN THR VAL ASN GLY VAL PRO GLN TYR VAL ALA SEQRES 2 B 213 LEU ASP PRO LYS MET VAL SER ILE PHE MET GLU LYS ALA SEQRES 3 B 213 ARG GLU GLY LEU GLY GLY GLU GLU VAL GLN LEU TRP PHE SEQRES 4 B 213 THR ALA PHE SER ALA ASN LEU THR PRO THR ASP MET ALA SEQRES 5 B 213 THR LEU ILE MET ALA ALA PRO GLY CYS ALA ALA ASP LYS SEQRES 6 B 213 GLU ILE LEU ASP GLU SER LEU LYS GLN LEU THR ALA GLU SEQRES 7 B 213 TYR ASP ARG THR HIS PRO PRO ASP ALA PRO ARG PRO LEU SEQRES 8 B 213 PRO TYR PHE THR ALA ALA GLU ILE MET GLY ILE GLY LEU SEQRES 9 B 213 THR GLN GLU GLN GLN ALA GLU ALA ARG PHE ALA PRO ALA SEQRES 10 B 213 ARG MET GLN CYS ARG ALA TRP TYR LEU GLU ALA LEU GLY SEQRES 11 B 213 LYS LEU ALA ALA ILE LYS ALA LYS SER PRO ARG ALA VAL SEQRES 12 B 213 GLN LEU ARG GLN GLY ALA LYS GLU ASP TYR SER SER PHE SEQRES 13 B 213 ILE ASP ARG LEU PHE ALA GLN ILE ASP GLN GLU GLN ASN SEQRES 14 B 213 THR ALA GLU VAL LYS LEU TYR LEU LYS GLN SER LEU SER SEQRES 15 B 213 ILE ALA ASN ALA ASN ALA ASP CYS LYS LYS ALA MET SER SEQRES 16 B 213 HIS LEU LYS PRO GLU SER THR LEU GLU GLU LYS LEU ARG SEQRES 17 B 213 ALA CYS GLN GLU ILE HET GOL A 301 6 HET GOL A 302 6 HET GOL A 303 6 HET GOL A 304 6 HET GOL A 305 6 HET GOL B 301 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 6(C3 H8 O3) FORMUL 9 HOH *678(H2 O) HELIX 1 AA1 ASP A 15 ALA A 26 1 12 HELIX 2 AA2 GLU A 34 SER A 43 1 10 HELIX 3 AA3 ALA A 44 LEU A 46 5 3 HELIX 4 AA4 THR A 47 ALA A 57 1 11 HELIX 5 AA5 ALA A 62 HIS A 83 1 22 HELIX 6 AA6 THR A 95 MET A 100 1 6 HELIX 7 AA7 THR A 105 ALA A 110 1 6 HELIX 8 AA8 GLU A 111 ARG A 113 5 3 HELIX 9 AA9 PHE A 114 ALA A 134 1 21 HELIX 10 AB1 SER A 139 GLN A 144 1 6 HELIX 11 AB2 ASP A 152 GLN A 168 1 17 HELIX 12 AB3 THR A 170 ASN A 185 1 16 HELIX 13 AB4 ASN A 187 MET A 194 1 8 HELIX 14 AB5 THR A 202 CYS A 210 1 9 HELIX 15 AB6 ASP B 15 ALA B 26 1 12 HELIX 16 AB7 GLU B 34 SER B 43 1 10 HELIX 17 AB8 ALA B 44 LEU B 46 5 3 HELIX 18 AB9 THR B 47 ALA B 57 1 11 HELIX 19 AC1 ALA B 62 HIS B 83 1 22 HELIX 20 AC2 THR B 95 MET B 100 1 6 HELIX 21 AC3 THR B 105 ALA B 110 1 6 HELIX 22 AC4 GLU B 111 ARG B 113 5 3 HELIX 23 AC5 PHE B 114 ALA B 134 1 21 HELIX 24 AC6 ILE B 135 LYS B 138 5 4 HELIX 25 AC7 SER B 139 GLN B 144 1 6 HELIX 26 AC8 ASP B 152 GLU B 167 1 16 HELIX 27 AC9 THR B 170 ASN B 185 1 16 HELIX 28 AD1 ASN B 187 MET B 194 1 8 HELIX 29 AD2 THR B 202 CYS B 210 1 9 SHEET 1 AA1 2 ILE A 2 VAL A 5 0 SHEET 2 AA1 2 VAL A 8 TYR A 11 -1 O GLN A 10 N GLN A 3 SHEET 1 AA2 2 ILE B 2 VAL B 5 0 SHEET 2 AA2 2 VAL B 8 TYR B 11 -1 O VAL B 8 N VAL B 5 SSBOND 1 CYS A 61 CYS B 61 1555 1555 2.05 SSBOND 2 CYS A 190 CYS A 210 1555 1555 2.05 SSBOND 3 CYS B 190 CYS B 210 1555 1555 2.05 CISPEP 1 ARG A 89 PRO A 90 0 -8.27 CISPEP 2 ARG B 89 PRO B 90 0 -0.40 SITE 1 AC1 3 THR A 4 MET B 119 GLN B 120 SITE 1 AC2 5 GLN A 74 THR A 170 GOL A 305 HOH A 421 SITE 2 AC2 5 HOH A 434 SITE 1 AC3 4 ASP A 15 MET A 18 HOH A 508 HOH A 561 SITE 1 AC4 3 GLN A 106 HOH A 575 HIS B 196 SITE 1 AC5 9 GLU A 70 LYS A 73 GLN A 74 ASN A 169 SITE 2 AC5 9 THR A 170 ALA A 171 LYS A 174 GOL A 302 SITE 3 AC5 9 HOH A 566 SITE 1 AC6 8 THR A 202 LEU A 203 THR B 202 LEU B 203 SITE 2 AC6 8 HOH B 459 HOH B 479 HOH B 506 HOH B 583 CRYST1 122.190 74.580 77.000 90.00 128.68 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008184 0.000000 0.006552 0.00000 SCALE2 0.000000 0.013408 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016636 0.00000