HEADER HYDROLASE 20-MAR-17 5NGS TITLE CRYSTAL STRUCTURE OF HUMAN MTH1 IN COMPLEX WITH INHIBITOR 6-[(2- TITLE 2 PHENYLETHYL)SULFANYL]-7H-PURIN-2-AMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2-HYDROXY-DATP DIPHOSPHATASE,8-OXO-DGTPASE,NUCLEOSIDE COMPND 5 DIPHOSPHATE-LINKED MOIETY X MOTIF 1,NUDIX MOTIF 1; COMPND 6 EC: 3.6.1.55,3.6.1.56; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT1, MTH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS INHIBITOR, FRAGMENT, OXIDISED NUCLEOTIDES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.GUSTAFSSON,A.RUDLING,I.ALMLOF,E.HOMAN,M.SCOBIE,U.WARPMAN BERGLUND, AUTHOR 2 T.HELLEDAY,J.CARLSSON,P.STENMARK REVDAT 3 17-JAN-24 5NGS 1 REMARK REVDAT 2 25-OCT-17 5NGS 1 JRNL REVDAT 1 04-OCT-17 5NGS 0 JRNL AUTH A.RUDLING,R.GUSTAFSSON,I.ALMLOF,E.HOMAN,M.SCOBIE, JRNL AUTH 2 U.WARPMAN BERGLUND,T.HELLEDAY,P.STENMARK,J.CARLSSON JRNL TITL FRAGMENT-BASED DISCOVERY AND OPTIMIZATION OF ENZYME JRNL TITL 2 INHIBITORS BY DOCKING OF COMMERCIAL CHEMICAL SPACE. JRNL REF J. MED. CHEM. V. 60 8160 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28929756 JRNL DOI 10.1021/ACS.JMEDCHEM.7B01006 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 27427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1468 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1969 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2508 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 87 REMARK 3 SOLVENT ATOMS : 237 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.41000 REMARK 3 B22 (A**2) : -1.14000 REMARK 3 B33 (A**2) : 2.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.171 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.040 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2653 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2381 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3589 ; 1.345 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5520 ; 0.862 ; 2.987 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 306 ; 6.305 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;34.419 ;24.242 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 446 ;13.745 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;12.117 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 371 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2922 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 576 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1231 ; 1.713 ; 2.697 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1229 ; 1.711 ; 2.695 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1534 ; 2.699 ; 4.035 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1535 ; 2.698 ; 4.036 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1422 ; 2.082 ; 3.015 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1423 ; 2.082 ; 3.016 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2056 ; 3.329 ; 4.436 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2711 ; 5.445 ;29.893 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2667 ; 5.256 ;29.462 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 156 B 3 156 9296 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NGS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004111. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28944 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 28.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.78700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ZR1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MMOL/L COMPOUND AND 6 MMOL/L MGCL2 REMARK 280 WERE ADDED TO MTH1. SITTING DROP VAPOR DIFFUSION EXPERIMENTS AT REMARK 280 293K WERE PERFORMED, AND MTH1 (9.34 MG/ML) WAS MIXED WITH REMARK 280 RESERVOIR SOLUTION (28% (W/V) PEG8000, 0.1 MOL/L SODIUM ACETATE REMARK 280 PH 4.0 AND 0.2 MOL/L LISO4) IN A 3:5 RATIO., VAPOR DIFFUSION, REMARK 280 SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.09000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.56050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.18650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.56050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.09000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.18650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 47 O HOH A 301 1.86 REMARK 500 OE1 GLU A 41 O HOH A 302 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 50 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 89 -65.41 -100.78 REMARK 500 ASP B 89 -65.57 -100.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8WW A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8WW B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5NGR RELATED DB: PDB REMARK 900 RELATED ID: 5NGT RELATED DB: PDB DBREF 5NGS A 1 156 UNP P36639 8ODP_HUMAN 42 197 DBREF 5NGS B 1 156 UNP P36639 8ODP_HUMAN 42 197 SEQADV 5NGS GLY A -2 UNP P36639 EXPRESSION TAG SEQADV 5NGS SER A -1 UNP P36639 EXPRESSION TAG SEQADV 5NGS HIS A 0 UNP P36639 EXPRESSION TAG SEQADV 5NGS GLY B -2 UNP P36639 EXPRESSION TAG SEQADV 5NGS SER B -1 UNP P36639 EXPRESSION TAG SEQADV 5NGS HIS B 0 UNP P36639 EXPRESSION TAG SEQRES 1 A 159 GLY SER HIS MET GLY ALA SER ARG LEU TYR THR LEU VAL SEQRES 2 A 159 LEU VAL LEU GLN PRO GLN ARG VAL LEU LEU GLY MET LYS SEQRES 3 A 159 LYS ARG GLY PHE GLY ALA GLY ARG TRP ASN GLY PHE GLY SEQRES 4 A 159 GLY LYS VAL GLN GLU GLY GLU THR ILE GLU ASP GLY ALA SEQRES 5 A 159 ARG ARG GLU LEU GLN GLU GLU SER GLY LEU THR VAL ASP SEQRES 6 A 159 ALA LEU HIS LYS VAL GLY GLN ILE VAL PHE GLU PHE VAL SEQRES 7 A 159 GLY GLU PRO GLU LEU MET ASP VAL HIS VAL PHE CYS THR SEQRES 8 A 159 ASP SER ILE GLN GLY THR PRO VAL GLU SER ASP GLU MET SEQRES 9 A 159 ARG PRO CYS TRP PHE GLN LEU ASP GLN ILE PRO PHE LYS SEQRES 10 A 159 ASP MET TRP PRO ASP ASP SER TYR TRP PHE PRO LEU LEU SEQRES 11 A 159 LEU GLN LYS LYS LYS PHE HIS GLY TYR PHE LYS PHE GLN SEQRES 12 A 159 GLY GLN ASP THR ILE LEU ASP TYR THR LEU ARG GLU VAL SEQRES 13 A 159 ASP THR VAL SEQRES 1 B 159 GLY SER HIS MET GLY ALA SER ARG LEU TYR THR LEU VAL SEQRES 2 B 159 LEU VAL LEU GLN PRO GLN ARG VAL LEU LEU GLY MET LYS SEQRES 3 B 159 LYS ARG GLY PHE GLY ALA GLY ARG TRP ASN GLY PHE GLY SEQRES 4 B 159 GLY LYS VAL GLN GLU GLY GLU THR ILE GLU ASP GLY ALA SEQRES 5 B 159 ARG ARG GLU LEU GLN GLU GLU SER GLY LEU THR VAL ASP SEQRES 6 B 159 ALA LEU HIS LYS VAL GLY GLN ILE VAL PHE GLU PHE VAL SEQRES 7 B 159 GLY GLU PRO GLU LEU MET ASP VAL HIS VAL PHE CYS THR SEQRES 8 B 159 ASP SER ILE GLN GLY THR PRO VAL GLU SER ASP GLU MET SEQRES 9 B 159 ARG PRO CYS TRP PHE GLN LEU ASP GLN ILE PRO PHE LYS SEQRES 10 B 159 ASP MET TRP PRO ASP ASP SER TYR TRP PHE PRO LEU LEU SEQRES 11 B 159 LEU GLN LYS LYS LYS PHE HIS GLY TYR PHE LYS PHE GLN SEQRES 12 B 159 GLY GLN ASP THR ILE LEU ASP TYR THR LEU ARG GLU VAL SEQRES 13 B 159 ASP THR VAL HET 8WW A 201 19 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HET SO4 A 206 5 HET SO4 A 207 5 HET ACT A 208 4 HET 8WW B 201 19 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HETNAM 8WW 6-(2-PHENYLETHYLSULFANYL)-7~{H}-PURIN-2-AMINE HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION FORMUL 3 8WW 2(C13 H13 N5 S) FORMUL 4 SO4 9(O4 S 2-) FORMUL 10 ACT C2 H3 O2 1- FORMUL 15 HOH *237(H2 O) HELIX 1 1 ILE A 45 SER A 57 1 13 HELIX 2 2 PHE A 113 ASP A 115 5 3 HELIX 3 3 PRO A 118 LEU A 128 5 11 HELIX 4 4 ILE B 45 SER B 57 1 13 HELIX 5 5 PHE B 113 ASP B 115 5 3 HELIX 6 6 PRO B 118 LEU B 128 5 11 SHEET 1 A 6 PHE A 35 LYS A 38 0 SHEET 2 A 6 SER A 4 VAL A 12 -1 SHEET 3 A 6 LEU A 80 THR A 88 1 SHEET 4 A 6 HIS A 65 PHE A 74 -1 SHEET 5 A 6 PHE A 133 GLN A 140 1 SHEET 6 A 6 THR A 144 GLU A 152 -1 SHEET 1 B 3 VAL A 12 GLN A 14 0 SHEET 2 B 3 ARG A 17 LYS A 23 -1 SHEET 3 B 3 MET A 101 GLN A 107 -1 SHEET 1 C 6 PHE B 35 LYS B 38 0 SHEET 2 C 6 SER B 4 VAL B 12 -1 SHEET 3 C 6 LEU B 80 THR B 88 1 SHEET 4 C 6 HIS B 65 PHE B 74 -1 SHEET 5 C 6 PHE B 133 GLN B 140 1 SHEET 6 C 6 THR B 144 GLU B 152 -1 SHEET 1 D 3 VAL B 12 GLN B 14 0 SHEET 2 D 3 ARG B 17 LYS B 23 -1 SHEET 3 D 3 MET B 101 GLN B 107 -1 SITE 1 AC1 9 TYR A 7 THR A 8 ASN A 33 PHE A 72 SITE 2 AC1 9 TRP A 117 ASP A 119 ASP A 120 TRP A 123 SITE 3 AC1 9 SO4 A 206 SITE 1 AC2 4 ARG A 151 ASP A 154 THR A 155 GLU B 97 SITE 1 AC3 7 ALA A 63 HIS A 65 THR A 88 ASP A 89 SITE 2 AC3 7 SER A 90 HOH A 387 HOH A 392 SITE 1 AC4 4 HIS A 65 LYS A 66 HOH A 341 HOH A 353 SITE 1 AC5 6 GLY A 76 PRO A 95 PRO A 103 CYS A 104 SITE 2 AC5 6 TRP A 105 HOH A 332 SITE 1 AC6 6 LYS A 23 GLY A 26 PHE A 27 GLU A 100 SITE 2 AC6 6 8WW A 201 HOH A 363 SITE 1 AC7 8 LYS A 24 GLU A 97 SER A 98 ASP A 99 SITE 2 AC7 8 TYR B 122 ILE B 145 LEU B 146 HOH B 309 SITE 1 AC8 3 GLN A 54 GLU A 55 GLY A 58 SITE 1 AC9 8 TYR B 7 THR B 8 PHE B 27 ASN B 33 SITE 2 AC9 8 PHE B 72 TRP B 117 ASP B 119 ASP B 120 SITE 1 AD1 6 ARG B 151 VAL B 153 ASP B 154 THR B 155 SITE 2 AD1 6 HOH B 301 HOH B 324 SITE 1 AD2 3 HOH A 304 HIS B 134 ARG B 151 SITE 1 AD3 2 HIS B 65 LYS B 66 CRYST1 60.180 68.373 81.121 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016617 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014626 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012327 0.00000