HEADER TRANSFERASE 20-MAR-17 5NGV TITLE CRYSTAL STRUCTURE OF THE ACTIVIN RECEPTOR TYPE-2B LIGAND BINDING TITLE 2 DOMAIN IN COMPLEX WITH BIMAGRUMAB FV, ORTHORHOMBIC CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIVIN RECEPTOR TYPE-2B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN; COMPND 5 SYNONYM: ACTIVIN RECEPTOR TYPE IIB,ACTR-IIB; COMPND 6 EC: 2.7.11.30; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ANTI-HUMAN ACTRIIB MAB BYM338 HEAVY-CHAIN; COMPND 10 CHAIN: H; COMPND 11 FRAGMENT: VH; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: C-TERMINAL HIS6-TAG; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: ANTI-HUMAN ACTRIIB MAB BYM338 LIGHT-CHAIN; COMPND 16 CHAIN: L; COMPND 17 FRAGMENT: VL; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACVR2B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: SHUFFLE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VARIANT: W3110; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 MOL_ID: 3; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_COMMON: HUMAN; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 24 EXPRESSION_SYSTEM_VARIANT: W3110; SOURCE 25 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS THREE-FINGER TOXIN FOLD, ANTIBODY FV FRAGMENT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.-M.RONDEAU,S.LEHMANN REVDAT 5 17-JAN-24 5NGV 1 REMARK REVDAT 4 11-MAR-20 5NGV 1 SEQRES REVDAT 3 31-JAN-18 5NGV 1 AUTHOR JRNL REVDAT 2 29-NOV-17 5NGV 1 JRNL REVDAT 1 15-NOV-17 5NGV 0 JRNL AUTH F.MORVAN,J.-M.RONDEAU,C.ZOU,G.MINETTI,C.SCHEUFLER, JRNL AUTH 2 M.SCHARENBERG,C.JACOBI,P.BREBBIA,V.RITTER,G.TOUSSAINT, JRNL AUTH 3 C.KOELBING,X.LEBER,A.SCHILB,F.WITTE,S.LEHMANN,E.KOCH, JRNL AUTH 4 S.GEISSE,D.J.GLASS,E.LACH-TRIFILIEFF JRNL TITL BLOCKADE OF ACTIVIN TYPE II RECEPTORS WITH A DUAL JRNL TITL 2 ANTI-ACTRIIA/IIB ANTIBODY IS CRITICAL TO PROMOTE MAXIMAL JRNL TITL 3 SKELETAL MUSCLE HYPERTROPHY. JRNL REF PROC. NATL. ACAD. SCI. V. 114 12448 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29109273 JRNL DOI 10.1073/PNAS.1707925114 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 28614 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1431 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2946 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2128 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2799 REMARK 3 BIN R VALUE (WORKING SET) : 0.2122 REMARK 3 BIN FREE R VALUE : 0.2238 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.99 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2469 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.25960 REMARK 3 B22 (A**2) : -15.27200 REMARK 3 B33 (A**2) : 8.01240 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.224 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.140 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.122 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.136 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.121 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2555 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3465 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 854 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 61 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 377 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2555 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 317 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2898 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.70 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.55 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 11.8327 6.6997 18.3884 REMARK 3 T TENSOR REMARK 3 T11: -0.0718 T22: -0.1344 REMARK 3 T33: -0.0516 T12: -0.0141 REMARK 3 T13: 0.0691 T23: -0.1178 REMARK 3 L TENSOR REMARK 3 L11: 3.7418 L22: 4.1504 REMARK 3 L33: 3.5502 L12: 1.1340 REMARK 3 L13: 0.4869 L23: 1.0417 REMARK 3 S TENSOR REMARK 3 S11: -0.1370 S12: 0.2233 S13: -0.4642 REMARK 3 S21: -0.4131 S22: 0.4762 S23: -0.6070 REMARK 3 S31: 0.1455 S32: 0.5270 S33: -0.3392 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { H|* } REMARK 3 ORIGIN FOR THE GROUP (A): 8.8702 29.3308 24.2272 REMARK 3 T TENSOR REMARK 3 T11: -0.0763 T22: 0.0260 REMARK 3 T33: -0.0786 T12: 0.0073 REMARK 3 T13: 0.0090 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 2.1670 L22: 1.7276 REMARK 3 L33: 1.2748 L12: 0.9130 REMARK 3 L13: -0.1530 L23: -0.0160 REMARK 3 S TENSOR REMARK 3 S11: -0.0668 S12: 0.2208 S13: 0.1195 REMARK 3 S21: -0.0836 S22: 0.1199 S23: 0.0004 REMARK 3 S31: -0.0900 S32: -0.0862 S33: -0.0531 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { L|* } REMARK 3 ORIGIN FOR THE GROUP (A): 2.5271 21.7802 43.7457 REMARK 3 T TENSOR REMARK 3 T11: -0.0713 T22: 0.0360 REMARK 3 T33: -0.0794 T12: 0.0026 REMARK 3 T13: -0.0095 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.7064 L22: 0.8404 REMARK 3 L33: 2.3675 L12: 0.0647 REMARK 3 L13: 0.2022 L23: 0.3366 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: -0.2577 S13: -0.0968 REMARK 3 S21: 0.0429 S22: 0.0055 S23: -0.0712 REMARK 3 S31: 0.0175 S32: 0.0535 S33: -0.0034 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NGV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004121. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000010 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28674 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 17.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.439 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.33 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.1 REMARK 200 STARTING MODEL: 2H64 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M PHOSPHATE-CITRATE, 40% PEG 300, REMARK 280 PH 5.4, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.05000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.08500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.97000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.05000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.08500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.97000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.05000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.08500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.97000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.05000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.08500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.97000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 318 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 19 REMARK 465 PRO A 20 REMARK 465 LYS A 21 REMARK 465 ALA A 22 REMARK 465 MET A 23 REMARK 465 ALA A 24 REMARK 465 SER H 115 REMARK 465 HIS H 116 REMARK 465 HIS H 117 REMARK 465 HIS H 118 REMARK 465 HIS H 119 REMARK 465 HIS H 120 REMARK 465 HIS H 121 REMARK 465 SER L 113 REMARK 465 HIS L 114 REMARK 465 PRO L 115 REMARK 465 GLN L 116 REMARK 465 PHE L 117 REMARK 465 GLU L 118 REMARK 465 LYS L 119 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 53 -38.72 72.61 REMARK 500 SER A 67 63.54 66.13 REMARK 500 ASP A 80 102.81 -19.44 REMARK 500 ASP A 86 19.06 55.53 REMARK 500 ASP L 28 -90.48 -121.64 REMARK 500 VAL L 53 -54.78 73.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 L 201 DBREF 5NGV A 24 117 UNP Q13705 AVR2B_HUMAN 24 117 DBREF 5NGV H 1 121 PDB 5NGV 5NGV 1 121 DBREF 5NGV L 1 119 PDB 5NGV 5NGV 1 119 SEQADV 5NGV GLY A 19 UNP Q13705 EXPRESSION TAG SEQADV 5NGV PRO A 20 UNP Q13705 EXPRESSION TAG SEQADV 5NGV LYS A 21 UNP Q13705 EXPRESSION TAG SEQADV 5NGV ALA A 22 UNP Q13705 EXPRESSION TAG SEQADV 5NGV MET A 23 UNP Q13705 EXPRESSION TAG SEQRES 1 A 99 GLY PRO LYS ALA MET ALA GLU THR ARG GLU CYS ILE TYR SEQRES 2 A 99 TYR ASN ALA ASN TRP GLU LEU GLU ARG THR ASN GLN SER SEQRES 3 A 99 GLY LEU GLU ARG CYS GLU GLY GLU GLN ASP LYS ARG LEU SEQRES 4 A 99 HIS CYS TYR ALA SER TRP ARG ASN SER SER GLY THR ILE SEQRES 5 A 99 GLU LEU VAL LYS LYS GLY CYS TRP LEU ASP ASP PHE ASN SEQRES 6 A 99 CYS TYR ASP ARG GLN GLU CYS VAL ALA THR GLU GLU ASN SEQRES 7 A 99 PRO GLN VAL TYR PHE CYS CYS CYS GLU GLY ASN PHE CYS SEQRES 8 A 99 ASN GLU ARG PHE THR HIS LEU PRO SEQRES 1 H 121 PCA VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 121 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 121 TYR THR PHE THR SER SER TYR ILE ASN TRP VAL ARG GLN SEQRES 4 H 121 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY THR ILE ASN SEQRES 5 H 121 PRO VAL SER GLY SER THR SER TYR ALA GLN LYS PHE GLN SEQRES 6 H 121 GLY ARG VAL THR MET THR ARG ASP THR SER ILE SER THR SEQRES 7 H 121 ALA TYR MET GLU LEU SER ARG LEU ARG SER ASP ASP THR SEQRES 8 H 121 ALA VAL TYR TYR CYS ALA ARG GLY GLY TRP PHE ASP TYR SEQRES 9 H 121 TRP GLY GLN GLY THR LEU VAL THR VAL SER SER HIS HIS SEQRES 10 H 121 HIS HIS HIS HIS SEQRES 1 L 119 PCA SER ALA LEU THR GLN PRO ALA SER VAL SER GLY SER SEQRES 2 L 119 PRO GLY GLN SER ILE THR ILE SER CYS THR GLY THR SER SEQRES 3 L 119 SER ASP VAL GLY SER TYR ASN TYR VAL ASN TRP TYR GLN SEQRES 4 L 119 GLN HIS PRO GLY LYS ALA PRO LYS LEU MET ILE TYR GLY SEQRES 5 L 119 VAL SER LYS ARG PRO SER GLY VAL SER ASN ARG PHE SER SEQRES 6 L 119 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 L 119 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS GLY SEQRES 8 L 119 THR PHE ALA GLY GLY SER TYR TYR GLY VAL PHE GLY GLY SEQRES 9 L 119 GLY THR LYS LEU THR VAL LEU TRP SER HIS PRO GLN PHE SEQRES 10 L 119 GLU LYS HET PCA H 1 8 HET PCA L 1 8 HET PG4 L 201 13 HETNAM PCA PYROGLUTAMIC ACID HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 2 PCA 2(C5 H7 N O3) FORMUL 4 PG4 C8 H18 O5 FORMUL 5 HOH *174(H2 O) HELIX 1 AA1 ASN A 35 ARG A 40 1 6 HELIX 2 AA2 ASP A 81 TYR A 85 5 5 HELIX 3 AA3 PHE A 108 GLU A 111 5 4 HELIX 4 AA4 THR H 28 SER H 32 5 5 HELIX 5 AA5 GLN H 62 GLN H 65 5 4 HELIX 6 AA6 ARG H 87 THR H 91 5 5 HELIX 7 AA7 GLN L 81 GLU L 85 5 5 SHEET 1 AA1 5 SER A 44 ARG A 48 0 SHEET 2 AA1 5 GLU A 28 ASN A 33 -1 N TYR A 31 O GLY A 45 SHEET 3 AA1 5 THR A 69 LEU A 79 -1 O LYS A 75 N TYR A 32 SHEET 4 AA1 5 LEU A 57 SER A 66 -1 N ARG A 64 O GLU A 71 SHEET 5 AA1 5 TYR A 100 CYS A 104 -1 O TYR A 100 N TRP A 63 SHEET 1 AA2 2 CYS A 90 ALA A 92 0 SHEET 2 AA2 2 PHE A 113 HIS A 115 1 O THR A 114 N ALA A 92 SHEET 1 AA3 4 GLN H 3 GLN H 6 0 SHEET 2 AA3 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA3 4 THR H 78 LEU H 83 -1 O MET H 81 N VAL H 20 SHEET 4 AA3 4 VAL H 68 ASP H 73 -1 N THR H 69 O GLU H 82 SHEET 1 AA4 6 GLU H 10 LYS H 12 0 SHEET 2 AA4 6 THR H 109 VAL H 113 1 O THR H 112 N LYS H 12 SHEET 3 AA4 6 ALA H 92 ARG H 98 -1 N ALA H 92 O VAL H 111 SHEET 4 AA4 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA4 6 LEU H 45 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA4 6 THR H 58 TYR H 60 -1 O SER H 59 N THR H 50 SHEET 1 AA5 5 SER L 9 GLY L 12 0 SHEET 2 AA5 5 THR L 106 VAL L 110 1 O THR L 109 N VAL L 10 SHEET 3 AA5 5 ALA L 86 THR L 92 -1 N ALA L 86 O LEU L 108 SHEET 4 AA5 5 VAL L 35 GLN L 40 -1 N ASN L 36 O GLY L 91 SHEET 5 AA5 5 LYS L 47 ILE L 50 -1 O MET L 49 N TRP L 37 SHEET 1 AA6 3 ILE L 18 THR L 23 0 SHEET 2 AA6 3 THR L 72 ILE L 77 -1 O LEU L 75 N ILE L 20 SHEET 3 AA6 3 PHE L 64 SER L 69 -1 N SER L 67 O SER L 74 SSBOND 1 CYS A 29 CYS A 59 1555 1555 2.04 SSBOND 2 CYS A 49 CYS A 77 1555 1555 2.04 SSBOND 3 CYS A 84 CYS A 103 1555 1555 2.03 SSBOND 4 CYS A 90 CYS A 102 1555 1555 2.04 SSBOND 5 CYS A 104 CYS A 109 1555 1555 2.05 SSBOND 6 CYS H 22 CYS H 96 1555 1555 2.07 SSBOND 7 CYS L 22 CYS L 90 1555 1555 2.06 LINK C PCA H 1 N VAL H 2 1555 1555 1.34 LINK C PCA L 1 N SER L 2 1555 1555 1.32 SITE 1 AC1 10 GLU A 94 PHE A 101 TYR H 33 THR H 50 SITE 2 AC1 10 SER H 57 SER H 59 HOH H 247 GLY L 95 SITE 3 AC1 10 GLY L 96 HOH L 310 CRYST1 62.100 114.170 117.940 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016103 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008759 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008479 0.00000