HEADER HYDROLASE 23-MAR-17 5NI2 TITLE CRYSTAL STRUCTURE OF HUMAN LTA4H MUTANT E271A IN COMPLEX WITH LTA4 TITLE 2 (CRYSTAL FORM I) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUKOTRIENE A-4 HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LTA-4 HYDROLASE,LEUKOTRIENE A(4) HYDROLASE; COMPND 5 EC: 3.3.2.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LTA4H, LTA4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM101; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT3MB4 KEYWDS METALLOPEPTIDASE, EPOXIDE HYDROLASE, LEUKOTRIENE A4, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.STSIAPANAVA REVDAT 3 13-SEP-17 5NI2 1 JRNL REVDAT 2 06-SEP-17 5NI2 1 JRNL REVDAT 1 23-AUG-17 5NI2 0 JRNL AUTH A.STSIAPANAVA,B.SAMUELSSON,J.Z.HAEGGSTROM JRNL TITL CAPTURING LTA4 HYDROLASE IN ACTION: INSIGHTS TO THE JRNL TITL 2 CHEMISTRY AND DYNAMICS OF CHEMOTACTIC LTB4 SYNTHESIS. JRNL REF PROC. NATL. ACAD. SCI. V. 114 9689 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28827365 JRNL DOI 10.1073/PNAS.1710850114 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 122196 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 6121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3823 - 4.6621 1.00 4178 212 0.1782 0.1861 REMARK 3 2 4.6621 - 3.7013 1.00 4031 187 0.1351 0.1547 REMARK 3 3 3.7013 - 3.2337 1.00 3927 212 0.1578 0.1797 REMARK 3 4 3.2337 - 2.9381 1.00 3921 213 0.1686 0.1999 REMARK 3 5 2.9381 - 2.7276 1.00 3921 186 0.1554 0.1979 REMARK 3 6 2.7276 - 2.5668 1.00 3917 216 0.1554 0.1918 REMARK 3 7 2.5668 - 2.4383 1.00 3899 227 0.1568 0.1938 REMARK 3 8 2.4383 - 2.3322 1.00 3902 193 0.1537 0.1638 REMARK 3 9 2.3322 - 2.2424 1.00 3920 173 0.1524 0.1572 REMARK 3 10 2.2424 - 2.1650 1.00 3868 207 0.1544 0.1794 REMARK 3 11 2.1650 - 2.0973 1.00 3883 211 0.1645 0.2042 REMARK 3 12 2.0973 - 2.0374 1.00 3876 212 0.1653 0.1952 REMARK 3 13 2.0374 - 1.9837 1.00 3847 216 0.1722 0.1883 REMARK 3 14 1.9837 - 1.9353 0.99 3833 202 0.1831 0.2443 REMARK 3 15 1.9353 - 1.8914 1.00 3870 206 0.1968 0.2123 REMARK 3 16 1.8914 - 1.8511 1.00 3858 215 0.1932 0.2226 REMARK 3 17 1.8511 - 1.8141 1.00 3874 200 0.2032 0.2410 REMARK 3 18 1.8141 - 1.7798 1.00 3840 189 0.2316 0.2570 REMARK 3 19 1.7798 - 1.7481 1.00 3876 195 0.2453 0.2774 REMARK 3 20 1.7481 - 1.7184 1.00 3818 208 0.2482 0.2488 REMARK 3 21 1.7184 - 1.6907 1.00 3868 208 0.2484 0.2506 REMARK 3 22 1.6907 - 1.6647 1.00 3835 200 0.2571 0.2890 REMARK 3 23 1.6647 - 1.6402 1.00 3865 217 0.2693 0.2934 REMARK 3 24 1.6402 - 1.6171 1.00 3846 195 0.2808 0.3102 REMARK 3 25 1.6171 - 1.5953 1.00 3822 219 0.2992 0.3056 REMARK 3 26 1.5953 - 1.5745 1.00 3840 190 0.3065 0.3240 REMARK 3 27 1.5745 - 1.5549 0.99 3848 209 0.3158 0.3088 REMARK 3 28 1.5549 - 1.5361 1.00 3803 205 0.3394 0.3528 REMARK 3 29 1.5361 - 1.5183 0.98 3763 212 0.3568 0.3505 REMARK 3 30 1.5183 - 1.5012 0.91 3526 186 0.3672 0.3700 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5116 REMARK 3 ANGLE : 0.995 6951 REMARK 3 CHIRALITY : 0.053 773 REMARK 3 PLANARITY : 0.006 887 REMARK 3 DIHEDRAL : 14.332 1934 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESI 3:208 REMARK 3 ORIGIN FOR THE GROUP (A): -1.9118 52.7132 21.9584 REMARK 3 T TENSOR REMARK 3 T11: 0.4932 T22: 0.3266 REMARK 3 T33: 0.4224 T12: -0.1878 REMARK 3 T13: -0.1925 T23: 0.1734 REMARK 3 L TENSOR REMARK 3 L11: 0.3265 L22: 0.1253 REMARK 3 L33: 0.3030 L12: 0.0999 REMARK 3 L13: 0.0065 L23: 0.0797 REMARK 3 S TENSOR REMARK 3 S11: 0.1216 S12: -0.0390 S13: -0.0836 REMARK 3 S21: -0.1695 S22: 0.2594 S23: 0.2373 REMARK 3 S31: 0.4156 S32: -0.3347 S33: 0.2381 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESI 209:465 OR (RESI 900 AND RESNAME REMARK 3 ZN) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6729 65.7243 31.1478 REMARK 3 T TENSOR REMARK 3 T11: 0.2490 T22: 0.2697 REMARK 3 T33: 0.2843 T12: 0.0231 REMARK 3 T13: -0.0313 T23: 0.0490 REMARK 3 L TENSOR REMARK 3 L11: 0.1159 L22: 0.4302 REMARK 3 L33: 0.6965 L12: 0.0598 REMARK 3 L13: -0.1195 L23: -0.2948 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: -0.0971 S13: -0.0757 REMARK 3 S21: -0.0179 S22: 0.0570 S23: 0.0449 REMARK 3 S31: 0.1943 S32: 0.0160 S33: 0.0005 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESI 466:609 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7891 82.0586 10.8433 REMARK 3 T TENSOR REMARK 3 T11: 0.2492 T22: 0.2937 REMARK 3 T33: 0.2397 T12: 0.0002 REMARK 3 T13: -0.0106 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 0.1869 L22: 0.3990 REMARK 3 L33: 0.3692 L12: 0.1100 REMARK 3 L13: -0.0309 L23: -0.1340 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: 0.0335 S13: -0.0028 REMARK 3 S21: -0.1108 S22: 0.0643 S23: 0.0231 REMARK 3 S31: 0.0472 S32: 0.0430 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NI2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003967. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 122621 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 39.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.09879 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 2.07700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% (W/V) PEG 8000, 100 MM IMIDAZOLE REMARK 280 PH 6.7, 5 MM YBCL3, LIQUID DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 33.85500 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.71500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 33.85500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.71500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1139 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1437 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 PRO A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 610 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 352 OG SER A 380 1.60 REMARK 500 OE2 GLU A 121 O HOH A 801 1.95 REMARK 500 O HOH A 1208 O HOH A 1407 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 79 73.41 -116.63 REMARK 500 SER A 80 -120.30 31.95 REMARK 500 CYS A 274 -10.78 75.66 REMARK 500 LEU A 275 85.63 -157.49 REMARK 500 ASP A 286 10.37 -141.62 REMARK 500 PHE A 432 46.06 -96.00 REMARK 500 LYS A 546 34.06 74.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1439 DISTANCE = 6.49 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 703 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 107 OE1 REMARK 620 2 GLU A 107 OE2 51.3 REMARK 620 3 HOH A1189 O 73.2 86.0 REMARK 620 4 GLU A 127 OE1 109.9 67.4 136.1 REMARK 620 5 GLU A 127 OE2 108.9 67.0 137.2 1.6 REMARK 620 6 HOH A1164 O 116.6 77.4 144.4 10.8 10.6 REMARK 620 7 HOH A1285 O 87.7 117.6 129.7 94.0 92.8 85.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 295 NE2 REMARK 620 2 HIS A 299 NE2 102.9 REMARK 620 3 GLU A 318 OE1 100.1 114.0 REMARK 620 4 DJ3 A 704 OAT 99.0 122.8 113.0 REMARK 620 5 DJ3 A 704 OAT 98.3 123.1 113.2 0.7 REMARK 620 6 DJ3 A 704 OAT 104.1 123.1 109.1 5.7 6.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 702 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 422 OD1 REMARK 620 2 ASP A 422 OD2 53.2 REMARK 620 3 ASP A 426 OD1 76.9 105.3 REMARK 620 4 ASP A 426 OD2 94.5 77.1 53.2 REMARK 620 5 HOH A 951 O 72.7 123.7 73.1 126.2 REMARK 620 6 ASP A 481 OD1 31.1 84.0 58.9 99.3 45.8 REMARK 620 7 ASP A 481 OD2 32.5 85.4 58.4 99.7 44.5 1.4 REMARK 620 8 HOH A 828 O 76.4 72.9 147.0 148.0 80.8 88.5 88.9 REMARK 620 9 HOH A1128 O 131.0 78.2 128.5 79.2 147.3 162.1 163.4 84.0 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YB A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YB A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DJ3 A 704 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MS6 RELATED DB: PDB REMARK 900 RELATED ID: 4DPR RELATED DB: PDB DBREF 5NI2 A 1 610 UNP P09960 LKHA4_HUMAN 2 611 SEQADV 5NI2 MET A -6 UNP P09960 INITIATING METHIONINE SEQADV 5NI2 HIS A -5 UNP P09960 EXPRESSION TAG SEQADV 5NI2 HIS A -4 UNP P09960 EXPRESSION TAG SEQADV 5NI2 HIS A -3 UNP P09960 EXPRESSION TAG SEQADV 5NI2 HIS A -2 UNP P09960 EXPRESSION TAG SEQADV 5NI2 HIS A -1 UNP P09960 EXPRESSION TAG SEQADV 5NI2 HIS A 0 UNP P09960 EXPRESSION TAG SEQADV 5NI2 ALA A 271 UNP P09960 GLU 272 ENGINEERED MUTATION SEQRES 1 A 617 MET HIS HIS HIS HIS HIS HIS PRO GLU ILE VAL ASP THR SEQRES 2 A 617 CYS SER LEU ALA SER PRO ALA SER VAL CYS ARG THR LYS SEQRES 3 A 617 HIS LEU HIS LEU ARG CYS SER VAL ASP PHE THR ARG ARG SEQRES 4 A 617 THR LEU THR GLY THR ALA ALA LEU THR VAL GLN SER GLN SEQRES 5 A 617 GLU ASP ASN LEU ARG SER LEU VAL LEU ASP THR LYS ASP SEQRES 6 A 617 LEU THR ILE GLU LYS VAL VAL ILE ASN GLY GLN GLU VAL SEQRES 7 A 617 LYS TYR ALA LEU GLY GLU ARG GLN SER TYR LYS GLY SER SEQRES 8 A 617 PRO MET GLU ILE SER LEU PRO ILE ALA LEU SER LYS ASN SEQRES 9 A 617 GLN GLU ILE VAL ILE GLU ILE SER PHE GLU THR SER PRO SEQRES 10 A 617 LYS SER SER ALA LEU GLN TRP LEU THR PRO GLU GLN THR SEQRES 11 A 617 SER GLY LYS GLU HIS PRO TYR LEU PHE SER GLN CYS GLN SEQRES 12 A 617 ALA ILE HIS CYS ARG ALA ILE LEU PRO CYS GLN ASP THR SEQRES 13 A 617 PRO SER VAL LYS LEU THR TYR THR ALA GLU VAL SER VAL SEQRES 14 A 617 PRO LYS GLU LEU VAL ALA LEU MET SER ALA ILE ARG ASP SEQRES 15 A 617 GLY GLU THR PRO ASP PRO GLU ASP PRO SER ARG LYS ILE SEQRES 16 A 617 TYR LYS PHE ILE GLN LYS VAL PRO ILE PRO CYS TYR LEU SEQRES 17 A 617 ILE ALA LEU VAL VAL GLY ALA LEU GLU SER ARG GLN ILE SEQRES 18 A 617 GLY PRO ARG THR LEU VAL TRP SER GLU LYS GLU GLN VAL SEQRES 19 A 617 GLU LYS SER ALA TYR GLU PHE SER GLU THR GLU SER MET SEQRES 20 A 617 LEU LYS ILE ALA GLU ASP LEU GLY GLY PRO TYR VAL TRP SEQRES 21 A 617 GLY GLN TYR ASP LEU LEU VAL LEU PRO PRO SER PHE PRO SEQRES 22 A 617 TYR GLY GLY MET ALA ASN PRO CYS LEU THR PHE VAL THR SEQRES 23 A 617 PRO THR LEU LEU ALA GLY ASP LYS SER LEU SER ASN VAL SEQRES 24 A 617 ILE ALA HIS GLU ILE SER HIS SER TRP THR GLY ASN LEU SEQRES 25 A 617 VAL THR ASN LYS THR TRP ASP HIS PHE TRP LEU ASN GLU SEQRES 26 A 617 GLY HIS THR VAL TYR LEU GLU ARG HIS ILE CYS GLY ARG SEQRES 27 A 617 LEU PHE GLY GLU LYS PHE ARG HIS PHE ASN ALA LEU GLY SEQRES 28 A 617 GLY TRP GLY GLU LEU GLN ASN SER VAL LYS THR PHE GLY SEQRES 29 A 617 GLU THR HIS PRO PHE THR LYS LEU VAL VAL ASP LEU THR SEQRES 30 A 617 ASP ILE ASP PRO ASP VAL ALA TYR SER SER VAL PRO TYR SEQRES 31 A 617 GLU LYS GLY PHE ALA LEU LEU PHE TYR LEU GLU GLN LEU SEQRES 32 A 617 LEU GLY GLY PRO GLU ILE PHE LEU GLY PHE LEU LYS ALA SEQRES 33 A 617 TYR VAL GLU LYS PHE SER TYR LYS SER ILE THR THR ASP SEQRES 34 A 617 ASP TRP LYS ASP PHE LEU TYR SER TYR PHE LYS ASP LYS SEQRES 35 A 617 VAL ASP VAL LEU ASN GLN VAL ASP TRP ASN ALA TRP LEU SEQRES 36 A 617 TYR SER PRO GLY LEU PRO PRO ILE LYS PRO ASN TYR ASP SEQRES 37 A 617 MET THR LEU THR ASN ALA CYS ILE ALA LEU SER GLN ARG SEQRES 38 A 617 TRP ILE THR ALA LYS GLU ASP ASP LEU ASN SER PHE ASN SEQRES 39 A 617 ALA THR ASP LEU LYS ASP LEU SER SER HIS GLN LEU ASN SEQRES 40 A 617 GLU PHE LEU ALA GLN THR LEU GLN ARG ALA PRO LEU PRO SEQRES 41 A 617 LEU GLY HIS ILE LYS ARG MET GLN GLU VAL TYR ASN PHE SEQRES 42 A 617 ASN ALA ILE ASN ASN SER GLU ILE ARG PHE ARG TRP LEU SEQRES 43 A 617 ARG LEU CYS ILE GLN SER LYS TRP GLU ASP ALA ILE PRO SEQRES 44 A 617 LEU ALA LEU LYS MET ALA THR GLU GLN GLY ARG MET LYS SEQRES 45 A 617 PHE THR ARG PRO LEU PHE LYS ASP LEU ALA ALA PHE ASP SEQRES 46 A 617 LYS SER HIS ASP GLN ALA VAL ARG THR TYR GLN GLU HIS SEQRES 47 A 617 LYS ALA SER MET HIS PRO VAL THR ALA MET LEU VAL GLY SEQRES 48 A 617 LYS ASP LEU LYS VAL ASP HET ZN A 701 1 HET YB A 702 1 HET YB A 703 1 HET DJ3 A 704 156 HETNAM ZN ZINC ION HETNAM YB YTTERBIUM (III) ION HETNAM DJ3 5S-5,6-OXIDO-7,9-TRANS-11,14-CIS-EICOSATETRAENOIC ACID FORMUL 2 ZN ZN 2+ FORMUL 3 YB 2(YB 3+) FORMUL 5 DJ3 C20 H30 O3 FORMUL 6 HOH *639(H2 O) HELIX 1 AA1 GLN A 79 GLY A 83 5 5 HELIX 2 AA2 THR A 119 THR A 123 5 5 HELIX 3 AA3 HIS A 139 ILE A 143 5 5 HELIX 4 AA4 PRO A 198 ILE A 202 5 5 HELIX 5 AA5 GLU A 223 PHE A 234 1 12 HELIX 6 AA6 GLU A 236 GLY A 249 1 14 HELIX 7 AA7 PRO A 280 LEU A 283 5 4 HELIX 8 AA8 SER A 290 HIS A 299 1 10 HELIX 9 AA9 THR A 310 ASP A 312 5 3 HELIX 10 AB1 HIS A 313 GLY A 334 1 22 HELIX 11 AB2 GLY A 334 GLY A 357 1 24 HELIX 12 AB3 HIS A 360 LYS A 364 5 5 HELIX 13 AB4 ASP A 373 TYR A 378 1 6 HELIX 14 AB5 SER A 380 GLY A 398 1 19 HELIX 15 AB6 GLY A 399 SER A 415 1 17 HELIX 16 AB7 THR A 420 PHE A 432 1 13 HELIX 17 AB8 LYS A 435 ASN A 440 1 6 HELIX 18 AB9 ASP A 443 SER A 450 1 8 HELIX 19 AC1 THR A 465 THR A 477 1 13 HELIX 20 AC2 LYS A 479 PHE A 486 5 8 HELIX 21 AC3 ASN A 487 LYS A 492 5 6 HELIX 22 AC4 SER A 495 GLN A 508 1 14 HELIX 23 AC5 PRO A 513 ASN A 525 1 13 HELIX 24 AC6 PHE A 526 ILE A 529 5 4 HELIX 25 AC7 ASN A 531 SER A 545 1 15 HELIX 26 AC8 TRP A 547 ASP A 549 5 3 HELIX 27 AC9 ALA A 550 GLN A 561 1 12 HELIX 28 AD1 ARG A 563 PHE A 577 1 15 HELIX 29 AD2 PHE A 577 LYS A 592 1 16 HELIX 30 AD3 ALA A 593 MET A 595 5 3 HELIX 31 AD4 HIS A 596 LYS A 608 1 13 SHEET 1 AA1 8 GLN A 69 GLU A 70 0 SHEET 2 AA1 8 LEU A 59 ILE A 66 -1 N ILE A 66 O GLN A 69 SHEET 3 AA1 8 GLU A 99 THR A 108 -1 O SER A 105 N LYS A 63 SHEET 4 AA1 8 THR A 33 SER A 44 -1 N LEU A 40 O ILE A 102 SHEET 5 AA1 8 CYS A 16 ASP A 28 -1 N LYS A 19 O THR A 41 SHEET 6 AA1 8 LEU A 154 PRO A 163 1 O SER A 161 N VAL A 27 SHEET 7 AA1 8 ARG A 186 ILE A 197 -1 O GLN A 193 N TYR A 156 SHEET 8 AA1 8 ILE A 173 PRO A 179 -1 N ASP A 175 O LYS A 190 SHEET 1 AA2 3 LEU A 49 THR A 56 0 SHEET 2 AA2 3 SER A 84 LEU A 94 -1 O ILE A 88 N LEU A 52 SHEET 3 AA2 3 TYR A 73 LEU A 75 -1 N ALA A 74 O GLU A 87 SHEET 1 AA3 4 LEU A 115 LEU A 118 0 SHEET 2 AA3 4 TYR A 130 SER A 133 -1 O TYR A 130 N LEU A 118 SHEET 3 AA3 4 LEU A 204 GLY A 207 -1 O VAL A 206 N LEU A 131 SHEET 4 AA3 4 VAL A 167 MET A 170 -1 N VAL A 167 O GLY A 207 SHEET 1 AA4 5 GLU A 210 GLY A 215 0 SHEET 2 AA4 5 THR A 218 SER A 222 -1 O SER A 222 N GLU A 210 SHEET 3 AA4 5 ASP A 257 VAL A 260 1 O LEU A 258 N TRP A 221 SHEET 4 AA4 5 LEU A 275 VAL A 278 1 O THR A 276 N LEU A 259 SHEET 5 AA4 5 GLY A 269 MET A 270 -1 N MET A 270 O PHE A 277 SHEET 1 AA5 2 VAL A 306 ASN A 308 0 SHEET 2 AA5 2 LYS A 417 ILE A 419 1 O ILE A 419 N THR A 307 LINK OE1 GLU A 107 YB YB A 703 1555 1555 2.52 LINK OE2 GLU A 107 YB YB A 703 1555 1555 2.55 LINK NE2 HIS A 295 ZN ZN A 701 1555 1555 2.11 LINK NE2 HIS A 299 ZN ZN A 701 1555 1555 2.00 LINK OE1 GLU A 318 ZN ZN A 701 1555 1555 1.99 LINK OD1 ASP A 422 YB YB A 702 1555 1555 2.33 LINK OD2 ASP A 422 YB YB A 702 1555 1555 2.57 LINK OD1 ASP A 426 YB YB A 702 1555 1555 2.60 LINK OD2 ASP A 426 YB YB A 702 1555 1555 2.30 LINK ZN ZN A 701 OATADJ3 A 704 1555 1555 2.24 LINK ZN ZN A 701 OATBDJ3 A 704 1555 1555 2.21 LINK ZN ZN A 701 OATCDJ3 A 704 1555 1555 2.14 LINK YB YB A 702 O HOH A 951 1555 1555 2.23 LINK YB YB A 703 O HOH A1189 1555 1555 2.53 LINK OE1 GLU A 127 YB YB A 703 1555 2555 2.42 LINK OE2 GLU A 127 YB YB A 703 1555 2555 3.16 LINK OD1 ASP A 481 YB YB A 702 1555 3575 2.58 LINK OD2 ASP A 481 YB YB A 702 1555 3575 2.37 LINK YB YB A 702 O HOH A 828 1555 3475 2.38 LINK YB YB A 702 O HOH A1128 1555 3475 2.45 LINK YB YB A 703 O HOH A1164 1555 2555 2.46 LINK YB YB A 703 O HOH A1285 1555 2555 2.62 CISPEP 1 GLN A 136 ALA A 137 0 1.14 CISPEP 2 ALA A 510 PRO A 511 0 -0.07 SITE 1 AC1 5 HIS A 295 HIS A 299 GLU A 318 DJ3 A 704 SITE 2 AC1 5 HOH A 802 SITE 1 AC2 6 ASP A 422 ASP A 426 ASP A 481 HOH A 828 SITE 2 AC2 6 HOH A 951 HOH A1128 SITE 1 AC3 5 GLU A 107 GLU A 127 HOH A1164 HOH A1189 SITE 2 AC3 5 HOH A1285 SITE 1 AC4 26 GLN A 136 ALA A 137 TYR A 267 GLY A 268 SITE 2 AC4 26 GLY A 269 HIS A 295 GLU A 296 HIS A 299 SITE 3 AC4 26 TRP A 311 PHE A 314 GLU A 318 VAL A 367 SITE 4 AC4 26 PRO A 374 ALA A 377 TYR A 378 TYR A 383 SITE 5 AC4 26 ARG A 563 LYS A 565 ZN A 701 HOH A 802 SITE 6 AC4 26 HOH A 807 HOH A 825 HOH A 843 HOH A 867 SITE 7 AC4 26 HOH A 891 HOH A1192 CRYST1 67.710 84.610 133.430 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014769 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007495 0.00000