HEADER HYDROLASE 23-MAR-17 5NID TITLE CRYSTAL STRUCTURE OF HUMAN LTA4H MUTANT D375N IN OPEN CONFORMATION TITLE 2 (CRYSTAL FORM II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUKOTRIENE A-4 HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LTA-4 HYDROLASE,LEUKOTRIENE A(4) HYDROLASE; COMPND 5 EC: 3.3.2.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LTA4H, LTA4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM101; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT3MB4 KEYWDS METALLOPEPTIDASE, EPOXIDE HYDROLASE, OPEN CONFORMATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.STSIAPANAVA REVDAT 4 17-JAN-24 5NID 1 REMARK REVDAT 3 13-SEP-17 5NID 1 JRNL REVDAT 2 06-SEP-17 5NID 1 JRNL REVDAT 1 23-AUG-17 5NID 0 JRNL AUTH A.STSIAPANAVA,B.SAMUELSSON,J.Z.HAEGGSTROM JRNL TITL CAPTURING LTA4 HYDROLASE IN ACTION: INSIGHTS TO THE JRNL TITL 2 CHEMISTRY AND DYNAMICS OF CHEMOTACTIC LTB4 SYNTHESIS. JRNL REF PROC. NATL. ACAD. SCI. V. 114 9689 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28827365 JRNL DOI 10.1073/PNAS.1710850114 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 95071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 4840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4536 - 4.8702 1.00 2991 163 0.1617 0.1779 REMARK 3 2 4.8702 - 3.8663 1.00 3036 146 0.1283 0.1597 REMARK 3 3 3.8663 - 3.3778 1.00 2985 194 0.1485 0.2025 REMARK 3 4 3.3778 - 3.0690 1.00 2980 187 0.1769 0.1969 REMARK 3 5 3.0690 - 2.8491 1.00 2958 201 0.1874 0.2168 REMARK 3 6 2.8491 - 2.6811 1.00 3051 148 0.1822 0.1772 REMARK 3 7 2.6811 - 2.5469 1.00 2997 162 0.1741 0.2142 REMARK 3 8 2.5469 - 2.4360 1.00 3007 149 0.1761 0.2250 REMARK 3 9 2.4360 - 2.3422 1.00 3020 165 0.1876 0.1959 REMARK 3 10 2.3422 - 2.2614 1.00 3014 147 0.1904 0.2291 REMARK 3 11 2.2614 - 2.1907 1.00 2950 204 0.1881 0.2090 REMARK 3 12 2.1907 - 2.1281 1.00 3019 171 0.1899 0.2087 REMARK 3 13 2.1281 - 2.0721 1.00 3006 149 0.2024 0.2323 REMARK 3 14 2.0721 - 2.0215 1.00 2983 160 0.2097 0.2310 REMARK 3 15 2.0215 - 1.9756 1.00 3027 165 0.2097 0.2306 REMARK 3 16 1.9756 - 1.9335 1.00 3010 155 0.2313 0.2204 REMARK 3 17 1.9335 - 1.8948 1.00 3054 132 0.2217 0.2518 REMARK 3 18 1.8948 - 1.8591 1.00 2996 167 0.2309 0.2714 REMARK 3 19 1.8591 - 1.8259 1.00 3051 147 0.2415 0.2655 REMARK 3 20 1.8259 - 1.7949 1.00 3040 124 0.2477 0.2899 REMARK 3 21 1.7949 - 1.7660 1.00 3000 153 0.2627 0.2870 REMARK 3 22 1.7660 - 1.7388 1.00 2977 160 0.2737 0.3167 REMARK 3 23 1.7388 - 1.7132 1.00 3015 164 0.2918 0.3349 REMARK 3 24 1.7132 - 1.6891 1.00 3040 165 0.3070 0.3620 REMARK 3 25 1.6891 - 1.6663 1.00 3029 160 0.3363 0.3697 REMARK 3 26 1.6663 - 1.6446 1.00 3005 162 0.3513 0.4112 REMARK 3 27 1.6446 - 1.6241 1.00 2935 156 0.3782 0.4353 REMARK 3 28 1.6241 - 1.6045 1.00 3032 161 0.4004 0.4311 REMARK 3 29 1.6045 - 1.5858 1.00 3036 163 0.4199 0.4015 REMARK 3 30 1.5858 - 1.5680 1.00 2987 160 0.4476 0.5045 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5094 REMARK 3 ANGLE : 0.956 6936 REMARK 3 CHIRALITY : 0.057 774 REMARK 3 PLANARITY : 0.007 888 REMARK 3 DIHEDRAL : 15.179 1898 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESI 1:208 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4551 246.3435 -23.4226 REMARK 3 T TENSOR REMARK 3 T11: 0.3646 T22: 0.2972 REMARK 3 T33: 0.2205 T12: -0.0399 REMARK 3 T13: -0.0753 T23: 0.0899 REMARK 3 L TENSOR REMARK 3 L11: 1.6972 L22: 2.3682 REMARK 3 L33: 1.1008 L12: 0.0775 REMARK 3 L13: -0.3715 L23: 0.6793 REMARK 3 S TENSOR REMARK 3 S11: 0.0424 S12: -0.2923 S13: -0.2070 REMARK 3 S21: 0.5959 S22: -0.1011 S23: -0.3122 REMARK 3 S31: 0.3072 S32: -0.0471 S33: 0.0627 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESI 209:465 OR (RESI 900 AND RESNAME REMARK 3 ZN) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8212 267.3698 -38.8135 REMARK 3 T TENSOR REMARK 3 T11: 0.2895 T22: 0.2821 REMARK 3 T33: 0.3525 T12: -0.0179 REMARK 3 T13: -0.0174 T23: 0.0452 REMARK 3 L TENSOR REMARK 3 L11: 0.9903 L22: 1.7164 REMARK 3 L33: 0.7912 L12: -0.1294 REMARK 3 L13: -0.2111 L23: 0.6117 REMARK 3 S TENSOR REMARK 3 S11: -0.0116 S12: 0.0465 S13: 0.0805 REMARK 3 S21: -0.2179 S22: 0.0703 S23: -0.3041 REMARK 3 S31: -0.1314 S32: 0.0301 S33: -0.0579 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESI 466:609 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6595 257.0199 -65.0812 REMARK 3 T TENSOR REMARK 3 T11: 1.1824 T22: 0.5260 REMARK 3 T33: 0.4260 T12: -0.0644 REMARK 3 T13: 0.0690 T23: 0.0817 REMARK 3 L TENSOR REMARK 3 L11: 3.2855 L22: 1.5475 REMARK 3 L33: 2.5665 L12: 1.0056 REMARK 3 L13: -0.5383 L23: -0.8181 REMARK 3 S TENSOR REMARK 3 S11: -0.4014 S12: 0.5344 S13: 0.1800 REMARK 3 S21: -1.7764 S22: 0.3155 S23: -0.1088 REMARK 3 S31: -0.0050 S32: -0.2999 S33: 0.0469 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NID COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004141. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.7-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95099 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.568 REMARK 200 RESOLUTION RANGE LOW (A) : 44.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05894 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 1.88200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NI2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% (W/V) PEG 20 000, 15% (W/V) PEG MME REMARK 280 550, 100 MM HEPES/MOPS PH 7.7-8.0, 15 MM CACL2, 15 MM MGCL2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 76.96500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.43576 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.59667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 76.96500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 44.43576 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.59667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 76.96500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 44.43576 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.59667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 88.87153 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 51.19333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 88.87153 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 51.19333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 88.87153 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 51.19333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 ASP A 610 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 79 76.57 -114.39 REMARK 500 SER A 80 -131.21 48.15 REMARK 500 ASP A 183 104.08 -163.30 REMARK 500 GLU A 271 45.69 -81.89 REMARK 500 CYS A 274 -4.30 72.04 REMARK 500 LEU A 275 79.16 -153.27 REMARK 500 LYS A 546 62.82 65.08 REMARK 500 LEU A 607 0.45 -68.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 900 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 295 NE2 REMARK 620 2 HIS A 299 NE2 97.0 REMARK 620 3 GLU A 318 OE1 86.2 98.0 REMARK 620 4 GLU A 318 OE1 93.5 90.3 10.0 REMARK 620 5 GLU A 318 OE2 150.0 84.9 63.9 56.5 REMARK 620 6 HOH A1008 O 170.3 90.8 98.5 92.2 36.4 REMARK 620 7 HOH A1031 O 93.1 90.8 171.1 173.1 116.9 80.9 REMARK 620 8 HOH A1038 O 90.0 170.4 89.0 95.8 92.3 81.6 82.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 900 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MS6 RELATED DB: PDB REMARK 900 RELATED ID: 4DPR RELATED DB: PDB REMARK 900 RELATED ID: 5NI2 RELATED DB: PDB REMARK 900 RELATED ID: 5NI4 RELATED DB: PDB REMARK 900 RELATED ID: 5NI6 RELATED DB: PDB REMARK 900 RELATED ID: 5NIA RELATED DB: PDB DBREF 5NID A 1 610 UNP P09960 LKHA4_HUMAN 2 611 SEQADV 5NID MET A -6 UNP P09960 INITIATING METHIONINE SEQADV 5NID HIS A -5 UNP P09960 EXPRESSION TAG SEQADV 5NID HIS A -4 UNP P09960 EXPRESSION TAG SEQADV 5NID HIS A -3 UNP P09960 EXPRESSION TAG SEQADV 5NID HIS A -2 UNP P09960 EXPRESSION TAG SEQADV 5NID HIS A -1 UNP P09960 EXPRESSION TAG SEQADV 5NID HIS A 0 UNP P09960 EXPRESSION TAG SEQADV 5NID ASN A 375 UNP P09960 ASP 376 ENGINEERED MUTATION SEQRES 1 A 617 MET HIS HIS HIS HIS HIS HIS PRO GLU ILE VAL ASP THR SEQRES 2 A 617 CYS SER LEU ALA SER PRO ALA SER VAL CYS ARG THR LYS SEQRES 3 A 617 HIS LEU HIS LEU ARG CYS SER VAL ASP PHE THR ARG ARG SEQRES 4 A 617 THR LEU THR GLY THR ALA ALA LEU THR VAL GLN SER GLN SEQRES 5 A 617 GLU ASP ASN LEU ARG SER LEU VAL LEU ASP THR LYS ASP SEQRES 6 A 617 LEU THR ILE GLU LYS VAL VAL ILE ASN GLY GLN GLU VAL SEQRES 7 A 617 LYS TYR ALA LEU GLY GLU ARG GLN SER TYR LYS GLY SER SEQRES 8 A 617 PRO MET GLU ILE SER LEU PRO ILE ALA LEU SER LYS ASN SEQRES 9 A 617 GLN GLU ILE VAL ILE GLU ILE SER PHE GLU THR SER PRO SEQRES 10 A 617 LYS SER SER ALA LEU GLN TRP LEU THR PRO GLU GLN THR SEQRES 11 A 617 SER GLY LYS GLU HIS PRO TYR LEU PHE SER GLN CYS GLN SEQRES 12 A 617 ALA ILE HIS CYS ARG ALA ILE LEU PRO CYS GLN ASP THR SEQRES 13 A 617 PRO SER VAL LYS LEU THR TYR THR ALA GLU VAL SER VAL SEQRES 14 A 617 PRO LYS GLU LEU VAL ALA LEU MET SER ALA ILE ARG ASP SEQRES 15 A 617 GLY GLU THR PRO ASP PRO GLU ASP PRO SER ARG LYS ILE SEQRES 16 A 617 TYR LYS PHE ILE GLN LYS VAL PRO ILE PRO CYS TYR LEU SEQRES 17 A 617 ILE ALA LEU VAL VAL GLY ALA LEU GLU SER ARG GLN ILE SEQRES 18 A 617 GLY PRO ARG THR LEU VAL TRP SER GLU LYS GLU GLN VAL SEQRES 19 A 617 GLU LYS SER ALA TYR GLU PHE SER GLU THR GLU SER MET SEQRES 20 A 617 LEU LYS ILE ALA GLU ASP LEU GLY GLY PRO TYR VAL TRP SEQRES 21 A 617 GLY GLN TYR ASP LEU LEU VAL LEU PRO PRO SER PHE PRO SEQRES 22 A 617 TYR GLY GLY MET GLU ASN PRO CYS LEU THR PHE VAL THR SEQRES 23 A 617 PRO THR LEU LEU ALA GLY ASP LYS SER LEU SER ASN VAL SEQRES 24 A 617 ILE ALA HIS GLU ILE SER HIS SER TRP THR GLY ASN LEU SEQRES 25 A 617 VAL THR ASN LYS THR TRP ASP HIS PHE TRP LEU ASN GLU SEQRES 26 A 617 GLY HIS THR VAL TYR LEU GLU ARG HIS ILE CYS GLY ARG SEQRES 27 A 617 LEU PHE GLY GLU LYS PHE ARG HIS PHE ASN ALA LEU GLY SEQRES 28 A 617 GLY TRP GLY GLU LEU GLN ASN SER VAL LYS THR PHE GLY SEQRES 29 A 617 GLU THR HIS PRO PHE THR LYS LEU VAL VAL ASP LEU THR SEQRES 30 A 617 ASP ILE ASP PRO ASN VAL ALA TYR SER SER VAL PRO TYR SEQRES 31 A 617 GLU LYS GLY PHE ALA LEU LEU PHE TYR LEU GLU GLN LEU SEQRES 32 A 617 LEU GLY GLY PRO GLU ILE PHE LEU GLY PHE LEU LYS ALA SEQRES 33 A 617 TYR VAL GLU LYS PHE SER TYR LYS SER ILE THR THR ASP SEQRES 34 A 617 ASP TRP LYS ASP PHE LEU TYR SER TYR PHE LYS ASP LYS SEQRES 35 A 617 VAL ASP VAL LEU ASN GLN VAL ASP TRP ASN ALA TRP LEU SEQRES 36 A 617 TYR SER PRO GLY LEU PRO PRO ILE LYS PRO ASN TYR ASP SEQRES 37 A 617 MET THR LEU THR ASN ALA CYS ILE ALA LEU SER GLN ARG SEQRES 38 A 617 TRP ILE THR ALA LYS GLU ASP ASP LEU ASN SER PHE ASN SEQRES 39 A 617 ALA THR ASP LEU LYS ASP LEU SER SER HIS GLN LEU ASN SEQRES 40 A 617 GLU PHE LEU ALA GLN THR LEU GLN ARG ALA PRO LEU PRO SEQRES 41 A 617 LEU GLY HIS ILE LYS ARG MET GLN GLU VAL TYR ASN PHE SEQRES 42 A 617 ASN ALA ILE ASN ASN SER GLU ILE ARG PHE ARG TRP LEU SEQRES 43 A 617 ARG LEU CYS ILE GLN SER LYS TRP GLU ASP ALA ILE PRO SEQRES 44 A 617 LEU ALA LEU LYS MET ALA THR GLU GLN GLY ARG MET LYS SEQRES 45 A 617 PHE THR ARG PRO LEU PHE LYS ASP LEU ALA ALA PHE ASP SEQRES 46 A 617 LYS SER HIS ASP GLN ALA VAL ARG THR TYR GLN GLU HIS SEQRES 47 A 617 LYS ALA SER MET HIS PRO VAL THR ALA MET LEU VAL GLY SEQRES 48 A 617 LYS ASP LEU LYS VAL ASP HET ZN A 900 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *392(H2 O) HELIX 1 AA1 GLN A 79 GLY A 83 5 5 HELIX 2 AA2 THR A 119 THR A 123 5 5 HELIX 3 AA3 HIS A 139 ILE A 143 5 5 HELIX 4 AA4 PRO A 198 ILE A 202 5 5 HELIX 5 AA5 GLU A 223 PHE A 234 1 12 HELIX 6 AA6 GLU A 236 GLY A 249 1 14 HELIX 7 AA7 THR A 279 LEU A 283 5 5 HELIX 8 AA8 LEU A 289 VAL A 292 5 4 HELIX 9 AA9 ILE A 293 SER A 300 1 8 HELIX 10 AB1 THR A 310 HIS A 313 5 4 HELIX 11 AB2 PHE A 314 GLY A 334 1 21 HELIX 12 AB3 GLY A 334 GLY A 357 1 24 HELIX 13 AB4 HIS A 360 LYS A 364 5 5 HELIX 14 AB5 ASP A 373 ALA A 377 5 5 HELIX 15 AB6 SER A 380 LEU A 397 1 18 HELIX 16 AB7 GLY A 399 SER A 415 1 17 HELIX 17 AB8 THR A 420 PHE A 432 1 13 HELIX 18 AB9 LYS A 435 ASN A 440 1 6 HELIX 19 AC1 ASP A 443 SER A 450 1 8 HELIX 20 AC2 MET A 462 THR A 477 1 16 HELIX 21 AC3 LYS A 479 PHE A 486 5 8 HELIX 22 AC4 ASN A 487 LYS A 492 5 6 HELIX 23 AC5 SER A 495 GLN A 508 1 14 HELIX 24 AC6 PRO A 513 ASN A 525 1 13 HELIX 25 AC7 PHE A 526 ILE A 529 5 4 HELIX 26 AC8 ASN A 531 SER A 545 1 15 HELIX 27 AC9 ASP A 549 GLN A 561 1 13 HELIX 28 AD1 ARG A 563 PHE A 577 1 15 HELIX 29 AD2 PHE A 577 LYS A 592 1 16 HELIX 30 AD3 ALA A 593 MET A 595 5 3 HELIX 31 AD4 HIS A 596 LEU A 607 1 12 SHEET 1 AA1 8 GLN A 69 GLU A 70 0 SHEET 2 AA1 8 THR A 60 ILE A 66 -1 N ILE A 66 O GLN A 69 SHEET 3 AA1 8 GLU A 99 GLU A 107 -1 O SER A 105 N GLU A 62 SHEET 4 AA1 8 THR A 33 SER A 44 -1 N VAL A 42 O ILE A 100 SHEET 5 AA1 8 CYS A 16 ASP A 28 -1 N ARG A 17 O GLN A 43 SHEET 6 AA1 8 LEU A 154 PRO A 163 1 O SER A 161 N VAL A 27 SHEET 7 AA1 8 ARG A 186 ILE A 197 -1 O GLN A 193 N TYR A 156 SHEET 8 AA1 8 ILE A 173 PRO A 179 -1 N THR A 178 O ILE A 188 SHEET 1 AA2 3 LEU A 49 THR A 56 0 SHEET 2 AA2 3 SER A 84 LEU A 94 -1 O ILE A 88 N LEU A 52 SHEET 3 AA2 3 TYR A 73 LEU A 75 -1 N ALA A 74 O GLU A 87 SHEET 1 AA3 4 LEU A 115 LEU A 118 0 SHEET 2 AA3 4 TYR A 130 SER A 133 -1 O TYR A 130 N LEU A 118 SHEET 3 AA3 4 LEU A 204 GLY A 207 -1 O VAL A 206 N LEU A 131 SHEET 4 AA3 4 VAL A 167 MET A 170 -1 N VAL A 167 O GLY A 207 SHEET 1 AA4 4 GLU A 210 GLY A 215 0 SHEET 2 AA4 4 THR A 218 SER A 222 -1 O SER A 222 N GLU A 210 SHEET 3 AA4 4 ASP A 257 VAL A 260 1 O VAL A 260 N TRP A 221 SHEET 4 AA4 4 LEU A 275 VAL A 278 1 O VAL A 278 N LEU A 259 SHEET 1 AA5 2 VAL A 306 ASN A 308 0 SHEET 2 AA5 2 LYS A 417 ILE A 419 1 O ILE A 419 N THR A 307 LINK NE2 HIS A 295 ZN ZN A 900 1555 1555 2.07 LINK NE2 HIS A 299 ZN ZN A 900 1555 1555 2.03 LINK OE1AGLU A 318 ZN ZN A 900 1555 1555 2.05 LINK OE1BGLU A 318 ZN ZN A 900 1555 1555 2.08 LINK OE2AGLU A 318 ZN ZN A 900 1555 1555 2.07 LINK ZN ZN A 900 O BHOH A1008 1555 1555 2.21 LINK ZN ZN A 900 O HOH A1031 1555 1555 2.16 LINK ZN ZN A 900 O HOH A1038 1555 1555 2.15 CISPEP 1 GLN A 136 ALA A 137 0 0.01 CISPEP 2 ALA A 510 PRO A 511 0 1.98 SITE 1 AC1 6 HIS A 295 HIS A 299 GLU A 318 HOH A1008 SITE 2 AC1 6 HOH A1031 HOH A1038 CRYST1 153.930 153.930 76.790 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006496 0.003751 0.000000 0.00000 SCALE2 0.000000 0.007501 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013023 0.00000