HEADER RNA 01-MAR-17 5NB9 TITLE STRUCTURE OF THE N-TERMINAL DOMAIN OF THE ESCHERICHIA COLI PROQ RNA TITLE 2 BINDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA CHAPERONE PROQ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O45:K1 (STRAIN S88 / EXPEC); SOURCE 3 ORGANISM_TAXID: 585035; SOURCE 4 STRAIN: S88 / EXPEC; SOURCE 5 GENE: PROQ, ECS88_1884; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PROQ-NTD-PET-DUET KEYWDS FINO, PROQ, RNA, CHAPERONE EXPDTA SOLUTION NMR NUMMDL 17 AUTHOR G.GONZALES,S.HARDWICK,S.MASLEN,M.SKEHEL,E.HOLMQVIST,J.VOGEL, AUTHOR 2 A.BATEMAN,B.LUISI,R.BROADHURST REVDAT 4 19-JUN-24 5NB9 1 REMARK REVDAT 3 08-MAY-19 5NB9 1 REMARK REVDAT 2 30-AUG-17 5NB9 1 REMARK REVDAT 1 03-MAY-17 5NB9 0 JRNL AUTH G.M.GONZALEZ,S.W.HARDWICK,S.L.MASLEN,J.M.SKEHEL,E.HOLMQVIST, JRNL AUTH 2 J.VOGEL,A.BATEMAN,B.F.LUISI,R.W.BROADHURST JRNL TITL STRUCTURE OF THE ESCHERICHIA COLI PROQ RNA-BINDING PROTEIN. JRNL REF RNA V. 23 696 2017 JRNL REFN ESSN 1469-9001 JRNL PMID 28193673 JRNL DOI 10.1261/RNA.060343.116 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3, CNS 1.3 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SEE NOTE ABOVE ABOUT USE OF RECOORD REMARK 3 REFINEMENT PROTOCOL REMARK 4 REMARK 4 5NB9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003753. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 150; 150 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 20 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 1 MM TCEP, REMARK 210 0.0025 % 3,3,3- REMARK 210 TRIMETHYLSILYLPROPIONATE, 90% REMARK 210 H2O/10% D2O; 20 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 1 MM TCEP, 0.0025 % 3, REMARK 210 3,3-TRIMETHYLSILYLPROPIONATE, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-15N TOCSY; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HNCO; 3D HCCH-TOCSY; 3D REMARK 210 1H-13C NOESY; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2.4 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 17 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 56 H VAL A 60 1.56 REMARK 500 HH21 ARG A 34 OE2 GLU A 63 1.57 REMARK 500 HZ3 LYS A 115 OE2 GLU A 119 1.59 REMARK 500 HZ1 LYS A 121 OE2 GLU A 130 1.59 REMARK 500 O ASP A 96 H ASP A 98 1.60 REMARK 500 HH22 ARG A 83 O ALA A 133 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 GLY A 43 N GLY A 43 CA -0.094 REMARK 500 1 PHE A 53 CG PHE A 53 CD1 -0.123 REMARK 500 1 PHE A 53 C PHE A 53 O -0.125 REMARK 500 1 LEU A 56 N LEU A 56 CA -0.128 REMARK 500 1 LEU A 56 CA LEU A 56 C -0.168 REMARK 500 1 VAL A 60 CB VAL A 60 CG1 -0.158 REMARK 500 1 ALA A 61 C GLY A 62 N -0.156 REMARK 500 1 SER A 73 CA SER A 73 CB -0.106 REMARK 500 1 GLY A 91 C ALA A 92 N -0.144 REMARK 500 1 GLN A 127 N GLN A 127 CA -0.123 REMARK 500 2 GLY A 43 N GLY A 43 CA -0.120 REMARK 500 2 PHE A 53 CG PHE A 53 CD1 -0.120 REMARK 500 2 PHE A 53 C PHE A 53 O -0.124 REMARK 500 2 LEU A 56 N LEU A 56 CA -0.135 REMARK 500 2 LEU A 56 CA LEU A 56 C -0.157 REMARK 500 2 LEU A 56 C LEU A 56 O -0.124 REMARK 500 2 VAL A 60 CB VAL A 60 CG1 -0.180 REMARK 500 2 ALA A 61 C GLY A 62 N -0.176 REMARK 500 2 SER A 73 CA SER A 73 CB -0.109 REMARK 500 2 TRP A 82 CB TRP A 82 CG -0.115 REMARK 500 2 GLY A 91 C ALA A 92 N -0.147 REMARK 500 2 LEU A 117 N LEU A 117 CA -0.123 REMARK 500 2 LEU A 117 CA LEU A 117 CB -0.143 REMARK 500 3 GLY A 43 N GLY A 43 CA -0.107 REMARK 500 3 PHE A 53 CG PHE A 53 CD2 -0.118 REMARK 500 3 PHE A 53 C PHE A 53 O -0.117 REMARK 500 3 ALA A 61 CA ALA A 61 CB -0.190 REMARK 500 3 ALA A 61 C GLY A 62 N -0.155 REMARK 500 3 ASN A 65 N ASN A 65 CA -0.128 REMARK 500 3 SER A 73 CA SER A 73 CB -0.092 REMARK 500 3 GLY A 91 C ALA A 92 N -0.155 REMARK 500 3 LEU A 117 N LEU A 117 CA -0.126 REMARK 500 3 GLN A 127 N GLN A 127 CA -0.139 REMARK 500 4 GLY A 43 N GLY A 43 CA -0.094 REMARK 500 4 PHE A 53 CG PHE A 53 CD2 -0.124 REMARK 500 4 PHE A 53 C PHE A 53 O -0.117 REMARK 500 4 LEU A 56 N LEU A 56 CA -0.121 REMARK 500 4 VAL A 60 CB VAL A 60 CG1 -0.172 REMARK 500 4 ALA A 61 C GLY A 62 N -0.180 REMARK 500 4 GLY A 91 C ALA A 92 N -0.143 REMARK 500 4 GLN A 127 N GLN A 127 CA -0.130 REMARK 500 5 GLY A 43 N GLY A 43 CA -0.118 REMARK 500 5 PHE A 53 CG PHE A 53 CD1 -0.120 REMARK 500 5 PHE A 53 C PHE A 53 O -0.116 REMARK 500 5 LEU A 56 CA LEU A 56 C -0.157 REMARK 500 5 VAL A 60 CB VAL A 60 CG1 -0.133 REMARK 500 5 ALA A 61 CA ALA A 61 CB -0.189 REMARK 500 5 ALA A 61 C GLY A 62 N -0.150 REMARK 500 5 GLY A 91 C ALA A 92 N -0.142 REMARK 500 5 VAL A 95 C ASP A 96 N -0.147 REMARK 500 REMARK 500 THIS ENTRY HAS 182 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 PHE A 53 CB - CG - CD1 ANGL. DEV. = -5.3 DEGREES REMARK 500 1 GLN A 54 N - CA - CB ANGL. DEV. = -13.8 DEGREES REMARK 500 1 SER A 73 N - CA - CB ANGL. DEV. = -9.7 DEGREES REMARK 500 1 ASP A 96 N - CA - C ANGL. DEV. = -17.9 DEGREES REMARK 500 1 GLN A 125 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 2 PHE A 53 CB - CG - CD1 ANGL. DEV. = -5.0 DEGREES REMARK 500 2 GLN A 54 N - CA - CB ANGL. DEV. = -14.0 DEGREES REMARK 500 2 TYR A 78 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 2 ASP A 96 N - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 2 GLN A 125 N - CA - CB ANGL. DEV. = -12.4 DEGREES REMARK 500 3 PHE A 53 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 3 GLN A 54 N - CA - CB ANGL. DEV. = -13.6 DEGREES REMARK 500 3 TYR A 84 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 3 CYS A 102 CB - CA - C ANGL. DEV. = 7.7 DEGREES REMARK 500 3 GLN A 125 N - CA - CB ANGL. DEV. = -11.5 DEGREES REMARK 500 4 PHE A 53 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 4 GLN A 54 N - CA - CB ANGL. DEV. = -13.6 DEGREES REMARK 500 4 CYS A 102 CB - CA - C ANGL. DEV. = 7.4 DEGREES REMARK 500 4 GLN A 125 N - CA - CB ANGL. DEV. = -11.8 DEGREES REMARK 500 5 PHE A 53 CB - CG - CD1 ANGL. DEV. = -4.7 DEGREES REMARK 500 5 GLN A 54 N - CA - CB ANGL. DEV. = -11.8 DEGREES REMARK 500 5 TYR A 84 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 5 ASP A 96 N - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 5 VAL A 110 CA - CB - CG1 ANGL. DEV. = -9.6 DEGREES REMARK 500 5 GLN A 125 N - CA - CB ANGL. DEV. = -10.9 DEGREES REMARK 500 6 PHE A 53 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 6 GLN A 54 N - CA - CB ANGL. DEV. = -12.1 DEGREES REMARK 500 6 GLN A 125 N - CA - CB ANGL. DEV. = -10.9 DEGREES REMARK 500 7 PHE A 53 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 7 GLN A 54 N - CA - CB ANGL. DEV. = -12.3 DEGREES REMARK 500 7 LYS A 89 N - CA - CB ANGL. DEV. = 10.9 DEGREES REMARK 500 7 ASP A 96 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 7 GLN A 125 N - CA - CB ANGL. DEV. = -10.9 DEGREES REMARK 500 8 PHE A 53 CB - CG - CD1 ANGL. DEV. = -5.3 DEGREES REMARK 500 8 GLN A 54 N - CA - CB ANGL. DEV. = -12.9 DEGREES REMARK 500 8 SER A 73 N - CA - CB ANGL. DEV. = -10.2 DEGREES REMARK 500 8 GLN A 125 N - CA - CB ANGL. DEV. = -11.9 DEGREES REMARK 500 9 PHE A 53 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 9 GLN A 54 N - CA - CB ANGL. DEV. = -13.6 DEGREES REMARK 500 9 CYS A 102 CB - CA - C ANGL. DEV. = 7.4 DEGREES REMARK 500 9 GLN A 125 N - CA - CB ANGL. DEV. = -11.8 DEGREES REMARK 500 10 PHE A 53 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 10 GLN A 54 N - CA - CB ANGL. DEV. = -12.8 DEGREES REMARK 500 10 TYR A 84 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 10 TYR A 84 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 10 GLN A 125 N - CA - CB ANGL. DEV. = -12.4 DEGREES REMARK 500 11 PHE A 53 CB - CG - CD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 11 GLN A 54 N - CA - CB ANGL. DEV. = -13.1 DEGREES REMARK 500 11 ARG A 76 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 11 CYS A 102 CB - CA - C ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 77 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 8 -92.80 53.23 REMARK 500 1 HIS A 9 123.84 -175.25 REMARK 500 1 SER A 11 -135.02 -100.71 REMARK 500 1 GLU A 16 166.22 66.70 REMARK 500 1 ASN A 17 54.69 -94.68 REMARK 500 1 GLN A 18 -74.16 -70.90 REMARK 500 1 LEU A 21 -42.83 21.03 REMARK 500 1 SER A 24 -85.26 -159.63 REMARK 500 1 PHE A 35 67.40 -118.20 REMARK 500 1 PRO A 36 -13.92 -42.49 REMARK 500 1 SER A 40 -89.70 -108.02 REMARK 500 1 ALA A 41 -29.21 100.07 REMARK 500 1 ALA A 45 -166.60 -175.76 REMARK 500 1 LYS A 49 -160.96 -107.28 REMARK 500 1 ALA A 61 -101.02 -46.92 REMARK 500 1 MET A 64 -71.06 -123.35 REMARK 500 1 LYS A 68 -55.64 58.68 REMARK 500 1 ARG A 76 -47.09 -143.70 REMARK 500 1 LEU A 85 34.44 -78.89 REMARK 500 1 VAL A 88 108.51 -46.34 REMARK 500 1 LYS A 89 -54.04 -153.41 REMARK 500 1 PRO A 90 -142.98 -95.66 REMARK 500 1 ARG A 94 -2.41 64.54 REMARK 500 1 LEU A 97 17.16 -36.05 REMARK 500 1 CYS A 102 11.43 51.89 REMARK 500 1 ASP A 106 -143.24 -77.10 REMARK 500 1 GLN A 125 -134.09 21.94 REMARK 500 1 ALA A 126 -69.84 66.28 REMARK 500 1 GLU A 130 -86.50 -166.57 REMARK 500 2 HIS A 5 36.42 -150.84 REMARK 500 2 HIS A 8 -66.98 68.30 REMARK 500 2 HIS A 9 -80.66 -169.05 REMARK 500 2 SER A 11 -95.97 -148.99 REMARK 500 2 GLN A 12 26.55 -140.86 REMARK 500 2 PRO A 14 -70.94 -94.05 REMARK 500 2 MET A 15 -74.41 -74.48 REMARK 500 2 GLU A 16 -70.27 -164.00 REMARK 500 2 PRO A 19 153.33 -47.90 REMARK 500 2 SER A 23 137.50 85.93 REMARK 500 2 SER A 24 -96.66 66.40 REMARK 500 2 PHE A 35 74.45 -116.90 REMARK 500 2 PRO A 36 -15.99 -41.61 REMARK 500 2 HIS A 37 -61.88 -95.11 REMARK 500 2 ALA A 41 -36.37 -173.15 REMARK 500 2 GLU A 44 -70.84 -39.09 REMARK 500 2 ILE A 50 -46.04 68.28 REMARK 500 2 ARG A 59 -62.50 -99.50 REMARK 500 2 ALA A 61 -93.42 -44.47 REMARK 500 2 ASN A 65 56.41 -146.32 REMARK 500 2 LYS A 68 -53.39 58.70 REMARK 500 REMARK 500 THIS ENTRY HAS 471 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 95 ASP A 96 1 148.09 REMARK 500 VAL A 60 ALA A 61 8 -149.81 REMARK 500 VAL A 60 ALA A 61 15 -149.74 REMARK 500 VAL A 60 ALA A 61 16 -148.43 REMARK 500 GLU A 42 GLY A 43 17 -149.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 59 0.07 SIDE CHAIN REMARK 500 2 ARG A 83 0.09 SIDE CHAIN REMARK 500 3 ARG A 59 0.17 SIDE CHAIN REMARK 500 4 ARG A 59 0.17 SIDE CHAIN REMARK 500 4 ARG A 76 0.11 SIDE CHAIN REMARK 500 5 ARG A 59 0.17 SIDE CHAIN REMARK 500 5 ARG A 128 0.09 SIDE CHAIN REMARK 500 6 ARG A 76 0.11 SIDE CHAIN REMARK 500 7 ARG A 59 0.16 SIDE CHAIN REMARK 500 7 ARG A 128 0.11 SIDE CHAIN REMARK 500 8 ARG A 59 0.10 SIDE CHAIN REMARK 500 9 ARG A 59 0.16 SIDE CHAIN REMARK 500 9 ARG A 76 0.11 SIDE CHAIN REMARK 500 10 ARG A 59 0.08 SIDE CHAIN REMARK 500 11 ARG A 59 0.10 SIDE CHAIN REMARK 500 11 ARG A 83 0.13 SIDE CHAIN REMARK 500 12 ARG A 59 0.08 SIDE CHAIN REMARK 500 12 ARG A 76 0.10 SIDE CHAIN REMARK 500 13 ARG A 59 0.12 SIDE CHAIN REMARK 500 15 ARG A 76 0.11 SIDE CHAIN REMARK 500 16 ARG A 76 0.11 SIDE CHAIN REMARK 500 16 ARG A 128 0.08 SIDE CHAIN REMARK 500 17 ARG A 59 0.08 SIDE CHAIN REMARK 500 17 ARG A 76 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34110 RELATED DB: BMRB REMARK 900 STRUCTURE OF THE N-TERMINAL DOMAIN OF THE ESCHERICHIA COLI PROQ RNA REMARK 900 BINDING PROTEIN DBREF 5NB9 A 15 133 UNP B7MBN8 PROQ_ECO45 1 119 SEQADV 5NB9 MET A 1 UNP B7MBN8 INITIATING METHIONINE SEQADV 5NB9 GLY A 2 UNP B7MBN8 EXPRESSION TAG SEQADV 5NB9 SER A 3 UNP B7MBN8 EXPRESSION TAG SEQADV 5NB9 SER A 4 UNP B7MBN8 EXPRESSION TAG SEQADV 5NB9 HIS A 5 UNP B7MBN8 EXPRESSION TAG SEQADV 5NB9 HIS A 6 UNP B7MBN8 EXPRESSION TAG SEQADV 5NB9 HIS A 7 UNP B7MBN8 EXPRESSION TAG SEQADV 5NB9 HIS A 8 UNP B7MBN8 EXPRESSION TAG SEQADV 5NB9 HIS A 9 UNP B7MBN8 EXPRESSION TAG SEQADV 5NB9 HIS A 10 UNP B7MBN8 EXPRESSION TAG SEQADV 5NB9 SER A 11 UNP B7MBN8 EXPRESSION TAG SEQADV 5NB9 GLN A 12 UNP B7MBN8 EXPRESSION TAG SEQADV 5NB9 ASP A 13 UNP B7MBN8 EXPRESSION TAG SEQADV 5NB9 PRO A 14 UNP B7MBN8 EXPRESSION TAG SEQRES 1 A 133 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 133 PRO MET GLU ASN GLN PRO LYS LEU ASN SER SER LYS GLU SEQRES 3 A 133 VAL ILE ALA PHE LEU ALA GLU ARG PHE PRO HIS CYS PHE SEQRES 4 A 133 SER ALA GLU GLY GLU ALA ARG PRO LEU LYS ILE GLY ILE SEQRES 5 A 133 PHE GLN ASP LEU VAL ASP ARG VAL ALA GLY GLU MET ASN SEQRES 6 A 133 LEU SER LYS THR GLN LEU ARG SER ALA LEU ARG LEU TYR SEQRES 7 A 133 THR SER SER TRP ARG TYR LEU TYR GLY VAL LYS PRO GLY SEQRES 8 A 133 ALA THR ARG VAL ASP LEU ASP GLY ASN PRO CYS GLY GLU SEQRES 9 A 133 LEU ASP GLU GLN HIS VAL GLU HIS ALA ARG LYS GLN LEU SEQRES 10 A 133 GLU GLU ALA LYS ALA ARG VAL GLN ALA GLN ARG ALA GLU SEQRES 11 A 133 GLN GLN ALA HELIX 1 AA1 SER A 24 PHE A 35 1 12 HELIX 2 AA2 ILE A 52 VAL A 60 1 9 HELIX 3 AA3 ALA A 61 MET A 64 5 4 HELIX 4 AA4 LYS A 68 SER A 73 1 6 HELIX 5 AA5 SER A 73 TYR A 78 1 6 HELIX 6 AA6 THR A 79 SER A 81 5 3 HELIX 7 AA7 PRO A 90 ARG A 94 5 5 HELIX 8 AA8 GLN A 116 GLN A 125 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1