HEADER SIGNALING PROTEIN 06-MAR-17 5NCL TITLE CRYSTAL STRUCTURE OF THE CBK1-MOB2 KINASE-COACTIVATOR COMPLEX WITH AN TITLE 2 SSD1 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE CBK1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 251-756; COMPND 5 SYNONYM: CELL WALL BIOSYNTHESIS KINASE; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CBK1 KINASE ACTIVATOR PROTEIN MOB2; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 46-287; COMPND 12 SYNONYM: MPS1 BINDER 2,MAINTENANCE OF PLOIDY PROTEIN MOB2; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: PROTEIN SSD1; COMPND 16 CHAIN: D; COMPND 17 FRAGMENT: UNP RESIDUES 205-214; COMPND 18 SYNONYM: PROTEIN SRK1; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: CBK1, YNL161W, N1727; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 10 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 11 ORGANISM_TAXID: 4932; SOURCE 12 GENE: MOB2, YFL034C-B, YFL035C, YFL035C-A; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 17 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 18 ORGANISM_TAXID: 4932; SOURCE 19 GENE: SSD1, CLA1, RLD1, SRK1, YDR293C, D9819.4; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SIGNALING PROTEIN, KINASE EXPDTA X-RAY DIFFRACTION AUTHOR G.GOGL,A.REMENYI,B.PARKER,E.WEISS REVDAT 3 17-JAN-24 5NCL 1 REMARK REVDAT 2 06-MAY-20 5NCL 1 JRNL REVDAT 1 16-MAY-18 5NCL 0 JRNL AUTH B.W.PARKER,G.GOGL,M.BALINT,C.HETENYI,A.REMENYI,E.L.WEISS JRNL TITL NDR/LATS KINASES BIND SPECIFIC MOB-FAMILY COACTIVATORS JRNL TITL 2 THROUGH A CONSERVED AND MODULAR INTERFACE. JRNL REF BIOCHEMISTRY 2020 JRNL REFN ISSN 0006-2960 JRNL PMID 32250593 JRNL DOI 10.1021/ACS.BIOCHEM.9B01096 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2420: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5996 - 6.0219 1.00 2752 156 0.2026 0.2471 REMARK 3 2 6.0219 - 4.7815 1.00 2698 160 0.2393 0.2758 REMARK 3 3 4.7815 - 4.1776 1.00 2687 135 0.2118 0.3346 REMARK 3 4 4.1776 - 3.7959 1.00 2694 131 0.2327 0.2951 REMARK 3 5 3.7959 - 3.5239 1.00 2699 133 0.2553 0.3562 REMARK 3 6 3.5239 - 3.3162 1.00 2643 150 0.2738 0.3223 REMARK 3 7 3.3162 - 3.1502 1.00 2707 135 0.3326 0.4256 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4871 REMARK 3 ANGLE : 1.292 6629 REMARK 3 CHIRALITY : 0.061 728 REMARK 3 PLANARITY : 0.008 848 REMARK 3 DIHEDRAL : 18.223 2851 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -20.7981 -13.6636 19.7830 REMARK 3 T TENSOR REMARK 3 T11: 0.5771 T22: 0.4364 REMARK 3 T33: 0.6904 T12: 0.0641 REMARK 3 T13: -0.0951 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 3.0984 L22: 1.3640 REMARK 3 L33: 1.7696 L12: 1.2111 REMARK 3 L13: 0.0840 L23: -0.0843 REMARK 3 S TENSOR REMARK 3 S11: 0.0937 S12: -0.9606 S13: 0.2780 REMARK 3 S21: 0.3043 S22: -0.2705 S23: -0.1846 REMARK 3 S31: -0.0896 S32: 0.3524 S33: 0.0467 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NCL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003883. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19888 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 44.595 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.16800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 1.04000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5BRK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 20,000 BUFFERED WITH 0.1M NA REMARK 280 -CITRATE, PH 5.5, MICROBATCH, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 69.21500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.99500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 69.21500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.99500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 249 REMARK 465 SER A 250 REMARK 465 SER A 251 REMARK 465 PRO A 252 REMARK 465 VAL A 253 REMARK 465 GLN A 254 REMARK 465 SER A 255 REMARK 465 GLY A 256 REMARK 465 PHE A 257 REMARK 465 ASN A 258 REMARK 465 ASN A 259 REMARK 465 GLY A 260 REMARK 465 THR A 261 REMARK 465 ILE A 262 REMARK 465 SER A 263 REMARK 465 ASN A 264 REMARK 465 TYR A 265 REMARK 465 ASP A 392 REMARK 465 GLN A 393 REMARK 465 LEU A 394 REMARK 465 ALA A 395 REMARK 465 HIS A 396 REMARK 465 VAL A 397 REMARK 465 LYS A 398 REMARK 465 ALA A 399 REMARK 465 GLU A 400 REMARK 465 ARG A 401 REMARK 465 ASP A 402 REMARK 465 VAL A 403 REMARK 465 LEU A 404 REMARK 465 ALA A 405 REMARK 465 GLY A 406 REMARK 465 LYS A 510 REMARK 465 LYS A 511 REMARK 465 LEU A 512 REMARK 465 LEU A 513 REMARK 465 GLN A 514 REMARK 465 GLN A 515 REMARK 465 ASP A 516 REMARK 465 GLU A 517 REMARK 465 ALA A 518 REMARK 465 THR A 519 REMARK 465 ASN A 520 REMARK 465 GLY A 521 REMARK 465 ILE A 522 REMARK 465 SER A 523 REMARK 465 LYS A 524 REMARK 465 PRO A 525 REMARK 465 GLY A 526 REMARK 465 THR A 527 REMARK 465 TYR A 528 REMARK 465 ASN A 529 REMARK 465 ALA A 530 REMARK 465 ASN A 531 REMARK 465 THR A 532 REMARK 465 THR A 533 REMARK 465 ASP A 534 REMARK 465 THR A 535 REMARK 465 ALA A 536 REMARK 465 ASN A 537 REMARK 465 LYS A 538 REMARK 465 ARG A 539 REMARK 465 GLN A 540 REMARK 465 THR A 541 REMARK 465 MET A 542 REMARK 465 VAL A 543 REMARK 465 VAL A 544 REMARK 465 ASP A 545 REMARK 465 ALA A 715 REMARK 465 GLN A 716 REMARK 465 ALA A 717 REMARK 465 ALA A 718 REMARK 465 LYS A 719 REMARK 465 GLN A 720 REMARK 465 ARG A 721 REMARK 465 GLU A 722 REMARK 465 GLN A 723 REMARK 465 MET A 724 REMARK 465 THR A 725 REMARK 465 LYS A 726 REMARK 465 GLN A 727 REMARK 465 GLY A 728 REMARK 465 GLY A 729 REMARK 465 SER A 730 REMARK 465 ALA A 731 REMARK 465 PRO A 732 REMARK 465 VAL A 733 REMARK 465 LYS A 734 REMARK 465 GLU A 735 REMARK 465 ASP A 736 REMARK 465 GLY B 44 REMARK 465 SER B 45 REMARK 465 ARG B 46 REMARK 465 ASN B 47 REMARK 465 LYS B 48 REMARK 465 HIS B 49 REMARK 465 HIS B 50 REMARK 465 SER B 51 REMARK 465 PRO B 52 REMARK 465 LYS B 53 REMARK 465 ARG B 54 REMARK 465 HIS B 55 REMARK 465 SER B 56 REMARK 465 GLN B 57 REMARK 465 THR B 58 REMARK 465 SER B 59 REMARK 465 PHE B 60 REMARK 465 PRO B 61 REMARK 465 ALA B 62 REMARK 465 GLN B 63 REMARK 465 LYS B 64 REMARK 465 SER B 65 REMARK 465 THR B 66 REMARK 465 PRO B 67 REMARK 465 GLN B 68 REMARK 465 SER B 69 REMARK 465 GLN B 70 REMARK 465 GLN B 71 REMARK 465 LEU B 72 REMARK 465 THR B 73 REMARK 465 SER B 74 REMARK 465 THR B 75 REMARK 465 THR B 76 REMARK 465 PRO B 77 REMARK 465 GLN B 78 REMARK 465 SER B 79 REMARK 465 GLN B 80 REMARK 465 GLN B 81 REMARK 465 GLN B 82 REMARK 465 GLU B 83 REMARK 465 ALA B 84 REMARK 465 SER B 85 REMARK 465 GLU B 86 REMARK 465 ARG B 87 REMARK 465 SER B 88 REMARK 465 GLU B 89 REMARK 465 SER B 90 REMARK 465 GLN B 91 REMARK 465 GLN B 92 REMARK 465 ILE B 93 REMARK 465 ALA B 152 REMARK 465 TYR B 153 REMARK 465 PRO B 154 REMARK 465 THR B 155 REMARK 465 MET B 156 REMARK 465 ASN B 171 REMARK 465 ARG B 172 REMARK 465 GLN B 173 REMARK 465 VAL B 174 REMARK 465 SER B 175 REMARK 465 ILE B 285 REMARK 465 TYR B 286 REMARK 465 ASN B 287 REMARK 465 THR D 205 REMARK 465 THR D 206 REMARK 465 GLU D 207 REMARK 465 GLN D 208 REMARK 465 SER D 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 266 CG SD CE REMARK 470 TYR A 267 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 268 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 ARG A 270 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 271 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 273 CG OD1 OD2 REMARK 470 LEU A 274 CG CD1 CD2 REMARK 470 THR A 276 OG1 CG2 REMARK 470 LYS A 277 CG CD CE NZ REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 GLU A 350 CG CD OE1 OE2 REMARK 470 LYS A 385 CG CD CE NZ REMARK 470 MET A 388 CG SD CE REMARK 470 LYS A 390 CG CD CE NZ REMARK 470 SER A 407 OG REMARK 470 PHE A 500 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 508 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR A 509 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 546 OG REMARK 470 ILE A 547 CG1 CG2 CD1 REMARK 470 SER A 548 OG REMARK 470 ARG A 554 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 562 CG CD CE NZ REMARK 470 ARG A 565 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 566 CG CD1 CD2 REMARK 470 MET A 567 CG SD CE REMARK 470 TYR A 569 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 571 OG1 CG2 REMARK 470 VAL A 572 CG1 CG2 REMARK 470 ILE A 578 CG1 CG2 CD1 REMARK 470 GLU A 614 CG CD OE1 OE2 REMARK 470 GLN A 628 CG CD OE1 NE2 REMARK 470 GLU A 706 CG CD OE1 OE2 REMARK 470 ASN A 707 CG OD1 ND2 REMARK 470 VAL A 708 CG1 CG2 REMARK 470 ASP A 710 CG OD1 OD2 REMARK 470 MET A 714 CG SD CE REMARK 470 SER A 745 OG REMARK 470 PHE A 747 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 750 CG CD1 CD2 REMARK 470 ARG A 752 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 753 CG CD CE NZ REMARK 470 MET B 94 CG SD CE REMARK 470 PHE B 95 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 98 CG CD OE1 OE2 REMARK 470 ARG B 102 CG CD NE CZ NH1 NH2 REMARK 470 THR B 103 OG1 CG2 REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 ASP B 151 CG OD1 OD2 REMARK 470 HIS B 161 CG ND1 CD2 CE1 NE2 REMARK 470 THR B 162 OG1 CG2 REMARK 470 LEU B 165 CG CD1 CD2 REMARK 470 TRP B 166 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 166 CZ3 CH2 REMARK 470 ASP B 168 CG OD1 OD2 REMARK 470 ASN B 170 CG OD1 ND2 REMARK 470 LEU B 176 CG CD1 CD2 REMARK 470 GLN B 180 CG CD OE1 NE2 REMARK 470 LEU B 184 CG CD1 CD2 REMARK 470 LYS B 192 CG CD CE NZ REMARK 470 GLN B 209 CG CD OE1 NE2 REMARK 470 ARG B 213 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 221 CG CD OE1 NE2 REMARK 470 PHE B 234 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 236 CG CD CE NZ REMARK 470 LEU B 240 CG CD1 CD2 REMARK 470 LEU B 242 CG CD1 CD2 REMARK 470 GLU B 243 CG CD OE1 OE2 REMARK 470 LYS B 258 CG CD CE NZ REMARK 470 LYS B 261 CG CD CE NZ REMARK 470 ARG B 265 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 266 CG CD CE NZ REMARK 470 ILE B 284 CG1 CG2 CD1 REMARK 470 ASP D 210 CG OD1 OD2 REMARK 470 LYS D 212 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 212 NE2 GLN B 216 2.09 REMARK 500 O ASP B 183 OG1 THR B 187 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 649 CB - CG - CD1 ANGL. DEV. = -10.8 DEGREES REMARK 500 LEU B 96 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 268 -168.87 -106.58 REMARK 500 PRO A 272 -148.55 -72.35 REMARK 500 ASP A 273 92.28 78.63 REMARK 500 LEU A 274 39.64 91.12 REMARK 500 LYS A 277 1.75 59.36 REMARK 500 SER A 348 -159.89 -149.88 REMARK 500 GLU A 350 -8.78 70.88 REMARK 500 VAL A 355 -67.35 -99.61 REMARK 500 LYS A 376 -167.46 -129.37 REMARK 500 SER A 386 -4.95 70.37 REMARK 500 LYS A 390 38.93 33.12 REMARK 500 ASP A 408 67.39 61.68 REMARK 500 TYR A 416 -63.25 -94.64 REMARK 500 ASP A 421 -157.17 -150.72 REMARK 500 GLN A 445 -15.09 70.40 REMARK 500 PHE A 454 -70.46 -62.13 REMARK 500 ALA A 475 30.83 -149.09 REMARK 500 ASP A 493 -169.57 -167.04 REMARK 500 SER A 497 61.08 62.72 REMARK 500 PHE A 500 -158.93 -134.91 REMARK 500 HIS A 504 -21.90 71.10 REMARK 500 ASP A 505 179.39 165.92 REMARK 500 LEU A 549 46.31 -146.22 REMARK 500 SER A 552 -16.72 80.87 REMARK 500 THR A 571 -178.26 -67.69 REMARK 500 TYR A 577 -3.78 65.34 REMARK 500 GLU A 581 4.43 -67.41 REMARK 500 LEU A 584 -160.69 -73.92 REMARK 500 TYR A 585 -177.75 -65.63 REMARK 500 CYS A 612 128.25 -36.75 REMARK 500 ASN A 625 59.28 -97.54 REMARK 500 PRO A 633 -178.23 -62.32 REMARK 500 ASP A 634 34.02 -96.24 REMARK 500 ILE A 636 -71.83 -73.00 REMARK 500 HIS A 637 8.06 43.24 REMARK 500 LEU A 650 44.30 -105.16 REMARK 500 THR A 651 -164.95 -123.65 REMARK 500 ALA A 663 -21.61 69.24 REMARK 500 PRO A 670 33.08 -81.41 REMARK 500 PHE A 672 -70.83 -115.11 REMARK 500 ASP A 676 2.82 -61.29 REMARK 500 ASN A 678 -60.56 -99.59 REMARK 500 SER A 693 -166.08 -165.50 REMARK 500 GLU A 706 68.78 60.53 REMARK 500 PRO A 709 60.97 -67.21 REMARK 500 SER A 711 67.33 38.67 REMARK 500 ALA A 713 157.15 -36.47 REMARK 500 PHE A 739 86.59 64.22 REMARK 500 TYR A 744 -158.60 -87.53 REMARK 500 ASN A 754 -3.90 -59.26 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 635 ILE A 636 -142.64 REMARK 500 PRO A 712 ALA A 713 -135.98 REMARK 500 TYR A 742 THR A 743 143.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 801 DBREF 5NCL A 251 756 UNP P53894 CBK1_YEAST 251 756 DBREF 5NCL B 46 287 UNP P43563 MOB2_YEAST 46 287 DBREF 5NCL D 205 214 UNP P24276 SSD1_YEAST 205 214 SEQADV 5NCL GLY A 249 UNP P53894 EXPRESSION TAG SEQADV 5NCL SER A 250 UNP P53894 EXPRESSION TAG SEQADV 5NCL ALA A 475 UNP P53894 ASP 475 ENGINEERED MUTATION SEQADV 5NCL GLY B 44 UNP P43563 EXPRESSION TAG SEQADV 5NCL SER B 45 UNP P43563 EXPRESSION TAG SEQRES 1 A 508 GLY SER SER PRO VAL GLN SER GLY PHE ASN ASN GLY THR SEQRES 2 A 508 ILE SER ASN TYR MET TYR PHE GLU ARG ARG PRO ASP LEU SEQRES 3 A 508 LEU THR LYS GLY THR GLN ASP LYS ALA ALA ALA VAL LYS SEQRES 4 A 508 LEU LYS ILE GLU ASN PHE TYR GLN SER SER VAL LYS TYR SEQRES 5 A 508 ALA ILE GLU ARG ASN GLU ARG ARG VAL GLU LEU GLU THR SEQRES 6 A 508 GLU LEU THR SER HIS ASN TRP SER GLU GLU ARG LYS SER SEQRES 7 A 508 ARG GLN LEU SER SER LEU GLY LYS LYS GLU SER GLN PHE SEQRES 8 A 508 LEU ARG LEU ARG ARG THR ARG LEU SER LEU GLU ASP PHE SEQRES 9 A 508 HIS THR VAL LYS VAL ILE GLY LYS GLY ALA PHE GLY GLU SEQRES 10 A 508 VAL ARG LEU VAL GLN LYS LYS ASP THR GLY LYS ILE TYR SEQRES 11 A 508 ALA MET LYS THR LEU LEU LYS SER GLU MET TYR LYS LYS SEQRES 12 A 508 ASP GLN LEU ALA HIS VAL LYS ALA GLU ARG ASP VAL LEU SEQRES 13 A 508 ALA GLY SER ASP SER PRO TRP VAL VAL SER LEU TYR TYR SEQRES 14 A 508 SER PHE GLN ASP ALA GLN TYR LEU TYR LEU ILE MET GLU SEQRES 15 A 508 PHE LEU PRO GLY GLY ASP LEU MET THR MET LEU ILE ARG SEQRES 16 A 508 TRP GLN LEU PHE THR GLU ASP VAL THR ARG PHE TYR MET SEQRES 17 A 508 ALA GLU CYS ILE LEU ALA ILE GLU THR ILE HIS LYS LEU SEQRES 18 A 508 GLY PHE ILE HIS ARG ALA ILE LYS PRO ASP ASN ILE LEU SEQRES 19 A 508 ILE ASP ILE ARG GLY HIS ILE LYS LEU SER ASP PHE GLY SEQRES 20 A 508 LEU SER THR GLY PHE HIS LYS THR HIS ASP SER ASN TYR SEQRES 21 A 508 TYR LYS LYS LEU LEU GLN GLN ASP GLU ALA THR ASN GLY SEQRES 22 A 508 ILE SER LYS PRO GLY THR TYR ASN ALA ASN THR THR ASP SEQRES 23 A 508 THR ALA ASN LYS ARG GLN THR MET VAL VAL ASP SER ILE SEQRES 24 A 508 SER LEU THR MET SER ASN ARG GLN GLN ILE GLN THR TRP SEQRES 25 A 508 ARG LYS SER ARG ARG LEU MET ALA TYR SER THR VAL GLY SEQRES 26 A 508 THR PRO ASP TYR ILE ALA PRO GLU ILE PHE LEU TYR GLN SEQRES 27 A 508 GLY TYR GLY GLN GLU CYS ASP TRP TRP SER LEU GLY ALA SEQRES 28 A 508 ILE MET TYR GLU CYS LEU ILE GLY TRP PRO PRO PHE CYS SEQRES 29 A 508 SER GLU THR PRO GLN GLU THR TYR ARG LYS ILE MET ASN SEQRES 30 A 508 PHE GLU GLN THR LEU GLN PHE PRO ASP ASP ILE HIS ILE SEQRES 31 A 508 SER TYR GLU ALA GLU ASP LEU ILE ARG ARG LEU LEU THR SEQRES 32 A 508 HIS ALA ASP GLN ARG LEU GLY ARG HIS GLY GLY ALA ASP SEQRES 33 A 508 GLU ILE LYS SER HIS PRO PHE PHE ARG GLY VAL ASP TRP SEQRES 34 A 508 ASN THR ILE ARG GLN VAL GLU ALA PRO TYR ILE PRO LYS SEQRES 35 A 508 LEU SER SER ILE THR ASP THR ARG PHE PHE PRO THR ASP SEQRES 36 A 508 GLU LEU GLU ASN VAL PRO ASP SER PRO ALA MET ALA GLN SEQRES 37 A 508 ALA ALA LYS GLN ARG GLU GLN MET THR LYS GLN GLY GLY SEQRES 38 A 508 SER ALA PRO VAL LYS GLU ASP LEU PRO PHE ILE GLY TYR SEQRES 39 A 508 THR TYR SER ARG PHE ASP TYR LEU THR ARG LYS ASN ALA SEQRES 40 A 508 LEU SEQRES 1 B 244 GLY SER ARG ASN LYS HIS HIS SER PRO LYS ARG HIS SER SEQRES 2 B 244 GLN THR SER PHE PRO ALA GLN LYS SER THR PRO GLN SER SEQRES 3 B 244 GLN GLN LEU THR SER THR THR PRO GLN SER GLN GLN GLN SEQRES 4 B 244 GLU ALA SER GLU ARG SER GLU SER GLN GLN ILE MET PHE SEQRES 5 B 244 LEU SER GLU PRO PHE VAL ARG THR ALA LEU VAL LYS GLY SEQRES 6 B 244 SER PHE LYS THR ILE VAL GLN LEU PRO LYS TYR VAL ASP SEQRES 7 B 244 LEU GLY GLU TRP ILE ALA LEU ASN VAL PHE GLU PHE PHE SEQRES 8 B 244 THR ASN LEU ASN GLN PHE TYR GLY VAL VAL ALA GLU TYR SEQRES 9 B 244 VAL THR PRO ASP ALA TYR PRO THR MET ASN ALA GLY PRO SEQRES 10 B 244 HIS THR ASP TYR LEU TRP LEU ASP ALA ASN ASN ARG GLN SEQRES 11 B 244 VAL SER LEU PRO ALA SER GLN TYR ILE ASP LEU ALA LEU SEQRES 12 B 244 THR TRP ILE ASN ASN LYS VAL ASN ASP LYS ASN LEU PHE SEQRES 13 B 244 PRO THR LYS ASN GLY LEU PRO PHE PRO GLN GLN PHE SER SEQRES 14 B 244 ARG ASP VAL GLN ARG ILE MET VAL GLN MET PHE ARG ILE SEQRES 15 B 244 PHE ALA HIS ILE TYR HIS HIS HIS PHE ASP LYS ILE VAL SEQRES 16 B 244 HIS LEU SER LEU GLU ALA HIS TRP ASN SER PHE PHE SER SEQRES 17 B 244 HIS PHE ILE SER PHE ALA LYS GLU PHE LYS ILE ILE ASP SEQRES 18 B 244 ARG LYS GLU MET ALA PRO LEU LEU PRO LEU ILE GLU SER SEQRES 19 B 244 PHE GLU LYS GLN GLY LYS ILE ILE TYR ASN SEQRES 1 D 10 THR THR GLU GLN SER ASP PHE LYS PHE PRO HET ANP A 801 31 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 4 ANP C10 H17 N6 O12 P3 HELIX 1 AA1 GLN A 280 THR A 316 1 37 HELIX 2 AA2 SER A 321 THR A 345 1 25 HELIX 3 AA3 ASP A 436 GLN A 445 1 10 HELIX 4 AA4 THR A 448 LEU A 469 1 22 HELIX 5 AA5 ASN A 553 LEU A 566 1 14 HELIX 6 AA6 ALA A 579 PHE A 583 5 5 HELIX 7 AA7 GLU A 591 GLY A 607 1 17 HELIX 8 AA8 THR A 615 ASN A 625 1 11 HELIX 9 AA9 ASN A 625 LEU A 630 1 6 HELIX 10 AB1 GLU A 641 LEU A 650 1 10 HELIX 11 AB2 HIS A 652 ARG A 656 5 5 HELIX 12 AB3 ASN A 678 VAL A 683 5 6 HELIX 13 AB4 ASP A 696 PHE A 700 5 5 HELIX 14 AB5 SER A 745 ASN A 754 1 10 HELIX 15 AB6 ASP B 121 TYR B 141 1 21 HELIX 16 AB7 GLY B 142 VAL B 148 5 7 HELIX 17 AB8 PRO B 177 ASP B 195 1 19 HELIX 18 AB9 GLN B 209 HIS B 232 1 24 HELIX 19 AC1 PHE B 234 SER B 241 5 8 HELIX 20 AC2 LEU B 242 PHE B 260 1 19 HELIX 21 AC3 ASP B 264 ALA B 269 5 6 HELIX 22 AC4 LEU B 271 PHE B 278 1 8 SHEET 1 AA1 5 HIS A 353 LYS A 360 0 SHEET 2 AA1 5 GLU A 365 GLN A 370 -1 O GLN A 370 N HIS A 353 SHEET 3 AA1 5 TYR A 378 LEU A 384 -1 O MET A 380 N ARG A 367 SHEET 4 AA1 5 TYR A 424 GLU A 430 -1 O MET A 429 N ALA A 379 SHEET 5 AA1 5 LEU A 415 GLN A 420 -1 N TYR A 416 O ILE A 428 SHEET 1 AA2 2 ILE A 481 ILE A 483 0 SHEET 2 AA2 2 ILE A 489 LEU A 491 -1 O LYS A 490 N LEU A 482 SITE 1 AC1 13 ILE A 358 GLY A 361 VAL A 366 LYS A 381 SITE 2 AC1 13 GLU A 430 LEU A 432 ASP A 436 LYS A 477 SITE 3 AC1 13 ASP A 479 ASN A 480 LEU A 482 THR A 498 SITE 4 AC1 13 PHE A 700 CRYST1 138.430 79.990 117.590 90.00 117.60 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007224 0.000000 0.003777 0.00000 SCALE2 0.000000 0.012502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009596 0.00000