HEADER TRANSFERASE 16-MAR-17 5NFX TITLE DEINOCOCCUS RADIODURANS BPHP PAS-GAF Y263F MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOPHYTOCHROME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHYTOCHROME-LIKE PROTEIN; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS R1; SOURCE 3 ORGANISM_TAXID: 243230; SOURCE 4 ATCC: 13939; SOURCE 5 GENE: BPHP, DR_A0050; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS KINASE, PHOTOSENSOR, TRANSFERASE, PHYTOCHROME EXPDTA X-RAY DIFFRACTION AUTHOR H.TAKALA,S.WESTENHOFF,J.A.IHALAINEN REVDAT 3 17-JAN-24 5NFX 1 COMPND HETNAM REVDAT 2 06-JUN-18 5NFX 1 JRNL REVDAT 1 18-APR-18 5NFX 0 JRNL AUTH H.TAKALA,H.K.LEHTIVUORI,O.BERNTSSON,A.HUGHES,R.NANEKAR, JRNL AUTH 2 S.NIEBLING,M.PANMAN,L.HENRY,A.MENZEL,S.WESTENHOFF, JRNL AUTH 3 J.A.IHALAINEN JRNL TITL ON THE (UN)COUPLING OF THE CHROMOPHORE, TONGUE INTERACTIONS, JRNL TITL 2 AND OVERALL CONFORMATION IN A BACTERIAL PHYTOCHROME. JRNL REF J. BIOL. CHEM. V. 293 8161 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29622676 JRNL DOI 10.1074/JBC.RA118.001794 REMARK 2 REMARK 2 RESOLUTION. 1.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 76244 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4013 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.34 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5617 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.5280 REMARK 3 BIN FREE R VALUE SET COUNT : 295 REMARK 3 BIN FREE R VALUE : 0.5300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2336 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 318 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.046 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.048 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.126 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.982 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2577 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2484 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3539 ; 1.754 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5700 ; 0.993 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 6.650 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;38.145 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 388 ;12.059 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;15.240 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 401 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2946 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 573 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5059 ; 2.559 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 87 ;40.650 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5219 ;13.298 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5NFX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003879. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.95 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE NOV 1, 2016 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80229 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.340 REMARK 200 RESOLUTION RANGE LOW (A) : 19.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.127 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.94 REMARK 200 R MERGE FOR SHELL (I) : 1.33300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.890 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 2O9C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, PEG 400, DTT, 2-METHYL REMARK 280 -2,4-PENTANEDIOL, PH 4.95, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.12000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.29000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.12000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.29000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 ASP A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 108 REMARK 465 ALA A 131 REMARK 465 TRP A 132 REMARK 465 ASP A 133 REMARK 465 SER A 134 REMARK 465 THR A 135 REMARK 465 GLY A 136 REMARK 465 PRO A 137 REMARK 465 HIS A 138 REMARK 465 ALA A 139 REMARK 465 GLU A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 6 N CA CB CG CD1 CD2 REMARK 470 GLY A 109 N CA REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 302 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 32.29 -144.67 REMARK 500 PRO A 106 85.00 -63.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LBV A 405 DBREF 5NFX A 1 321 UNP Q9RZA4 BPHY_DEIRA 1 321 SEQADV 5NFX MET A -13 UNP Q9RZA4 INITIATING METHIONINE SEQADV 5NFX ALA A -12 UNP Q9RZA4 EXPRESSION TAG SEQADV 5NFX SER A -11 UNP Q9RZA4 EXPRESSION TAG SEQADV 5NFX MET A -10 UNP Q9RZA4 EXPRESSION TAG SEQADV 5NFX THR A -9 UNP Q9RZA4 EXPRESSION TAG SEQADV 5NFX GLY A -8 UNP Q9RZA4 EXPRESSION TAG SEQADV 5NFX GLY A -7 UNP Q9RZA4 EXPRESSION TAG SEQADV 5NFX GLN A -6 UNP Q9RZA4 EXPRESSION TAG SEQADV 5NFX GLN A -5 UNP Q9RZA4 EXPRESSION TAG SEQADV 5NFX MET A -4 UNP Q9RZA4 EXPRESSION TAG SEQADV 5NFX GLY A -3 UNP Q9RZA4 EXPRESSION TAG SEQADV 5NFX ARG A -2 UNP Q9RZA4 EXPRESSION TAG SEQADV 5NFX GLY A -1 UNP Q9RZA4 EXPRESSION TAG SEQADV 5NFX SER A 0 UNP Q9RZA4 EXPRESSION TAG SEQADV 5NFX PHE A 263 UNP Q9RZA4 TYR 263 ENGINEERED MUTATION SEQADV 5NFX LEU A 322 UNP Q9RZA4 EXPRESSION TAG SEQADV 5NFX GLU A 323 UNP Q9RZA4 EXPRESSION TAG SEQADV 5NFX HIS A 324 UNP Q9RZA4 EXPRESSION TAG SEQADV 5NFX HIS A 325 UNP Q9RZA4 EXPRESSION TAG SEQADV 5NFX HIS A 326 UNP Q9RZA4 EXPRESSION TAG SEQADV 5NFX HIS A 327 UNP Q9RZA4 EXPRESSION TAG SEQADV 5NFX HIS A 328 UNP Q9RZA4 EXPRESSION TAG SEQADV 5NFX HIS A 329 UNP Q9RZA4 EXPRESSION TAG SEQRES 1 A 343 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SEQRES 2 A 343 SER MET SER ARG ASP PRO LEU PRO PHE PHE PRO PRO LEU SEQRES 3 A 343 TYR LEU GLY GLY PRO GLU ILE THR THR GLU ASN CYS GLU SEQRES 4 A 343 ARG GLU PRO ILE HIS ILE PRO GLY SER ILE GLN PRO HIS SEQRES 5 A 343 GLY ALA LEU LEU THR ALA ASP GLY HIS SER GLY GLU VAL SEQRES 6 A 343 LEU GLN MET SER LEU ASN ALA ALA THR PHE LEU GLY GLN SEQRES 7 A 343 GLU PRO THR VAL LEU ARG GLY GLN THR LEU ALA ALA LEU SEQRES 8 A 343 LEU PRO GLU GLN TRP PRO ALA LEU GLN ALA ALA LEU PRO SEQRES 9 A 343 PRO GLY CYS PRO ASP ALA LEU GLN TYR ARG ALA THR LEU SEQRES 10 A 343 ASP TRP PRO ALA ALA GLY HIS LEU SER LEU THR VAL HIS SEQRES 11 A 343 ARG VAL GLY GLU LEU LEU ILE LEU GLU PHE GLU PRO THR SEQRES 12 A 343 GLU ALA TRP ASP SER THR GLY PRO HIS ALA LEU ARG ASN SEQRES 13 A 343 ALA MET PHE ALA LEU GLU SER ALA PRO ASN LEU ARG ALA SEQRES 14 A 343 LEU ALA GLU VAL ALA THR GLN THR VAL ARG GLU LEU THR SEQRES 15 A 343 GLY PHE ASP ARG VAL MET LEU TYR LYS PHE ALA PRO ASP SEQRES 16 A 343 ALA THR GLY GLU VAL ILE ALA GLU ALA ARG ARG GLU GLY SEQRES 17 A 343 LEU HIS ALA PHE LEU GLY HIS ARG PHE PRO ALA SER ASP SEQRES 18 A 343 ILE PRO ALA GLN ALA ARG ALA LEU TYR THR ARG HIS LEU SEQRES 19 A 343 LEU ARG LEU THR ALA ASP THR ARG ALA ALA ALA VAL PRO SEQRES 20 A 343 LEU ASP PRO VAL LEU ASN PRO GLN THR ASN ALA PRO THR SEQRES 21 A 343 PRO LEU GLY GLY ALA VAL LEU ARG ALA THR SER PRO MET SEQRES 22 A 343 HIS MET GLN PHE LEU ARG ASN MET GLY VAL GLY SER SER SEQRES 23 A 343 LEU SER VAL SER VAL VAL VAL GLY GLY GLN LEU TRP GLY SEQRES 24 A 343 LEU ILE ALA CYS HIS HIS GLN THR PRO TYR VAL LEU PRO SEQRES 25 A 343 PRO ASP LEU ARG THR THR LEU GLU TYR LEU GLY ARG LEU SEQRES 26 A 343 LEU SER LEU GLN VAL GLN VAL LYS GLU ALA LEU GLU HIS SEQRES 27 A 343 HIS HIS HIS HIS HIS HET ACT A 401 4 HET ACT A 402 4 HET ACT A 403 4 HET MPD A 404 8 HET LBV A 405 43 HETNAM ACT ACETATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM LBV 3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3- HETNAM 2 LBV METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4- HETNAM 3 LBV METHYL-PYRROL-1-IUM -2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3- HETNAM 4 LBV ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2- HETNAM 5 LBV YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3- YL]PROPANOIC HETNAM 6 LBV ACID HETSYN LBV 2(R),3(E)- PHYTOCHROMOBILIN FORMUL 2 ACT 3(C2 H3 O2 1-) FORMUL 5 MPD C6 H14 O2 FORMUL 6 LBV C33 H37 N4 O6 1+ FORMUL 7 HOH *318(H2 O) HELIX 1 AA1 PRO A 11 GLY A 15 5 5 HELIX 2 AA2 ASN A 23 GLU A 27 5 5 HELIX 3 AA3 ASN A 57 GLY A 63 1 7 HELIX 4 AA4 GLU A 65 ARG A 70 1 6 HELIX 5 AA5 THR A 73 LEU A 78 1 6 HELIX 6 AA6 GLN A 81 LEU A 89 1 9 HELIX 7 AA7 ARG A 141 ALA A 150 1 10 HELIX 8 AA8 ASN A 152 GLY A 169 1 18 HELIX 9 AA9 PRO A 204 ILE A 208 5 5 HELIX 10 AB1 PRO A 209 HIS A 219 1 11 HELIX 11 AB2 SER A 257 MET A 267 1 11 HELIX 12 AB3 PRO A 298 LEU A 322 1 25 SHEET 1 AA1 7 SER A 34 ILE A 35 0 SHEET 2 AA1 7 VAL A 232 ASP A 235 -1 O VAL A 232 N ILE A 35 SHEET 3 AA1 7 VAL A 51 SER A 55 -1 N MET A 54 O ASP A 235 SHEET 4 AA1 7 ALA A 40 ASP A 45 -1 N THR A 43 O LEU A 52 SHEET 5 AA1 7 LEU A 121 THR A 129 -1 O LEU A 124 N LEU A 42 SHEET 6 AA1 7 HIS A 110 VAL A 118 -1 N SER A 112 O GLU A 127 SHEET 7 AA1 7 TYR A 99 LEU A 103 -1 N LEU A 103 O LEU A 111 SHEET 1 AA2 6 ARG A 202 PHE A 203 0 SHEET 2 AA2 6 GLY A 184 ARG A 191 -1 N GLY A 184 O PHE A 203 SHEET 3 AA2 6 ARG A 172 PHE A 178 -1 N LYS A 177 O GLU A 185 SHEET 4 AA2 6 GLN A 282 HIS A 291 -1 O ALA A 288 N MET A 174 SHEET 5 AA2 6 SER A 271 VAL A 279 -1 N LEU A 273 O CYS A 289 SHEET 6 AA2 6 LEU A 221 THR A 224 -1 N THR A 224 O SER A 272 LINK SG CYS A 24 CBA LBV A 405 1555 1555 1.68 CISPEP 1 ASP A 235 PRO A 236 0 -15.23 SITE 1 AC1 5 ARG A 172 LEU A 195 HIS A 290 GLN A 292 SITE 2 AC1 5 HOH A 522 SITE 1 AC2 1 HOH A 710 SITE 1 AC3 3 GLN A 262 HOH A 614 HOH A 738 SITE 1 AC4 24 CYS A 24 MET A 174 TYR A 176 PHE A 198 SITE 2 AC4 24 PHE A 203 ASP A 207 ILE A 208 PRO A 209 SITE 3 AC4 24 TYR A 216 ARG A 254 THR A 256 SER A 257 SITE 4 AC4 24 MET A 259 HIS A 260 PHE A 263 SER A 272 SITE 5 AC4 24 SER A 274 HIS A 290 HOH A 524 HOH A 527 SITE 6 AC4 24 HOH A 576 HOH A 586 HOH A 670 HOH A 692 CRYST1 94.240 54.580 70.560 90.00 92.20 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010611 0.000000 0.000407 0.00000 SCALE2 0.000000 0.018322 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014183 0.00000