HEADER SIGNALING PROTEIN 28-FEB-17 5NAM TITLE NMR STRUCTURE OF TLR4 TRANSMEMBRANE DOMAIN (624-670) IN DMPG/DHPC TITLE 2 BICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLL-LIKE RECEPTOR 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 623-670; COMPND 5 SYNONYM: HTOLL; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TLR4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL23 KEYWDS TOLL-LIKE RECEPTOR, PROTEIN RECEPTOR, TRANSMEMBRANE DOMAIN, PROTEIN, KEYWDS 2 SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR K.S.MINEEV,S.A.GONCHARUK,M.V.GONCHARUK,A.S.ARSENIEV REVDAT 3 19-JUN-24 5NAM 1 REMARK REVDAT 2 08-MAY-19 5NAM 1 REMARK REVDAT 1 06-SEP-17 5NAM 0 JRNL AUTH K.S.MINEEV,S.A.GONCHARUK,M.V.GONCHARUK,P.E.VOLYNSKY, JRNL AUTH 2 E.V.NOVIKOVA,A.S.ARESINEV JRNL TITL SPATIAL STRUCTURE OF TLR4 TRANSMEMBRANE DOMAIN IN BICELLES JRNL TITL 2 PROVIDES THE INSIGHT INTO THE RECEPTOR ACTIVATION MECHANISM. JRNL REF SCI REP V. 7 6864 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28761155 JRNL DOI 10.1038/S41598-017-07250-4 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.97 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NAM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003790. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] TLR4-TM, REMARK 210 71 MM DHPC, 29 MM DMPG, 10 MM REMARK 210 IMIDAZOLE, 0.01 % SODIUM AZIDE, REMARK 210 90% H2O/10% D2O; 0.5 MM [U-13C; REMARK 210 U-15N] TLR4-TM, 71 MM DHPC, 29 REMARK 210 MM DMPC, 10 MM IMIDAZOLE, 0.01 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 0.5 MM [U-13C; U-15N] TLR4-TM, REMARK 210 50 MM [U-2H] DPC, 10 MM REMARK 210 IMIDAZOLE, 0.01 % SODIUM AZIDE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HNCO; 3D HN(CO)CA; 3D HCCH-TOCSY; REMARK 210 3D HCCH-COSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.9.1, TOPSPIN 3.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 4 46.76 -162.01 REMARK 500 1 SER A 5 -168.79 -105.78 REMARK 500 2 ASN A 2 50.65 -109.99 REMARK 500 2 ILE A 3 -179.39 -56.45 REMARK 500 2 THR A 4 46.92 -177.24 REMARK 500 2 GLN A 6 51.47 -97.91 REMARK 500 2 ILE A 43 75.95 -101.02 REMARK 500 3 ASN A 2 45.10 -97.25 REMARK 500 3 ILE A 3 177.84 -54.86 REMARK 500 3 THR A 4 106.45 -178.52 REMARK 500 3 GLN A 6 40.29 -102.93 REMARK 500 4 ASN A 2 49.91 -107.29 REMARK 500 4 GLN A 6 41.23 -100.76 REMARK 500 5 ASN A 2 42.10 -104.18 REMARK 500 5 THR A 4 69.94 178.90 REMARK 500 6 ILE A 3 172.19 -51.95 REMARK 500 7 THR A 4 90.74 -161.96 REMARK 500 7 LYS A 44 170.64 -54.44 REMARK 500 8 GLN A 6 36.05 -95.47 REMARK 500 9 ASN A 2 70.22 59.51 REMARK 500 9 SER A 5 -168.57 -160.93 REMARK 500 9 GLN A 6 35.48 -94.94 REMARK 500 9 ARG A 47 -68.63 -101.54 REMARK 500 10 ASN A 2 81.22 -170.37 REMARK 500 10 THR A 4 108.65 -165.02 REMARK 500 10 SER A 5 -167.91 -165.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34108 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF TLR4 TRANSMEMBRANE DOMAIN (624-670) IN DMPG/DHPC REMARK 900 BICELLES DBREF 5NAM A 1 48 UNP O00206 TLR4_HUMAN 623 670 SEQADV 5NAM MET A 1 UNP O00206 LEU 623 CONFLICT SEQADV 5NAM SER A 5 UNP O00206 CYS 627 CONFLICT SEQRES 1 A 48 MET ASN ILE THR SER GLN MET ASN LYS THR ILE ILE GLY SEQRES 2 A 48 VAL SER VAL LEU SER VAL LEU VAL VAL SER VAL VAL ALA SEQRES 3 A 48 VAL LEU VAL TYR LYS PHE TYR PHE HIS LEU MET LEU LEU SEQRES 4 A 48 ALA GLY CYS ILE LYS TYR GLY ARG GLY HELIX 1 AA1 MET A 7 GLY A 41 1 35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1