HEADER DNA BINDING PROTEIN 01-MAR-17 5NBC TITLE STRUCTURE OF PROKARYOTIC TRANSCRIPTION FACTORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERRIC UPTAKE REGULATION PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS; SOURCE 3 ORGANISM_TAXID: 263; SOURCE 4 GENE: FUR, AV531_00680, DR86_1441; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRULENCE FACTOR, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.PERARD,P.CARPENTIER,I.MICHAUD-SORET,C.CAVAZZA REVDAT 5 08-MAY-24 5NBC 1 REMARK REVDAT 4 16-OCT-19 5NBC 1 REMARK REVDAT 3 12-JUN-19 5NBC 1 COMPND AUTHOR REVDAT 2 10-OCT-18 5NBC 1 COMPND JRNL REVDAT 1 16-MAY-18 5NBC 0 JRNL AUTH J.PERARD,S.NADER,M.LEVERT,L.ARNAUD,P.CARPENTIER,C.SIEBERT, JRNL AUTH 2 F.BLANQUET,C.CAVAZZA,P.RENESTO,D.SCHNEIDER,M.MAURIN,J.COVES, JRNL AUTH 3 S.CROUZY,I.MICHAUD-SORET JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF THE METALLOREGULATOR JRNL TITL 2 FUR IDENTIFY A PROMOTER-BINDING MECHANISM AND ITS ROLE JRNL TITL 3 INFRANCISELLA TULARENSISVIRULENCE. JRNL REF COMMUN BIOL V. 1 93 2018 JRNL REFN ESSN 2399-3642 JRNL PMID 30271974 JRNL DOI 10.1038/S42003-018-0095-6 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 64585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 3194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0884 - 4.8302 0.97 2715 141 0.2220 0.2256 REMARK 3 2 4.8302 - 3.8347 0.99 2729 144 0.1816 0.1981 REMARK 3 3 3.8347 - 3.3502 0.99 2695 143 0.2055 0.2350 REMARK 3 4 3.3502 - 3.0440 1.00 2764 145 0.2047 0.2046 REMARK 3 5 3.0440 - 2.8259 0.99 2698 143 0.2110 0.2567 REMARK 3 6 2.8259 - 2.6593 1.00 2720 141 0.2188 0.2450 REMARK 3 7 2.6593 - 2.5261 1.00 2731 144 0.2143 0.2537 REMARK 3 8 2.5261 - 2.4162 1.00 2724 144 0.2170 0.2590 REMARK 3 9 2.4162 - 2.3232 1.00 2703 141 0.2123 0.2802 REMARK 3 10 2.3232 - 2.2430 1.00 2741 142 0.2128 0.2378 REMARK 3 11 2.2430 - 2.1729 1.00 2718 146 0.2040 0.2261 REMARK 3 12 2.1729 - 2.1108 1.00 2713 141 0.2091 0.2584 REMARK 3 13 2.1108 - 2.0552 1.00 2691 135 0.2061 0.2401 REMARK 3 14 2.0552 - 2.0051 1.00 2766 130 0.2148 0.2419 REMARK 3 15 2.0051 - 1.9595 1.00 2723 141 0.2231 0.2790 REMARK 3 16 1.9595 - 1.9178 1.00 2698 157 0.2323 0.2774 REMARK 3 17 1.9178 - 1.8794 1.00 2702 128 0.2428 0.2913 REMARK 3 18 1.8794 - 1.8440 1.00 2742 140 0.2522 0.2904 REMARK 3 19 1.8440 - 1.8110 1.00 2701 151 0.2641 0.3110 REMARK 3 20 1.8110 - 1.7803 0.97 2633 124 0.2720 0.3238 REMARK 3 21 1.7803 - 1.7516 0.93 2508 130 0.2909 0.3157 REMARK 3 22 1.7516 - 1.7247 0.89 2426 107 0.2943 0.3277 REMARK 3 23 1.7247 - 1.6993 0.80 2150 136 0.3188 0.3440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4211 REMARK 3 ANGLE : 0.874 5663 REMARK 3 CHIRALITY : 0.053 629 REMARK 3 PLANARITY : 0.005 730 REMARK 3 DIHEDRAL : 16.965 1603 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NBC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003821. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97, 1.77 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE VERSION NOVEMBER 3, 2014 REMARK 200 BUILT=20141118 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64620 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 42.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD VERSION 2014/2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M MES PH 5.8, 20% W/V PEG 3350 0.2 REMARK 280 M MAGNESIUM CHLORIDES HEXAHYDRATE 0,01MM OF MNCL2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 ASN A 5 REMARK 465 LEU A 6 REMARK 465 ASP A 7 REMARK 465 LYS A 139 REMARK 465 ILE A 140 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 465 ASN B 5 REMARK 465 LEU B 6 REMARK 465 ASP B 7 REMARK 465 LEU B 8 REMARK 465 LYS B 139 REMARK 465 ILE B 140 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 SER C 3 REMARK 465 LYS C 4 REMARK 465 ASN C 5 REMARK 465 LEU C 6 REMARK 465 ASP C 7 REMARK 465 LEU C 8 REMARK 465 LYS C 9 REMARK 465 GLU C 10 REMARK 465 PHE C 11 REMARK 465 GLY C 12 REMARK 465 ASN C 29 REMARK 465 LYS C 139 REMARK 465 ILE C 140 REMARK 465 MET D 1 REMARK 465 ASN D 2 REMARK 465 SER D 3 REMARK 465 LYS D 4 REMARK 465 ASN D 5 REMARK 465 LEU D 6 REMARK 465 ASP D 7 REMARK 465 LEU D 8 REMARK 465 LYS D 9 REMARK 465 GLU D 10 REMARK 465 PHE D 11 REMARK 465 GLY D 12 REMARK 465 PHE D 13 REMARK 465 LYS D 14 REMARK 465 LYS D 139 REMARK 465 ILE D 140 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 8 CG CD1 CD2 REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 GLU B 138 O CG CD OE1 OE2 REMARK 470 LYS C 14 CG CD CE NZ REMARK 470 GLN C 17 CD OE1 NE2 REMARK 470 LYS C 32 CE NZ REMARK 470 GLU C 138 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU C 21 CG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 301 O HOH D 310 1.99 REMARK 500 O HOH C 303 O HOH C 383 2.03 REMARK 500 O HOH D 389 O HOH D 401 2.04 REMARK 500 NZ LYS D 72 O HOH D 301 2.06 REMARK 500 O HOH C 303 O HOH C 326 2.06 REMARK 500 O HOH D 303 O HOH D 313 2.08 REMARK 500 O ASN D 29 O HOH D 302 2.09 REMARK 500 O HOH D 308 O HOH D 399 2.10 REMARK 500 O HOH C 405 O HOH C 407 2.10 REMARK 500 O HOH A 302 O HOH B 357 2.11 REMARK 500 O HOH B 328 O HOH B 345 2.11 REMARK 500 O VAL C 15 O HOH C 301 2.11 REMARK 500 O HOH D 380 O HOH D 383 2.11 REMARK 500 O HOH D 303 O HOH D 352 2.11 REMARK 500 OG SER C 64 O HOH C 302 2.14 REMARK 500 O HOH B 311 O HOH B 350 2.14 REMARK 500 O HOH B 303 O HOH B 379 2.14 REMARK 500 O HOH D 359 O HOH D 399 2.15 REMARK 500 O HOH C 334 O HOH C 406 2.16 REMARK 500 O HOH C 303 O HOH C 338 2.16 REMARK 500 O HOH C 332 O HOH C 411 2.17 REMARK 500 OD1 ASN D 60 O HOH D 303 2.17 REMARK 500 OD2 ASP A 74 O HOH A 301 2.17 REMARK 500 O HOH C 398 O HOH C 413 2.18 REMARK 500 O HOH D 314 O HOH D 375 2.18 REMARK 500 O HOH D 301 O HOH D 329 2.18 REMARK 500 O HOH B 394 O HOH C 412 2.18 REMARK 500 O HOH D 303 O HOH D 392 2.19 REMARK 500 O HOH C 301 O HOH C 323 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 10 90.60 -69.68 REMARK 500 ASN A 29 55.83 -119.43 REMARK 500 ASP A 74 -150.55 -153.33 REMARK 500 ASP B 74 -152.53 -155.26 REMARK 500 CYS B 136 2.61 -68.35 REMARK 500 ASN C 75 -169.50 -116.80 REMARK 500 ASN D 75 -168.49 -114.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE B 11 GLY B 12 -140.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 415 DISTANCE = 5.85 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 33 NE2 REMARK 620 2 GLU A 81 OE1 93.0 REMARK 620 3 GLU A 81 OE2 89.9 57.5 REMARK 620 4 HIS A 88 NE2 161.5 88.4 106.2 REMARK 620 5 HIS A 90 NE2 95.9 151.3 95.2 91.6 REMARK 620 6 GLU A 101 OE2 87.6 84.6 141.7 74.2 123.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 93 SG REMARK 620 2 CYS A 96 SG 109.5 REMARK 620 3 CYS A 133 SG 112.9 113.5 REMARK 620 4 CYS A 136 SG 108.6 109.0 103.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 33 NE2 REMARK 620 2 GLU B 81 OE1 93.9 REMARK 620 3 GLU B 81 OE2 91.7 58.9 REMARK 620 4 HIS B 88 NE2 156.8 96.2 111.4 REMARK 620 5 HIS B 90 NE2 94.8 153.4 95.8 85.4 REMARK 620 6 GLU B 101 OE2 85.7 87.3 145.9 74.0 118.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 93 SG REMARK 620 2 CYS B 96 SG 108.7 REMARK 620 3 CYS B 133 SG 113.2 111.4 REMARK 620 4 CYS B 136 SG 108.3 111.6 103.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 33 NE2 REMARK 620 2 GLU C 81 OE1 88.7 REMARK 620 3 GLU C 81 OE2 92.8 56.6 REMARK 620 4 HIS C 88 NE2 169.9 101.4 93.0 REMARK 620 5 HIS C 90 NE2 90.3 87.7 144.0 89.8 REMARK 620 6 GLU C 101 OE2 90.0 149.5 93.1 81.4 122.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 93 SG REMARK 620 2 CYS C 96 SG 108.3 REMARK 620 3 CYS C 133 SG 109.4 112.1 REMARK 620 4 CYS C 136 SG 113.3 104.5 109.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 33 NE2 REMARK 620 2 GLU D 81 OE1 92.4 REMARK 620 3 GLU D 81 OE2 94.1 58.1 REMARK 620 4 HIS D 88 NE2 165.8 94.2 100.0 REMARK 620 5 HIS D 90 NE2 92.5 146.5 88.5 88.9 REMARK 620 6 GLU D 101 OE1 84.1 94.2 152.2 83.0 119.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 93 SG REMARK 620 2 CYS D 96 SG 107.1 REMARK 620 3 CYS D 133 SG 110.5 114.2 REMARK 620 4 CYS D 136 SG 111.4 109.4 104.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 202 DBREF1 5NBC A 1 140 UNP A0A0E2ZLC3_FRATU DBREF2 5NBC A A0A0E2ZLC3 1 140 DBREF1 5NBC B 1 140 UNP A0A0E2ZLC3_FRATU DBREF2 5NBC B A0A0E2ZLC3 1 140 DBREF1 5NBC C 1 140 UNP A0A0E2ZLC3_FRATU DBREF2 5NBC C A0A0E2ZLC3 1 140 DBREF1 5NBC D 1 140 UNP A0A0E2ZLC3_FRATU DBREF2 5NBC D A0A0E2ZLC3 1 140 SEQRES 1 A 140 MET ASN SER LYS ASN LEU ASP LEU LYS GLU PHE GLY PHE SEQRES 2 A 140 LYS VAL THR GLN PRO ARG VAL GLU ILE LEU LYS LEU PHE SEQRES 3 A 140 GLU LYS ASN LYS ASP LYS HIS LEU SER PRO ASP ASP VAL SEQRES 4 A 140 PHE SER LYS LEU LYS ALA GLN GLY SER THR THR GLY ILE SEQRES 5 A 140 ALA THR VAL TYR ARG VAL LEU ASN GLN PHE GLU SER ALA SEQRES 6 A 140 GLY ILE ILE ASN ARG LEU LYS LEU ASP ASN GLU GLN VAL SEQRES 7 A 140 MET TYR GLU LEU ASN GLN GLY GLU HIS HIS ASP HIS ILE SEQRES 8 A 140 ILE CYS VAL LYS CYS ASN MET ILE GLN GLU PHE TYR SER SEQRES 9 A 140 PRO GLY ILE GLU ALA LEU GLN LYS GLN ILE VAL GLU SER SEQRES 10 A 140 PHE GLY ALA GLU MET ILE ASP TYR SER LEU ASN ILE TYR SEQRES 11 A 140 VAL LYS CYS LYS SER CYS ARG GLU LYS ILE SEQRES 1 B 140 MET ASN SER LYS ASN LEU ASP LEU LYS GLU PHE GLY PHE SEQRES 2 B 140 LYS VAL THR GLN PRO ARG VAL GLU ILE LEU LYS LEU PHE SEQRES 3 B 140 GLU LYS ASN LYS ASP LYS HIS LEU SER PRO ASP ASP VAL SEQRES 4 B 140 PHE SER LYS LEU LYS ALA GLN GLY SER THR THR GLY ILE SEQRES 5 B 140 ALA THR VAL TYR ARG VAL LEU ASN GLN PHE GLU SER ALA SEQRES 6 B 140 GLY ILE ILE ASN ARG LEU LYS LEU ASP ASN GLU GLN VAL SEQRES 7 B 140 MET TYR GLU LEU ASN GLN GLY GLU HIS HIS ASP HIS ILE SEQRES 8 B 140 ILE CYS VAL LYS CYS ASN MET ILE GLN GLU PHE TYR SER SEQRES 9 B 140 PRO GLY ILE GLU ALA LEU GLN LYS GLN ILE VAL GLU SER SEQRES 10 B 140 PHE GLY ALA GLU MET ILE ASP TYR SER LEU ASN ILE TYR SEQRES 11 B 140 VAL LYS CYS LYS SER CYS ARG GLU LYS ILE SEQRES 1 C 140 MET ASN SER LYS ASN LEU ASP LEU LYS GLU PHE GLY PHE SEQRES 2 C 140 LYS VAL THR GLN PRO ARG VAL GLU ILE LEU LYS LEU PHE SEQRES 3 C 140 GLU LYS ASN LYS ASP LYS HIS LEU SER PRO ASP ASP VAL SEQRES 4 C 140 PHE SER LYS LEU LYS ALA GLN GLY SER THR THR GLY ILE SEQRES 5 C 140 ALA THR VAL TYR ARG VAL LEU ASN GLN PHE GLU SER ALA SEQRES 6 C 140 GLY ILE ILE ASN ARG LEU LYS LEU ASP ASN GLU GLN VAL SEQRES 7 C 140 MET TYR GLU LEU ASN GLN GLY GLU HIS HIS ASP HIS ILE SEQRES 8 C 140 ILE CYS VAL LYS CYS ASN MET ILE GLN GLU PHE TYR SER SEQRES 9 C 140 PRO GLY ILE GLU ALA LEU GLN LYS GLN ILE VAL GLU SER SEQRES 10 C 140 PHE GLY ALA GLU MET ILE ASP TYR SER LEU ASN ILE TYR SEQRES 11 C 140 VAL LYS CYS LYS SER CYS ARG GLU LYS ILE SEQRES 1 D 140 MET ASN SER LYS ASN LEU ASP LEU LYS GLU PHE GLY PHE SEQRES 2 D 140 LYS VAL THR GLN PRO ARG VAL GLU ILE LEU LYS LEU PHE SEQRES 3 D 140 GLU LYS ASN LYS ASP LYS HIS LEU SER PRO ASP ASP VAL SEQRES 4 D 140 PHE SER LYS LEU LYS ALA GLN GLY SER THR THR GLY ILE SEQRES 5 D 140 ALA THR VAL TYR ARG VAL LEU ASN GLN PHE GLU SER ALA SEQRES 6 D 140 GLY ILE ILE ASN ARG LEU LYS LEU ASP ASN GLU GLN VAL SEQRES 7 D 140 MET TYR GLU LEU ASN GLN GLY GLU HIS HIS ASP HIS ILE SEQRES 8 D 140 ILE CYS VAL LYS CYS ASN MET ILE GLN GLU PHE TYR SER SEQRES 9 D 140 PRO GLY ILE GLU ALA LEU GLN LYS GLN ILE VAL GLU SER SEQRES 10 D 140 PHE GLY ALA GLU MET ILE ASP TYR SER LEU ASN ILE TYR SEQRES 11 D 140 VAL LYS CYS LYS SER CYS ARG GLU LYS ILE HET MN A 201 1 HET ZN A 202 1 HET MN B 201 1 HET ZN B 202 1 HET MN C 201 1 HET ZN C 202 1 HET MN D 201 1 HET ZN D 202 1 HETNAM MN MANGANESE (II) ION HETNAM ZN ZINC ION FORMUL 5 MN 4(MN 2+) FORMUL 6 ZN 4(ZN 2+) FORMUL 13 HOH *402(H2 O) HELIX 1 AA1 THR A 16 ASN A 29 1 14 HELIX 2 AA2 SER A 35 GLN A 46 1 12 HELIX 3 AA3 GLY A 51 ALA A 65 1 15 HELIX 4 AA4 SER A 104 PHE A 118 1 15 HELIX 5 AA5 THR B 16 ASN B 29 1 14 HELIX 6 AA6 SER B 35 GLN B 46 1 12 HELIX 7 AA7 GLY B 51 ALA B 65 1 15 HELIX 8 AA8 SER B 104 PHE B 118 1 15 HELIX 9 AA9 CYS B 133 GLU B 138 1 6 HELIX 10 AB1 THR C 16 PHE C 26 1 11 HELIX 11 AB2 SER C 35 GLN C 46 1 12 HELIX 12 AB3 GLY C 51 ALA C 65 1 15 HELIX 13 AB4 SER C 104 PHE C 118 1 15 HELIX 14 AB5 CYS C 133 GLU C 138 1 6 HELIX 15 AB6 THR D 16 PHE D 26 1 11 HELIX 16 AB7 SER D 35 GLN D 46 1 12 HELIX 17 AB8 GLY D 51 ALA D 65 1 15 HELIX 18 AB9 SER D 104 PHE D 118 1 15 HELIX 19 AC1 LYS D 134 GLU D 138 5 5 SHEET 1 AA1 2 ILE A 68 LYS A 72 0 SHEET 2 AA1 2 VAL A 78 LEU A 82 -1 O MET A 79 N LEU A 71 SHEET 1 AA2 6 ILE A 99 PHE A 102 0 SHEET 2 AA2 6 ASP A 89 CYS A 93 -1 N ASP A 89 O PHE A 102 SHEET 3 AA2 6 GLU A 121 LYS A 132 1 O ILE A 129 N ILE A 92 SHEET 4 AA2 6 GLU D 121 LYS D 132 -1 O ILE D 123 N TYR A 130 SHEET 5 AA2 6 ASP D 89 CYS D 93 1 N ILE D 92 O ILE D 129 SHEET 6 AA2 6 ILE D 99 PHE D 102 -1 O PHE D 102 N ASP D 89 SHEET 1 AA3 2 ILE B 68 LYS B 72 0 SHEET 2 AA3 2 VAL B 78 LEU B 82 -1 O MET B 79 N LEU B 71 SHEET 1 AA4 6 ILE B 99 PHE B 102 0 SHEET 2 AA4 6 ASP B 89 CYS B 93 -1 N ASP B 89 O PHE B 102 SHEET 3 AA4 6 GLU B 121 LYS B 132 1 O ILE B 129 N ILE B 92 SHEET 4 AA4 6 GLU C 121 LYS C 132 -1 O ILE C 123 N TYR B 130 SHEET 5 AA4 6 ASP C 89 CYS C 93 1 N ILE C 92 O ILE C 129 SHEET 6 AA4 6 ILE C 99 PHE C 102 -1 O PHE C 102 N ASP C 89 SHEET 1 AA5 2 ILE C 68 ARG C 70 0 SHEET 2 AA5 2 TYR C 80 LEU C 82 -1 O GLU C 81 N ASN C 69 SHEET 1 AA6 2 ILE D 68 ARG D 70 0 SHEET 2 AA6 2 TYR D 80 LEU D 82 -1 O GLU D 81 N ASN D 69 LINK NE2 HIS A 33 MN MN A 201 1555 1555 2.28 LINK OE1 GLU A 81 MN MN A 201 1555 1555 2.27 LINK OE2 GLU A 81 MN MN A 201 1555 1555 2.32 LINK NE2 HIS A 88 MN MN A 201 1555 1555 2.27 LINK NE2 HIS A 90 MN MN A 201 1555 1555 2.20 LINK SG CYS A 93 ZN ZN A 202 1555 1555 2.31 LINK SG CYS A 96 ZN ZN A 202 1555 1555 2.17 LINK OE2 GLU A 101 MN MN A 201 1555 1555 2.24 LINK SG CYS A 133 ZN ZN A 202 1555 1555 2.28 LINK SG CYS A 136 ZN ZN A 202 1555 1555 2.27 LINK NE2 HIS B 33 MN MN B 201 1555 1555 2.30 LINK OE1 GLU B 81 MN MN B 201 1555 1555 2.24 LINK OE2 GLU B 81 MN MN B 201 1555 1555 2.24 LINK NE2 HIS B 88 MN MN B 201 1555 1555 2.23 LINK NE2 HIS B 90 MN MN B 201 1555 1555 2.20 LINK SG CYS B 93 ZN ZN B 202 1555 1555 2.31 LINK SG CYS B 96 ZN ZN B 202 1555 1555 2.22 LINK OE2 GLU B 101 MN MN B 201 1555 1555 2.22 LINK SG CYS B 133 ZN ZN B 202 1555 1555 2.35 LINK SG CYS B 136 ZN ZN B 202 1555 1555 2.32 LINK NE2 HIS C 33 MN MN C 201 1555 1555 2.21 LINK OE1 GLU C 81 MN MN C 201 1555 1555 2.32 LINK OE2 GLU C 81 MN MN C 201 1555 1555 2.30 LINK NE2 HIS C 88 MN MN C 201 1555 1555 2.30 LINK NE2 HIS C 90 MN MN C 201 1555 1555 2.27 LINK SG CYS C 93 ZN ZN C 202 1555 1555 2.33 LINK SG CYS C 96 ZN ZN C 202 1555 1555 2.21 LINK OE2 GLU C 101 MN MN C 201 1555 1555 2.12 LINK SG CYS C 133 ZN ZN C 202 1555 1555 2.26 LINK SG CYS C 136 ZN ZN C 202 1555 1555 2.39 LINK NE2 HIS D 33 MN MN D 201 1555 1555 2.25 LINK OE1 GLU D 81 MN MN D 201 1555 1555 2.25 LINK OE2 GLU D 81 MN MN D 201 1555 1555 2.27 LINK NE2 HIS D 88 MN MN D 201 1555 1555 2.13 LINK NE2 HIS D 90 MN MN D 201 1555 1555 2.18 LINK SG CYS D 93 ZN ZN D 202 1555 1555 2.36 LINK SG CYS D 96 ZN ZN D 202 1555 1555 2.28 LINK OE1 GLU D 101 MN MN D 201 1555 1555 2.19 LINK SG CYS D 133 ZN ZN D 202 1555 1555 2.33 LINK SG CYS D 136 ZN ZN D 202 1555 1555 2.33 CISPEP 1 LYS C 30 ASP C 31 0 -12.54 CISPEP 2 VAL D 15 THR D 16 0 0.58 SITE 1 AC1 5 HIS A 33 GLU A 81 HIS A 88 HIS A 90 SITE 2 AC1 5 GLU A 101 SITE 1 AC2 4 CYS A 93 CYS A 96 CYS A 133 CYS A 136 SITE 1 AC3 5 HIS B 33 GLU B 81 HIS B 88 HIS B 90 SITE 2 AC3 5 GLU B 101 SITE 1 AC4 4 CYS B 93 CYS B 96 CYS B 133 CYS B 136 SITE 1 AC5 5 HIS C 33 GLU C 81 HIS C 88 HIS C 90 SITE 2 AC5 5 GLU C 101 SITE 1 AC6 4 CYS C 93 CYS C 96 CYS C 133 CYS C 136 SITE 1 AC7 5 HIS D 33 GLU D 81 HIS D 88 HIS D 90 SITE 2 AC7 5 GLU D 101 SITE 1 AC8 4 CYS D 93 CYS D 96 CYS D 133 CYS D 136 CRYST1 53.150 90.000 63.950 90.00 93.48 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018815 0.000000 0.001145 0.00000 SCALE2 0.000000 0.011111 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015666 0.00000