HEADER HYDROLASE 28-FEB-17 5NAI TITLE MONO-ZINC VIM-5 METALLO-BETA-LACTAMASE IN COMPLEX WITH (1-CHLORO-4- TITLE 2 HYDROXYISOQUINOLINE-3-CARBONYL)-D-TRYPTOPHAN (COMPOUND 1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLASS B METALLO-BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: META-BETA-CARBAPENEM,METALLO-BETA-LACTAMASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLAVIM-5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: OPEN VECTOR BASED KEYWDS METALLO-BETA-LACTAMASE, INHIBITOR, COMPLEX, ANTIBIOTIC RESISTANCE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.-B.LI,J.BREM,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 3 17-JAN-24 5NAI 1 LINK REVDAT 2 07-JUN-17 5NAI 1 JRNL SEQRES REVDAT 1 17-MAY-17 5NAI 0 JRNL AUTH G.B.LI,J.BREM,R.LESNIAK,M.I.ABBOUD,C.T.LOHANS,I.J.CLIFTON, JRNL AUTH 2 S.Y.YANG,J.C.JIMENEZ-CASTELLANOS,M.B.AVISON,J.SPENCER, JRNL AUTH 3 M.A.MCDONOUGH,C.J.SCHOFIELD JRNL TITL CRYSTALLOGRAPHIC ANALYSES OF ISOQUINOLINE COMPLEXES REVEAL A JRNL TITL 2 NEW MODE OF METALLO-BETA-LACTAMASE INHIBITION. JRNL REF CHEM. COMMUN. (CAMB.) V. 53 5806 2017 JRNL REFN ESSN 1364-548X JRNL PMID 28470248 JRNL DOI 10.1039/C7CC02394D REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 3.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 72606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.141 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.690 REMARK 3 FREE R VALUE TEST SET COUNT : 1950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5907 -8.7043 7.9717 REMARK 3 T TENSOR REMARK 3 T11: 0.1295 T22: 0.1942 REMARK 3 T33: 0.2021 T12: -0.0222 REMARK 3 T13: 0.0266 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 1.6840 L22: 5.4287 REMARK 3 L33: 2.3244 L12: 0.0023 REMARK 3 L13: -0.6496 L23: 0.9514 REMARK 3 S TENSOR REMARK 3 S11: -0.0187 S12: -0.0128 S13: -0.1282 REMARK 3 S21: 0.1436 S22: -0.1506 S23: 0.4382 REMARK 3 S31: 0.1928 S32: -0.2449 S33: 0.1708 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9208 -5.8246 2.4834 REMARK 3 T TENSOR REMARK 3 T11: 0.0906 T22: 0.1083 REMARK 3 T33: 0.1137 T12: -0.0070 REMARK 3 T13: -0.0014 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.4389 L22: 2.9584 REMARK 3 L33: 1.9457 L12: -0.3464 REMARK 3 L13: -0.1421 L23: -0.5263 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: 0.0536 S13: 0.0064 REMARK 3 S21: -0.0035 S22: 0.0266 S23: 0.0655 REMARK 3 S31: 0.0543 S32: -0.0409 S33: 0.0053 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3756 -8.5000 -3.4842 REMARK 3 T TENSOR REMARK 3 T11: 0.1323 T22: 0.1820 REMARK 3 T33: 0.1676 T12: -0.0296 REMARK 3 T13: 0.0006 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 4.3679 L22: 4.9219 REMARK 3 L33: 2.0851 L12: -3.7134 REMARK 3 L13: 0.4436 L23: 0.3361 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: 0.0739 S13: -0.2794 REMARK 3 S21: 0.0285 S22: -0.0030 S23: 0.3859 REMARK 3 S31: 0.1009 S32: -0.2881 S33: 0.0189 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1708 -2.0654 -4.4392 REMARK 3 T TENSOR REMARK 3 T11: 0.1345 T22: 0.1376 REMARK 3 T33: 0.1311 T12: -0.0030 REMARK 3 T13: 0.0037 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.1012 L22: 1.0267 REMARK 3 L33: 1.1096 L12: 0.3718 REMARK 3 L13: 0.0342 L23: -0.0082 REMARK 3 S TENSOR REMARK 3 S11: -0.0346 S12: 0.0998 S13: -0.0366 REMARK 3 S21: -0.0636 S22: 0.0480 S23: -0.0627 REMARK 3 S31: 0.0350 S32: 0.0192 S33: -0.0185 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7989 5.1313 4.2613 REMARK 3 T TENSOR REMARK 3 T11: 0.1239 T22: 0.1333 REMARK 3 T33: 0.1365 T12: -0.0069 REMARK 3 T13: 0.0031 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.9852 L22: 0.7674 REMARK 3 L33: 2.2592 L12: 0.5551 REMARK 3 L13: 0.6182 L23: -0.3496 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: -0.0561 S13: 0.1297 REMARK 3 S21: 0.0426 S22: 0.0303 S23: -0.0724 REMARK 3 S31: -0.0845 S32: 0.0887 S33: 0.0513 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8267 -1.1496 11.4556 REMARK 3 T TENSOR REMARK 3 T11: 0.1464 T22: 0.1347 REMARK 3 T33: 0.1355 T12: 0.0020 REMARK 3 T13: 0.0066 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.0390 L22: 0.6975 REMARK 3 L33: 1.7524 L12: 0.8026 REMARK 3 L13: 0.0649 L23: -0.3174 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: -0.0599 S13: 0.0247 REMARK 3 S21: 0.1270 S22: -0.0124 S23: -0.0695 REMARK 3 S31: 0.0115 S32: 0.0592 S33: 0.0220 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3094 3.9938 15.6001 REMARK 3 T TENSOR REMARK 3 T11: 0.1874 T22: 0.2006 REMARK 3 T33: 0.1740 T12: -0.0369 REMARK 3 T13: -0.0143 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 8.1002 L22: 2.5916 REMARK 3 L33: 3.0756 L12: -4.4302 REMARK 3 L13: -0.8703 L23: 1.1494 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: -0.4469 S13: 0.4453 REMARK 3 S21: 0.3295 S22: -0.0184 S23: -0.4088 REMARK 3 S31: -0.1656 S32: 0.2257 S33: 0.0905 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0371 1.8969 14.2338 REMARK 3 T TENSOR REMARK 3 T11: 0.1489 T22: 0.1747 REMARK 3 T33: 0.1525 T12: 0.0100 REMARK 3 T13: 0.0057 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 1.7313 L22: 5.3095 REMARK 3 L33: 1.8613 L12: 1.3160 REMARK 3 L13: 0.0794 L23: 0.7314 REMARK 3 S TENSOR REMARK 3 S11: 0.0727 S12: -0.2577 S13: 0.2513 REMARK 3 S21: 0.1736 S22: -0.0638 S23: 0.1628 REMARK 3 S31: -0.1010 S32: -0.1178 S33: 0.0046 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7447 -3.4645 21.5780 REMARK 3 T TENSOR REMARK 3 T11: 0.1683 T22: 0.1671 REMARK 3 T33: 0.1193 T12: -0.0055 REMARK 3 T13: 0.0035 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 5.9621 L22: 4.7285 REMARK 3 L33: 5.8957 L12: -0.2974 REMARK 3 L13: 1.5625 L23: -0.9166 REMARK 3 S TENSOR REMARK 3 S11: 0.0714 S12: -0.2115 S13: -0.0628 REMARK 3 S21: 0.0675 S22: -0.1617 S23: -0.2484 REMARK 3 S31: 0.2106 S32: 0.2433 S33: 0.0911 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NAI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003776. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74624 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 5A87 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM FLUORIDE, 0.1 M BIS-TRIS REMARK 280 PROPANE, 20% (W/V) POLYETHYLENE GLYCOL 3350, PH=8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.77750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 LYS A 3 REMARK 465 VAL A 4 REMARK 465 ILE A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 VAL A 10 REMARK 465 TYR A 11 REMARK 465 MET A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 VAL A 16 REMARK 465 MET A 17 REMARK 465 ALA A 18 REMARK 465 VAL A 19 REMARK 465 ALA A 20 REMARK 465 SER A 21 REMARK 465 PRO A 22 REMARK 465 LEU A 23 REMARK 465 ALA A 24 REMARK 465 HIS A 25 REMARK 465 SER A 26 REMARK 465 GLY A 27 REMARK 465 GLU A 28 REMARK 465 PRO A 29 REMARK 465 SER A 30 REMARK 465 ARG A 262 REMARK 465 SER A 263 REMARK 465 VAL A 264 REMARK 465 ALA A 265 REMARK 465 GLU A 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 31 N REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 LYS A 128 CE NZ REMARK 470 ASN A 210 CB CG OD1 ND2 REMARK 470 LYS A 228 CE NZ REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 LYS A 260 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 416 O HOH A 544 1.91 REMARK 500 OE2 GLU A 218 O HOH A 401 2.00 REMARK 500 O HOH A 416 O HOH A 591 2.10 REMARK 500 O ASN A 261 O HOH A 402 2.11 REMARK 500 NH1 ARG A 225 O HOH A 401 2.11 REMARK 500 O HOH A 607 O HOH A 619 2.13 REMARK 500 O HOH A 646 O HOH A 662 2.16 REMARK 500 O HOH A 491 O HOH A 653 2.17 REMARK 500 OD1 CSD A 198 F F A 306 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 145.13 74.94 REMARK 500 TRP A 87 62.87 68.48 REMARK 500 ALA A 178 -107.25 -151.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 116 ND1 99.8 REMARK 620 3 HIS A 179 NE2 103.1 105.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 CSD A 198 SG 117.4 REMARK 620 3 HIS A 240 NE2 95.6 89.2 REMARK 620 4 HOH A 553 O 78.5 163.5 84.9 REMARK 620 5 HOH A 573 O 144.1 97.7 92.0 67.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 93W A 304 O13 REMARK 620 2 93W A 304 O11 87.7 REMARK 620 3 HOH A 460 O 94.8 90.9 REMARK 620 4 HOH A 508 O 85.8 96.5 172.6 REMARK 620 5 HOH A 523 O 169.6 92.4 95.6 83.9 REMARK 620 6 HOH A 546 O 91.3 178.3 87.9 84.7 88.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 93W A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F A 307 DBREF 5NAI A 1 266 UNP Q8GKX2 Q8GKX2_KLEPN 1 266 SEQRES 1 A 266 MET LEU LYS VAL ILE SER SER LEU LEU VAL TYR MET THR SEQRES 2 A 266 ALA SER VAL MET ALA VAL ALA SER PRO LEU ALA HIS SER SEQRES 3 A 266 GLY GLU PRO SER GLY GLU TYR PRO THR VAL ASN GLU ILE SEQRES 4 A 266 PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP GLY SEQRES 5 A 266 VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY ALA SEQRES 6 A 266 VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY ASP SEQRES 7 A 266 GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS ASN SEQRES 8 A 266 THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE GLY SEQRES 9 A 266 LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS ASP SEQRES 10 A 266 ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG LYS ALA GLY SEQRES 11 A 266 VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU ALA SEQRES 12 A 266 GLU ALA GLU GLY ASN GLU ILE PRO THR HIS SER LEU GLU SEQRES 13 A 266 GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY PRO SEQRES 14 A 266 VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR ASP SEQRES 15 A 266 ASN LEU VAL VAL TYR VAL PRO SER ALA ASN VAL LEU TYR SEQRES 16 A 266 GLY GLY CSD ALA VAL LEU ALA LEU SER ARG THR SER ALA SEQRES 17 A 266 GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO THR SEQRES 18 A 266 SER VAL GLU ARG ILE GLN LYS HIS TYR PRO GLU ALA GLU SEQRES 19 A 266 VAL VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU ASP SEQRES 20 A 266 LEU LEU GLN HIS THR ALA ASN VAL VAL THR ALA HIS LYS SEQRES 21 A 266 ASN ARG SER VAL ALA GLU MODRES 5NAI CSD A 198 CYS MODIFIED RESIDUE HET CSD A 198 8 HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET 93W A 304 29 HET GOL A 305 6 HET F A 306 1 HET F A 307 1 HETNAM CSD 3-SULFINOALANINE HETNAM ZN ZINC ION HETNAM 93W (2~{R})-2-[(1-CHLORANYL-4-OXIDANYL-ISOQUINOLIN-3-YL) HETNAM 2 93W CARBONYLAMINO]-3-(1~{H}-INDOL-3-YL)PROPANOIC ACID HETNAM GOL GLYCEROL HETNAM F FLUORIDE ION HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSD C3 H7 N O4 S FORMUL 2 ZN 3(ZN 2+) FORMUL 5 93W C21 H16 CL N3 O4 FORMUL 6 GOL C3 H8 O3 FORMUL 7 F 2(F 1-) FORMUL 9 HOH *278(H2 O) HELIX 1 AA1 THR A 35 ILE A 39 5 5 HELIX 2 AA2 GLY A 88 ILE A 103 1 16 HELIX 3 AA3 HIS A 116 GLY A 121 1 6 HELIX 4 AA4 GLY A 122 ALA A 129 1 8 HELIX 5 AA5 SER A 136 GLY A 147 1 12 HELIX 6 AA6 CSD A 198 VAL A 200 5 3 HELIX 7 AA7 GLU A 218 TYR A 230 1 13 HELIX 8 AA8 LEU A 246 ASN A 261 1 16 SHEET 1 AA1 7 ARG A 45 ALA A 50 0 SHEET 2 AA1 7 VAL A 53 PHE A 62 -1 O ILE A 57 N ARG A 45 SHEET 3 AA1 7 ALA A 65 ASP A 76 -1 O ALA A 65 N PHE A 62 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O ILE A 83 N LEU A 72 SHEET 5 AA1 7 VAL A 107 VAL A 111 1 O ARG A 109 N LEU A 82 SHEET 6 AA1 7 ALA A 132 ALA A 135 1 O ALA A 132 N ALA A 110 SHEET 7 AA1 7 HIS A 153 SER A 154 1 O HIS A 153 N THR A 133 SHEET 1 AA2 5 ALA A 164 PHE A 167 0 SHEET 2 AA2 5 VAL A 170 PHE A 173 -1 O LEU A 172 N VAL A 165 SHEET 3 AA2 5 VAL A 185 VAL A 188 -1 O TYR A 187 N GLU A 171 SHEET 4 AA2 5 VAL A 193 GLY A 197 -1 O TYR A 195 N VAL A 186 SHEET 5 AA2 5 VAL A 235 PRO A 238 1 O VAL A 235 N LEU A 194 LINK C GLY A 197 N ACSD A 198 1555 1555 1.33 LINK C ACSD A 198 N ALA A 199 1555 1555 1.33 LINK NE2AHIS A 114 ZN ZN A 301 1555 1555 2.03 LINK ND1 HIS A 116 ZN ZN A 301 1555 1555 2.04 LINK OD2 ASP A 118 ZN A ZN A 302 1555 1555 2.03 LINK NE2 HIS A 179 ZN ZN A 301 1555 1555 1.96 LINK SG ACSD A 198 ZN A ZN A 302 1555 1555 2.53 LINK NE2 HIS A 240 ZN A ZN A 302 1555 1555 2.14 LINK ZN A ZN A 302 O AHOH A 553 1555 1555 2.51 LINK ZN A ZN A 302 O AHOH A 573 1555 1555 2.43 LINK ZN ZN A 303 O13 93W A 304 1555 1555 1.97 LINK ZN ZN A 303 O11 93W A 304 1555 1555 1.89 LINK ZN ZN A 303 O HOH A 460 1555 1555 2.12 LINK ZN ZN A 303 O HOH A 508 1555 1555 2.32 LINK ZN ZN A 303 O HOH A 523 1555 1555 2.04 LINK ZN ZN A 303 O HOH A 546 1555 1555 2.06 SITE 1 AC1 6 HIS A 114 HIS A 116 HIS A 179 CSD A 198 SITE 2 AC1 6 ZN A 302 F A 306 SITE 1 AC2 8 ASP A 118 CSD A 198 CYS A 198 HIS A 240 SITE 2 AC2 8 ZN A 301 F A 306 HOH A 553 HOH A 573 SITE 1 AC3 5 93W A 304 HOH A 460 HOH A 508 HOH A 523 SITE 2 AC3 5 HOH A 546 SITE 1 AC4 14 TYR A 67 SER A 204 ARG A 205 THR A 206 SITE 2 AC4 14 SER A 207 GLY A 209 HIS A 240 ZN A 303 SITE 3 AC4 14 HOH A 460 HOH A 496 HOH A 508 HOH A 523 SITE 4 AC4 14 HOH A 546 HOH A 550 SITE 1 AC5 5 GLN A 60 ASP A 117 HOH A 425 HOH A 470 SITE 2 AC5 5 HOH A 533 SITE 1 AC6 8 HIS A 114 HIS A 116 ASP A 118 HIS A 179 SITE 2 AC6 8 CSD A 198 ZN A 301 ZN A 302 HOH A 573 SITE 1 AC7 5 HIS A 114 ARG A 119 CYS A 198 CSD A 198 SITE 2 AC7 5 HOH A 454 CRYST1 39.553 67.555 40.093 90.00 92.66 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025283 0.000000 0.001175 0.00000 SCALE2 0.000000 0.014803 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024969 0.00000