HEADER HYDROLASE 23-MAR-17 5NI6 TITLE CRYSTAL STRUCTURE OF HUMAN LTA4H MUTANT D375N IN COMPLEX WITH LTA4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUKOTRIENE A-4 HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LTA-4 HYDROLASE,LEUKOTRIENE A(4) HYDROLASE; COMPND 5 EC: 3.3.2.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LTA4H, LTA4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM101; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT3MB4 KEYWDS METALLOPEPTIDASE, EPOXIDE HYDROLASE, LEUKOTRIENE A4, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.STSIAPANAVA REVDAT 4 17-JAN-24 5NI6 1 LINK REVDAT 3 13-SEP-17 5NI6 1 JRNL REVDAT 2 06-SEP-17 5NI6 1 JRNL REVDAT 1 23-AUG-17 5NI6 0 JRNL AUTH A.STSIAPANAVA,B.SAMUELSSON,J.Z.HAEGGSTROM JRNL TITL CAPTURING LTA4 HYDROLASE IN ACTION: INSIGHTS TO THE JRNL TITL 2 CHEMISTRY AND DYNAMICS OF CHEMOTACTIC LTB4 SYNTHESIS. JRNL REF PROC. NATL. ACAD. SCI. V. 114 9689 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28827365 JRNL DOI 10.1073/PNAS.1710850114 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 100690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 5063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2461 - 4.7831 1.00 3453 174 0.1756 0.2168 REMARK 3 2 4.7831 - 3.7972 1.00 3297 160 0.1249 0.1364 REMARK 3 3 3.7972 - 3.3174 1.00 3278 162 0.1371 0.1650 REMARK 3 4 3.3174 - 3.0142 1.00 3220 168 0.1381 0.1655 REMARK 3 5 3.0142 - 2.7982 1.00 3239 185 0.1346 0.1742 REMARK 3 6 2.7982 - 2.6332 1.00 3211 181 0.1310 0.1701 REMARK 3 7 2.6332 - 2.5014 1.00 3237 153 0.1320 0.1595 REMARK 3 8 2.5014 - 2.3925 1.00 3235 159 0.1294 0.1863 REMARK 3 9 2.3925 - 2.3004 1.00 3155 185 0.1323 0.1730 REMARK 3 10 2.3004 - 2.2210 1.00 3225 171 0.1376 0.1670 REMARK 3 11 2.2210 - 2.1516 1.00 3241 140 0.1422 0.1734 REMARK 3 12 2.1516 - 2.0901 1.00 3159 166 0.1497 0.1873 REMARK 3 13 2.0901 - 2.0351 1.00 3209 155 0.1576 0.2104 REMARK 3 14 2.0351 - 1.9854 1.00 3211 157 0.1709 0.1936 REMARK 3 15 1.9854 - 1.9403 1.00 3199 163 0.1747 0.2074 REMARK 3 16 1.9403 - 1.8990 1.00 3156 169 0.1675 0.1702 REMARK 3 17 1.8990 - 1.8610 1.00 3153 173 0.1680 0.2094 REMARK 3 18 1.8610 - 1.8259 1.00 3230 156 0.1766 0.2097 REMARK 3 19 1.8259 - 1.7933 1.00 3176 163 0.1957 0.2292 REMARK 3 20 1.7933 - 1.7629 1.00 3165 183 0.2063 0.2343 REMARK 3 21 1.7629 - 1.7344 1.00 3170 159 0.2172 0.2716 REMARK 3 22 1.7344 - 1.7077 1.00 3157 175 0.2327 0.2627 REMARK 3 23 1.7077 - 1.6826 1.00 3161 204 0.2453 0.2887 REMARK 3 24 1.6826 - 1.6589 1.00 3155 164 0.2603 0.3315 REMARK 3 25 1.6589 - 1.6365 1.00 3145 183 0.2708 0.2912 REMARK 3 26 1.6365 - 1.6153 1.00 3186 169 0.2864 0.2853 REMARK 3 27 1.6153 - 1.5951 1.00 3145 179 0.2912 0.2874 REMARK 3 28 1.5951 - 1.5758 1.00 3165 168 0.2972 0.3129 REMARK 3 29 1.5758 - 1.5575 1.00 3121 186 0.2989 0.3510 REMARK 3 30 1.5575 - 1.5400 0.88 2773 153 0.3190 0.3189 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5225 REMARK 3 ANGLE : 0.947 7100 REMARK 3 CHIRALITY : 0.054 786 REMARK 3 PLANARITY : 0.007 917 REMARK 3 DIHEDRAL : 15.871 1963 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESI 3:208 REMARK 3 ORIGIN FOR THE GROUP (A): -35.6391 -14.6837 9.5892 REMARK 3 T TENSOR REMARK 3 T11: 0.2275 T22: 0.1495 REMARK 3 T33: 0.1218 T12: -0.0029 REMARK 3 T13: -0.0127 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.0385 L22: 1.8461 REMARK 3 L33: 0.7161 L12: -0.6234 REMARK 3 L13: -0.0885 L23: 0.4461 REMARK 3 S TENSOR REMARK 3 S11: -0.0765 S12: -0.1447 S13: -0.0575 REMARK 3 S21: 0.3883 S22: 0.0764 S23: -0.0475 REMARK 3 S31: 0.1391 S32: 0.0129 S33: -0.0011 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESI 209:465 REMARK 3 ORIGIN FOR THE GROUP (A): -35.4298 4.8686 -10.0577 REMARK 3 T TENSOR REMARK 3 T11: 0.1723 T22: 0.2022 REMARK 3 T33: 0.1818 T12: -0.0276 REMARK 3 T13: -0.0102 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.6662 L22: 0.9776 REMARK 3 L33: 0.7846 L12: 0.0240 REMARK 3 L13: -0.1732 L23: 0.0390 REMARK 3 S TENSOR REMARK 3 S11: -0.0730 S12: 0.0923 S13: 0.0427 REMARK 3 S21: -0.0849 S22: 0.0161 S23: -0.1107 REMARK 3 S31: -0.0032 S32: 0.0795 S33: 0.0576 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESI 466:610 REMARK 3 ORIGIN FOR THE GROUP (A): -29.8690 25.5313 5.4021 REMARK 3 T TENSOR REMARK 3 T11: 0.1167 T22: 0.1590 REMARK 3 T33: 0.1525 T12: -0.0047 REMARK 3 T13: -0.0160 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 0.4688 L22: 3.8281 REMARK 3 L33: 1.3086 L12: 0.6711 REMARK 3 L13: -0.1502 L23: -1.1807 REMARK 3 S TENSOR REMARK 3 S11: 0.0448 S12: -0.0287 S13: 0.0348 REMARK 3 S21: 0.2220 S22: -0.0336 S23: -0.0465 REMARK 3 S31: -0.0270 S32: 0.0274 S33: -0.0055 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NI6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004024. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100716 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 43.229 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.10450 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 1.72900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NI2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% (W/V) PEG 8000, 100 MM IMIDAZOLE REMARK 280 PH 7.0, 100 MM SODIUM ACETATE, 5 MM YBCL3, LIQUID DIFFUSION, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.06500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.73000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.72500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.73000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.06500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.72500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 PRO A 1 REMARK 465 GLU A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 331 O HOH A 813 1.55 REMARK 500 O HOH A 1330 O HOH A 1579 2.08 REMARK 500 O HOH A 912 O HOH A 1504 2.08 REMARK 500 OD1 ASN A 530 O HOH A 803 2.12 REMARK 500 OD2 ASP A 610 O HOH A 804 2.13 REMARK 500 OE2 GLU A 245 O HOH A 805 2.17 REMARK 500 OE1 GLN A 441 O HOH A 806 2.17 REMARK 500 O HOH A 1273 O HOH A 1401 2.18 REMARK 500 O HOH A 1252 O HOH A 1354 2.19 REMARK 500 O HOH A 1389 O HOH A 1403 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 885 O HOH A 1336 4555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 79 70.49 -116.05 REMARK 500 SER A 80 -134.28 49.26 REMARK 500 SER A 80 -134.06 48.91 REMARK 500 SER A 112 124.03 -36.61 REMARK 500 ASP A 183 98.61 -161.95 REMARK 500 GLU A 271 46.97 -79.93 REMARK 500 CYS A 274 -14.10 76.34 REMARK 500 LEU A 275 83.87 -155.21 REMARK 500 PHE A 432 43.08 -96.24 REMARK 500 LYS A 546 37.43 71.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1621 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1622 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A1623 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A1624 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A1625 DISTANCE = 7.99 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 702 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD1 REMARK 620 2 ASP A 47 OD2 55.1 REMARK 620 3 ASP A 481 OD1 24.4 37.9 REMARK 620 4 ASP A 481 OD2 24.5 37.6 0.3 REMARK 620 5 ACY A 704 O 121.7 70.1 107.9 107.6 REMARK 620 6 ACY A 704 OXT 125.5 80.2 101.1 101.1 52.7 REMARK 620 7 HOH A 866 O 143.7 145.0 167.9 167.9 77.6 90.8 REMARK 620 8 HOH A 893 O 71.9 126.8 92.7 93.0 151.4 143.4 78.7 REMARK 620 9 HOH A1255 O 79.4 80.5 93.2 93.0 73.3 126.0 77.8 86.2 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 703 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 175 OD1 REMARK 620 2 HOH A1221 O 85.1 REMARK 620 3 HOH A1372 O 68.7 93.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 295 NE2 REMARK 620 2 HIS A 299 NE2 100.1 REMARK 620 3 GLU A 318 OE1 99.5 101.8 REMARK 620 4 DJ3 A 705 OAT 101.1 131.2 117.1 REMARK 620 5 DJ3 A 705 OAT 100.1 136.3 112.4 5.3 REMARK 620 6 ACY A 706 O 100.8 149.8 95.9 21.9 16.7 REMARK 620 7 ACY A 706 OXT 91.6 95.9 157.0 40.3 45.3 62.0 REMARK 620 8 HOH A 801 O 91.5 79.6 168.4 56.5 61.5 78.3 16.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YB A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YB A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DJ3 A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 706 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MS6 RELATED DB: PDB REMARK 900 RELATED ID: 4DPR RELATED DB: PDB REMARK 900 RELATED ID: 5NI2 RELATED DB: PDB REMARK 900 RELATED ID: 5NI4 RELATED DB: PDB DBREF 5NI6 A 1 610 UNP P09960 LKHA4_HUMAN 2 611 SEQADV 5NI6 MET A -6 UNP P09960 INITIATING METHIONINE SEQADV 5NI6 HIS A -5 UNP P09960 EXPRESSION TAG SEQADV 5NI6 HIS A -4 UNP P09960 EXPRESSION TAG SEQADV 5NI6 HIS A -3 UNP P09960 EXPRESSION TAG SEQADV 5NI6 HIS A -2 UNP P09960 EXPRESSION TAG SEQADV 5NI6 HIS A -1 UNP P09960 EXPRESSION TAG SEQADV 5NI6 HIS A 0 UNP P09960 EXPRESSION TAG SEQADV 5NI6 ASN A 375 UNP P09960 ASP 376 ENGINEERED MUTATION SEQRES 1 A 617 MET HIS HIS HIS HIS HIS HIS PRO GLU ILE VAL ASP THR SEQRES 2 A 617 CYS SER LEU ALA SER PRO ALA SER VAL CYS ARG THR LYS SEQRES 3 A 617 HIS LEU HIS LEU ARG CYS SER VAL ASP PHE THR ARG ARG SEQRES 4 A 617 THR LEU THR GLY THR ALA ALA LEU THR VAL GLN SER GLN SEQRES 5 A 617 GLU ASP ASN LEU ARG SER LEU VAL LEU ASP THR LYS ASP SEQRES 6 A 617 LEU THR ILE GLU LYS VAL VAL ILE ASN GLY GLN GLU VAL SEQRES 7 A 617 LYS TYR ALA LEU GLY GLU ARG GLN SER TYR LYS GLY SER SEQRES 8 A 617 PRO MET GLU ILE SER LEU PRO ILE ALA LEU SER LYS ASN SEQRES 9 A 617 GLN GLU ILE VAL ILE GLU ILE SER PHE GLU THR SER PRO SEQRES 10 A 617 LYS SER SER ALA LEU GLN TRP LEU THR PRO GLU GLN THR SEQRES 11 A 617 SER GLY LYS GLU HIS PRO TYR LEU PHE SER GLN CYS GLN SEQRES 12 A 617 ALA ILE HIS CYS ARG ALA ILE LEU PRO CYS GLN ASP THR SEQRES 13 A 617 PRO SER VAL LYS LEU THR TYR THR ALA GLU VAL SER VAL SEQRES 14 A 617 PRO LYS GLU LEU VAL ALA LEU MET SER ALA ILE ARG ASP SEQRES 15 A 617 GLY GLU THR PRO ASP PRO GLU ASP PRO SER ARG LYS ILE SEQRES 16 A 617 TYR LYS PHE ILE GLN LYS VAL PRO ILE PRO CYS TYR LEU SEQRES 17 A 617 ILE ALA LEU VAL VAL GLY ALA LEU GLU SER ARG GLN ILE SEQRES 18 A 617 GLY PRO ARG THR LEU VAL TRP SER GLU LYS GLU GLN VAL SEQRES 19 A 617 GLU LYS SER ALA TYR GLU PHE SER GLU THR GLU SER MET SEQRES 20 A 617 LEU LYS ILE ALA GLU ASP LEU GLY GLY PRO TYR VAL TRP SEQRES 21 A 617 GLY GLN TYR ASP LEU LEU VAL LEU PRO PRO SER PHE PRO SEQRES 22 A 617 TYR GLY GLY MET GLU ASN PRO CYS LEU THR PHE VAL THR SEQRES 23 A 617 PRO THR LEU LEU ALA GLY ASP LYS SER LEU SER ASN VAL SEQRES 24 A 617 ILE ALA HIS GLU ILE SER HIS SER TRP THR GLY ASN LEU SEQRES 25 A 617 VAL THR ASN LYS THR TRP ASP HIS PHE TRP LEU ASN GLU SEQRES 26 A 617 GLY HIS THR VAL TYR LEU GLU ARG HIS ILE CYS GLY ARG SEQRES 27 A 617 LEU PHE GLY GLU LYS PHE ARG HIS PHE ASN ALA LEU GLY SEQRES 28 A 617 GLY TRP GLY GLU LEU GLN ASN SER VAL LYS THR PHE GLY SEQRES 29 A 617 GLU THR HIS PRO PHE THR LYS LEU VAL VAL ASP LEU THR SEQRES 30 A 617 ASP ILE ASP PRO ASN VAL ALA TYR SER SER VAL PRO TYR SEQRES 31 A 617 GLU LYS GLY PHE ALA LEU LEU PHE TYR LEU GLU GLN LEU SEQRES 32 A 617 LEU GLY GLY PRO GLU ILE PHE LEU GLY PHE LEU LYS ALA SEQRES 33 A 617 TYR VAL GLU LYS PHE SER TYR LYS SER ILE THR THR ASP SEQRES 34 A 617 ASP TRP LYS ASP PHE LEU TYR SER TYR PHE LYS ASP LYS SEQRES 35 A 617 VAL ASP VAL LEU ASN GLN VAL ASP TRP ASN ALA TRP LEU SEQRES 36 A 617 TYR SER PRO GLY LEU PRO PRO ILE LYS PRO ASN TYR ASP SEQRES 37 A 617 MET THR LEU THR ASN ALA CYS ILE ALA LEU SER GLN ARG SEQRES 38 A 617 TRP ILE THR ALA LYS GLU ASP ASP LEU ASN SER PHE ASN SEQRES 39 A 617 ALA THR ASP LEU LYS ASP LEU SER SER HIS GLN LEU ASN SEQRES 40 A 617 GLU PHE LEU ALA GLN THR LEU GLN ARG ALA PRO LEU PRO SEQRES 41 A 617 LEU GLY HIS ILE LYS ARG MET GLN GLU VAL TYR ASN PHE SEQRES 42 A 617 ASN ALA ILE ASN ASN SER GLU ILE ARG PHE ARG TRP LEU SEQRES 43 A 617 ARG LEU CYS ILE GLN SER LYS TRP GLU ASP ALA ILE PRO SEQRES 44 A 617 LEU ALA LEU LYS MET ALA THR GLU GLN GLY ARG MET LYS SEQRES 45 A 617 PHE THR ARG PRO LEU PHE LYS ASP LEU ALA ALA PHE ASP SEQRES 46 A 617 LYS SER HIS ASP GLN ALA VAL ARG THR TYR GLN GLU HIS SEQRES 47 A 617 LYS ALA SER MET HIS PRO VAL THR ALA MET LEU VAL GLY SEQRES 48 A 617 LYS ASP LEU LYS VAL ASP HET ZN A 701 1 HET YB A 702 1 HET YB A 703 1 HET ACY A 704 7 HET DJ3 A 705 104 HET ACY A 706 7 HETNAM ZN ZINC ION HETNAM YB YTTERBIUM (III) ION HETNAM ACY ACETIC ACID HETNAM DJ3 5S-5,6-OXIDO-7,9-TRANS-11,14-CIS-EICOSATETRAENOIC ACID FORMUL 2 ZN ZN 2+ FORMUL 3 YB 2(YB 3+) FORMUL 5 ACY 2(C2 H4 O2) FORMUL 6 DJ3 C20 H30 O3 FORMUL 8 HOH *825(H2 O) HELIX 1 AA1 GLN A 79 GLY A 83 5 5 HELIX 2 AA2 THR A 119 THR A 123 5 5 HELIX 3 AA3 HIS A 139 ILE A 143 5 5 HELIX 4 AA4 TYR A 200 ILE A 202 5 3 HELIX 5 AA5 GLU A 223 GLU A 225 5 3 HELIX 6 AA6 GLN A 226 PHE A 234 1 9 HELIX 7 AA7 GLU A 236 GLY A 249 1 14 HELIX 8 AA8 PRO A 280 LEU A 283 5 4 HELIX 9 AA9 SER A 290 HIS A 299 1 10 HELIX 10 AB1 THR A 310 ASP A 312 5 3 HELIX 11 AB2 HIS A 313 GLY A 334 1 22 HELIX 12 AB3 GLY A 334 GLY A 357 1 24 HELIX 13 AB4 HIS A 360 LYS A 364 5 5 HELIX 14 AB5 ASP A 373 TYR A 378 1 6 HELIX 15 AB6 SER A 380 LEU A 397 1 18 HELIX 16 AB7 GLY A 399 SER A 415 1 17 HELIX 17 AB8 THR A 420 PHE A 432 1 13 HELIX 18 AB9 LYS A 435 ASN A 440 1 6 HELIX 19 AC1 ASP A 443 SER A 450 1 8 HELIX 20 AC2 THR A 465 ALA A 478 1 14 HELIX 21 AC3 LYS A 479 PHE A 486 5 8 HELIX 22 AC4 ASN A 487 LYS A 492 5 6 HELIX 23 AC5 SER A 495 GLN A 508 1 14 HELIX 24 AC6 PRO A 513 ASN A 525 1 13 HELIX 25 AC7 PHE A 526 ILE A 529 5 4 HELIX 26 AC8 ASN A 531 SER A 545 1 15 HELIX 27 AC9 TRP A 547 ASP A 549 5 3 HELIX 28 AD1 ALA A 550 GLN A 561 1 12 HELIX 29 AD2 ARG A 563 PHE A 577 1 15 HELIX 30 AD3 PHE A 577 LYS A 592 1 16 HELIX 31 AD4 ALA A 593 MET A 595 5 3 HELIX 32 AD5 HIS A 596 LYS A 608 1 13 SHEET 1 AA1 8 GLN A 69 GLU A 70 0 SHEET 2 AA1 8 LEU A 59 ILE A 66 -1 N ILE A 66 O GLN A 69 SHEET 3 AA1 8 GLU A 99 THR A 108 -1 O SER A 105 N GLU A 62 SHEET 4 AA1 8 THR A 33 SER A 44 -1 N LEU A 40 O ILE A 102 SHEET 5 AA1 8 CYS A 16 ASP A 28 -1 N LYS A 19 O THR A 41 SHEET 6 AA1 8 LYS A 153 PRO A 163 1 O SER A 161 N CYS A 25 SHEET 7 AA1 8 ARG A 186 PRO A 198 -1 O GLN A 193 N TYR A 156 SHEET 8 AA1 8 ILE A 173 PRO A 179 -1 N THR A 178 O ILE A 188 SHEET 1 AA2 3 LEU A 49 THR A 56 0 SHEET 2 AA2 3 SER A 84 LEU A 94 -1 O ILE A 88 N LEU A 52 SHEET 3 AA2 3 TYR A 73 LEU A 75 -1 N ALA A 74 O GLU A 87 SHEET 1 AA3 4 LEU A 115 LEU A 118 0 SHEET 2 AA3 4 TYR A 130 SER A 133 -1 O TYR A 130 N LEU A 118 SHEET 3 AA3 4 LEU A 204 GLY A 207 -1 O VAL A 206 N LEU A 131 SHEET 4 AA3 4 VAL A 167 MET A 170 -1 N VAL A 167 O GLY A 207 SHEET 1 AA4 5 GLU A 210 GLY A 215 0 SHEET 2 AA4 5 THR A 218 SER A 222 -1 O VAL A 220 N ARG A 212 SHEET 3 AA4 5 ASP A 257 VAL A 260 1 O LEU A 258 N TRP A 221 SHEET 4 AA4 5 LEU A 275 VAL A 278 1 O VAL A 278 N LEU A 259 SHEET 5 AA4 5 GLY A 269 MET A 270 -1 N MET A 270 O PHE A 277 SHEET 1 AA5 2 VAL A 306 ASN A 308 0 SHEET 2 AA5 2 LYS A 417 ILE A 419 1 O ILE A 419 N THR A 307 LINK OD1 ASP A 47 YB YB A 702 1555 1555 2.34 LINK OD2 ASP A 47 YB YB A 702 1555 1555 2.44 LINK OD1 ASP A 175 YB YB A 703 1555 1555 2.23 LINK NE2 HIS A 295 ZN ZN A 701 1555 1555 2.09 LINK NE2 HIS A 299 ZN ZN A 701 1555 1555 2.06 LINK OE1 GLU A 318 ZN ZN A 701 1555 1555 2.04 LINK OD1 ASP A 481 YB YB A 702 1555 1565 2.49 LINK OD2 ASP A 481 YB YB A 702 1555 1565 2.34 LINK ZN ZN A 701 OATADJ3 A 705 1555 1555 2.41 LINK ZN ZN A 701 OATBDJ3 A 705 1555 1555 2.19 LINK ZN ZN A 701 O CACY A 706 1555 1555 1.86 LINK ZN ZN A 701 OXTCACY A 706 1555 1555 2.31 LINK ZN ZN A 701 O HOH A 801 1555 1555 2.55 LINK YB YB A 702 O ACY A 704 1555 1555 2.61 LINK YB YB A 702 OXT ACY A 704 1555 1555 2.32 LINK YB YB A 702 O HOH A 866 1555 1545 2.27 LINK YB YB A 702 O HOH A 893 1555 1555 2.14 LINK YB YB A 702 O HOH A1255 1555 1555 2.34 LINK YB YB A 703 O HOH A1221 1555 4445 2.49 LINK YB YB A 703 O HOH A1372 1555 1555 3.33 CISPEP 1 GLN A 136 ALA A 137 0 3.52 CISPEP 2 ALA A 510 PRO A 511 0 5.73 SITE 1 AC1 6 HIS A 295 HIS A 299 GLU A 318 DJ3 A 705 SITE 2 AC1 6 ACY A 706 HOH A 801 SITE 1 AC2 6 ASP A 47 ASP A 481 ACY A 704 HOH A 866 SITE 2 AC2 6 HOH A 893 HOH A1255 SITE 1 AC3 2 ASP A 175 HOH A1221 SITE 1 AC4 9 ASP A 47 ASN A 48 ARG A 174 LYS A 479 SITE 2 AC4 9 ASP A 481 YB A 702 HOH A 866 HOH A 962 SITE 3 AC4 9 HOH A1255 SITE 1 AC5 23 GLN A 136 ALA A 137 TYR A 267 GLY A 268 SITE 2 AC5 23 GLY A 269 HIS A 295 GLU A 296 TRP A 311 SITE 3 AC5 23 PHE A 314 GLU A 318 VAL A 367 PRO A 374 SITE 4 AC5 23 PRO A 382 TYR A 383 ARG A 563 ZN A 701 SITE 5 AC5 23 ACY A 706 HOH A 801 HOH A 861 HOH A 878 SITE 6 AC5 23 HOH A1113 HOH A1224 HOH A1306 SITE 1 AC6 10 GLY A 269 GLU A 271 HIS A 295 GLU A 296 SITE 2 AC6 10 HIS A 299 GLU A 318 TYR A 383 ZN A 701 SITE 3 AC6 10 DJ3 A 705 HOH A 801 CRYST1 78.130 87.450 99.460 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012799 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011435 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010054 0.00000