HEADER OXIDOREDUCTASE 24-MAR-17 5NII TITLE CRYSTAL STRUCTURE OF THE ATYPICAL THIOREDOXIN REDUCTASE TRI FROM TITLE 2 DESULFOVIBRIO VULGARIS HILDENBOROUGH COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS STR. HILDENBOROUGH; SOURCE 3 ORGANISM_TAXID: 882; SOURCE 4 GENE: DVU_1457; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS THIOREDOXIN REDUCTASE, DESULFOVIBRIO, ANAEROBES, DISULFIDE STRESS, KEYWDS 2 NADPH MOTIF, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.VALETTE,T.T.I.TRAN,C.CAVAZZA,E.CAUDEVILLE,G.BRASSEUR,A.DOLLA, AUTHOR 2 E.TALLA,L.PIEULLE REVDAT 3 17-JAN-24 5NII 1 REMARK REVDAT 2 16-OCT-19 5NII 1 REMARK REVDAT 1 06-DEC-17 5NII 0 JRNL AUTH O.VALETTE,T.T.T.TRAN,C.CAVAZZA,E.CAUDEVILLE,G.BRASSEUR, JRNL AUTH 2 A.DOLLA,E.TALLA,L.PIEULLE JRNL TITL BIOCHEMICAL FUNCTION, MOLECULAR STRUCTURE AND EVOLUTION OF JRNL TITL 2 AN ATYPICAL THIOREDOXIN REDUCTASE FROM DESULFOVIBRIO JRNL TITL 3 VULGARIS. JRNL REF FRONT MICROBIOL V. 8 1855 2017 JRNL REFN ESSN 1664-302X JRNL PMID 29033913 JRNL DOI 10.3389/FMICB.2017.01855 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 50800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4935 - 5.2391 0.98 2832 148 0.1759 0.1728 REMARK 3 2 5.2391 - 4.1592 0.98 2716 143 0.1525 0.1969 REMARK 3 3 4.1592 - 3.6337 0.99 2739 144 0.1596 0.1994 REMARK 3 4 3.6337 - 3.3015 0.98 2660 140 0.1832 0.2248 REMARK 3 5 3.3015 - 3.0649 0.99 2706 142 0.1998 0.2237 REMARK 3 6 3.0649 - 2.8843 1.00 2686 142 0.2075 0.2257 REMARK 3 7 2.8843 - 2.7398 1.00 2698 142 0.2093 0.2603 REMARK 3 8 2.7398 - 2.6206 0.99 2680 141 0.2107 0.2625 REMARK 3 9 2.6206 - 2.5197 1.00 2677 141 0.2187 0.2584 REMARK 3 10 2.5197 - 2.4328 1.00 2652 139 0.2144 0.2766 REMARK 3 11 2.4328 - 2.3567 1.00 2695 142 0.2237 0.3016 REMARK 3 12 2.3567 - 2.2893 1.00 2681 141 0.2307 0.2654 REMARK 3 13 2.2893 - 2.2291 0.99 2676 141 0.2389 0.2730 REMARK 3 14 2.2291 - 2.1747 0.99 2636 139 0.2593 0.3256 REMARK 3 15 2.1747 - 2.1252 0.99 2674 141 0.2728 0.3391 REMARK 3 16 2.1252 - 2.0800 0.99 2632 139 0.2808 0.3530 REMARK 3 17 2.0800 - 2.0384 1.00 2690 141 0.3106 0.3466 REMARK 3 18 2.0384 - 1.9999 0.95 2530 134 0.3232 0.3358 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4648 REMARK 3 ANGLE : 1.289 6301 REMARK 3 CHIRALITY : 0.055 701 REMARK 3 PLANARITY : 0.005 821 REMARK 3 DIHEDRAL : 14.927 1747 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NII COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004183. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92563 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.670 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3FD8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 3350, 100 MM BISTRIS PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.19350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.08050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.44300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.19350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.08050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.44300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.19350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.08050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.44300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.19350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.08050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.44300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 408 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 299 REMARK 465 THR A 300 REMARK 465 SER A 301 REMARK 465 ARG A 302 REMARK 465 ARG A 303 REMARK 465 ASN A 304 REMARK 465 THR A 305 REMARK 465 THR A 306 REMARK 465 THR A 307 REMARK 465 GLU A 308 REMARK 465 SER A 309 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 SER B 301 REMARK 465 ARG B 302 REMARK 465 ARG B 303 REMARK 465 ASN B 304 REMARK 465 THR B 305 REMARK 465 THR B 306 REMARK 465 THR B 307 REMARK 465 GLU B 308 REMARK 465 SER B 309 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 52 O HOH A 501 1.84 REMARK 500 OG1 THR B 184 O HOH B 501 1.89 REMARK 500 O ASN B 119 O HOH B 502 1.93 REMARK 500 O HOH A 645 O HOH A 666 1.95 REMARK 500 O HOH B 596 O HOH B 614 1.98 REMARK 500 O LEU B 248 O HOH B 503 1.99 REMARK 500 OE1 GLU A 229 O HOH A 502 2.00 REMARK 500 O HOH B 508 O HOH B 588 2.01 REMARK 500 O HOH A 557 O HOH B 617 2.02 REMARK 500 OD2 ASP B 76 O HOH B 504 2.07 REMARK 500 OG1 THR B 217 O HOH B 505 2.09 REMARK 500 O HOH A 544 O HOH A 564 2.11 REMARK 500 O HOH A 629 O HOH A 656 2.12 REMARK 500 O HOH A 506 O HOH A 646 2.14 REMARK 500 O HOH B 594 O HOH B 620 2.17 REMARK 500 O HOH A 560 O HOH A 628 2.17 REMARK 500 O HOH B 577 O HOH B 600 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 655 O HOH B 510 8555 2.04 REMARK 500 O HOH A 674 O HOH B 634 8555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 205 C - N - CA ANGL. DEV. = -9.2 DEGREES REMARK 500 GLY A 269 N - CA - C ANGL. DEV. = 15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 130 -44.45 -130.59 REMARK 500 SER A 208 -20.77 -140.90 REMARK 500 ALA A 226 55.06 -147.05 REMARK 500 ALA B 39 44.28 -85.53 REMARK 500 ASP B 86 -98.26 98.00 REMARK 500 ASP B 87 -42.39 -160.90 REMARK 500 ARG B 112 128.93 -173.67 REMARK 500 SER B 118 -64.65 -27.48 REMARK 500 GLU B 124 117.47 -17.42 REMARK 500 ARG B 140 109.54 -46.72 REMARK 500 GLN B 172 -111.24 51.48 REMARK 500 LYS B 174 126.35 160.92 REMARK 500 SER B 208 -21.00 -144.31 REMARK 500 ALA B 226 59.51 -158.05 REMARK 500 ALA B 299 -105.98 162.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 265 O REMARK 620 2 THR A 268 OG1 80.0 REMARK 620 3 GLU A 280 OE1 75.2 64.1 REMARK 620 4 GLU A 280 OE2 119.3 85.1 45.8 REMARK 620 5 HOH A 618 O 94.8 174.7 113.7 96.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 DBREF 5NII A 1 309 UNP Q72C27 Q72C27_DESVH 1 309 DBREF 5NII B 1 309 UNP Q72C27 Q72C27_DESVH 1 309 SEQRES 1 A 309 MET GLU THR ARG PRO LEU VAL ILE ILE GLY ALA GLY PRO SEQRES 2 A 309 ALA GLY LEU SER ALA ALA VAL TYR THR ALA ARG ALA GLY SEQRES 3 A 309 ILE PRO THR LEU VAL PHE GLY SER ALA PRO LYS VAL ALA SEQRES 4 A 309 GLY ASP TYR ASP ILE ASP ASN TYR PHE GLY PHE ASP GLU SEQRES 5 A 309 THR ILE THR GLY ARG GLU LEU ILE GLU ARG GLY ARG ARG SEQRES 6 A 309 GLN ALA GLU ARG PHE GLY ALA VAL LEU ARG ASP ASP ARG SEQRES 7 A 309 ILE LEU GLY LEU HIS HIS GLY ASP ASP GLY GLY PHE ARG SEQRES 8 A 309 ILE THR THR GLU ALA GLY GLU THR ALA ALA CYS ALA ILE SEQRES 9 A 309 ILE LEU ALA THR GLY VAL SER ARG VAL ARG PRO GLY ILE SEQRES 10 A 309 SER ASN ILE ALA ASP TYR GLU GLY LYS GLY VAL SER TYR SEQRES 11 A 309 CYS VAL SER CYS ASP GLY PHE PHE TYR ARG GLY LEU ARG SEQRES 12 A 309 VAL LYS VAL LEU GLY GLU GLY VAL PHE ALA ALA ASN GLN SEQRES 13 A 309 ALA LEU GLU LEU LEU HIS TYR THR PRO HIS VAL SER ILE SEQRES 14 A 309 CYS THR GLN GLY LYS ALA ALA SER ILE THR PRO GLU PHE SEQRES 15 A 309 MET THR ARG LEU ASP GLU ALA GLY ILE ALA VAL ASP ASP SEQRES 16 A 309 ARG LYS ILE ALA SER LEU GLU GLY THR PRO ALA LEU SER SEQRES 17 A 309 VAL LEU ARG TYR GLU ASP GLY SER THR GLU GLU ALA GLN SEQRES 18 A 309 GLY LEU PHE ILE ALA MET GLY GLU ALA SER SER LEU ASP SEQRES 19 A 309 PHE ALA TYR THR LEU GLY VAL GLU ARG ASN GLY VAL PHE SEQRES 20 A 309 LEU GLY ALA ASP SER ASP GLN ARG THR ASN ILE PRO GLY SEQRES 21 A 309 VAL PHE ALA ALA GLY ASP CYS THR GLY GLY PHE LEU GLN SEQRES 22 A 309 ILE ALA VAL ALA VAL GLY GLU GLY ALA LYS ALA ALA ARG SEQRES 23 A 309 ALA ALA ILE SER TYR ILE LYS GLU GLU CYS PRO PHE ALA SEQRES 24 A 309 THR SER ARG ARG ASN THR THR THR GLU SER SEQRES 1 B 309 MET GLU THR ARG PRO LEU VAL ILE ILE GLY ALA GLY PRO SEQRES 2 B 309 ALA GLY LEU SER ALA ALA VAL TYR THR ALA ARG ALA GLY SEQRES 3 B 309 ILE PRO THR LEU VAL PHE GLY SER ALA PRO LYS VAL ALA SEQRES 4 B 309 GLY ASP TYR ASP ILE ASP ASN TYR PHE GLY PHE ASP GLU SEQRES 5 B 309 THR ILE THR GLY ARG GLU LEU ILE GLU ARG GLY ARG ARG SEQRES 6 B 309 GLN ALA GLU ARG PHE GLY ALA VAL LEU ARG ASP ASP ARG SEQRES 7 B 309 ILE LEU GLY LEU HIS HIS GLY ASP ASP GLY GLY PHE ARG SEQRES 8 B 309 ILE THR THR GLU ALA GLY GLU THR ALA ALA CYS ALA ILE SEQRES 9 B 309 ILE LEU ALA THR GLY VAL SER ARG VAL ARG PRO GLY ILE SEQRES 10 B 309 SER ASN ILE ALA ASP TYR GLU GLY LYS GLY VAL SER TYR SEQRES 11 B 309 CYS VAL SER CYS ASP GLY PHE PHE TYR ARG GLY LEU ARG SEQRES 12 B 309 VAL LYS VAL LEU GLY GLU GLY VAL PHE ALA ALA ASN GLN SEQRES 13 B 309 ALA LEU GLU LEU LEU HIS TYR THR PRO HIS VAL SER ILE SEQRES 14 B 309 CYS THR GLN GLY LYS ALA ALA SER ILE THR PRO GLU PHE SEQRES 15 B 309 MET THR ARG LEU ASP GLU ALA GLY ILE ALA VAL ASP ASP SEQRES 16 B 309 ARG LYS ILE ALA SER LEU GLU GLY THR PRO ALA LEU SER SEQRES 17 B 309 VAL LEU ARG TYR GLU ASP GLY SER THR GLU GLU ALA GLN SEQRES 18 B 309 GLY LEU PHE ILE ALA MET GLY GLU ALA SER SER LEU ASP SEQRES 19 B 309 PHE ALA TYR THR LEU GLY VAL GLU ARG ASN GLY VAL PHE SEQRES 20 B 309 LEU GLY ALA ASP SER ASP GLN ARG THR ASN ILE PRO GLY SEQRES 21 B 309 VAL PHE ALA ALA GLY ASP CYS THR GLY GLY PHE LEU GLN SEQRES 22 B 309 ILE ALA VAL ALA VAL GLY GLU GLY ALA LYS ALA ALA ARG SEQRES 23 B 309 ALA ALA ILE SER TYR ILE LYS GLU GLU CYS PRO PHE ALA SEQRES 24 B 309 THR SER ARG ARG ASN THR THR THR GLU SER HET FAD A 401 53 HET NA A 402 1 HET CL A 403 1 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET CL A 408 1 HET GOL A 409 6 HET CL A 410 1 HET FAD B 401 53 HET CL B 402 1 HET GOL B 403 6 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 NA NA 1+ FORMUL 5 CL 4(CL 1-) FORMUL 6 GOL 6(C3 H8 O3) FORMUL 16 HOH *318(H2 O) HELIX 1 AA1 GLY A 12 ALA A 25 1 14 HELIX 2 AA2 GLY A 56 PHE A 70 1 15 HELIX 3 AA3 ASN A 119 GLU A 124 5 6 HELIX 4 AA4 CYS A 131 GLY A 136 1 6 HELIX 5 AA5 PHE A 137 ARG A 140 5 4 HELIX 6 AA6 GLY A 150 LEU A 161 1 12 HELIX 7 AA7 THR A 179 GLY A 190 1 12 HELIX 8 AA8 SER A 231 GLY A 240 1 10 HELIX 9 AA9 GLY A 265 GLY A 269 5 5 HELIX 10 AB1 GLN A 273 CYS A 296 1 24 HELIX 11 AB2 GLY B 12 ALA B 25 1 14 HELIX 12 AB3 GLY B 56 PHE B 70 1 15 HELIX 13 AB4 ASN B 119 GLU B 124 5 6 HELIX 14 AB5 CYS B 131 GLY B 136 1 6 HELIX 15 AB6 PHE B 137 ARG B 140 5 4 HELIX 16 AB7 GLY B 150 LEU B 160 1 11 HELIX 17 AB8 LEU B 161 TYR B 163 5 3 HELIX 18 AB9 THR B 179 ALA B 189 1 11 HELIX 19 AC1 SER B 231 GLY B 240 1 10 HELIX 20 AC2 GLY B 265 GLY B 269 5 5 HELIX 21 AC3 GLN B 273 CYS B 296 1 24 SHEET 1 AA1 6 VAL A 73 ARG A 75 0 SHEET 2 AA1 6 LEU A 30 PHE A 32 1 N VAL A 31 O VAL A 73 SHEET 3 AA1 6 ARG A 4 ILE A 9 1 N ILE A 8 O LEU A 30 SHEET 4 AA1 6 GLU A 98 LEU A 106 1 O ILE A 105 N ILE A 9 SHEET 5 AA1 6 PHE A 90 THR A 94 -1 N ILE A 92 O THR A 99 SHEET 6 AA1 6 ILE A 79 HIS A 84 -1 N HIS A 83 O ARG A 91 SHEET 1 AA2 5 VAL A 73 ARG A 75 0 SHEET 2 AA2 5 LEU A 30 PHE A 32 1 N VAL A 31 O VAL A 73 SHEET 3 AA2 5 ARG A 4 ILE A 9 1 N ILE A 8 O LEU A 30 SHEET 4 AA2 5 GLU A 98 LEU A 106 1 O ILE A 105 N ILE A 9 SHEET 5 AA2 5 VAL A 261 ALA A 263 1 O PHE A 262 N LEU A 106 SHEET 1 AA3 2 ASP A 43 ILE A 44 0 SHEET 2 AA3 2 ILE A 54 THR A 55 -1 O ILE A 54 N ILE A 44 SHEET 1 AA4 5 VAL A 128 SER A 129 0 SHEET 2 AA4 5 GLY A 222 ILE A 225 1 O LEU A 223 N SER A 129 SHEET 3 AA4 5 VAL A 144 LEU A 147 1 N LEU A 147 O PHE A 224 SHEET 4 AA4 5 VAL A 167 CYS A 170 1 O SER A 168 N VAL A 146 SHEET 5 AA4 5 ALA A 192 ASP A 194 1 O ALA A 192 N ILE A 169 SHEET 1 AA5 3 ILE A 198 GLU A 202 0 SHEET 2 AA5 3 VAL A 209 TYR A 212 -1 O VAL A 209 N GLU A 202 SHEET 3 AA5 3 THR A 217 GLU A 219 -1 O GLU A 218 N LEU A 210 SHEET 1 AA6 2 ARG A 243 ASN A 244 0 SHEET 2 AA6 2 PHE A 247 LEU A 248 -1 O PHE A 247 N ASN A 244 SHEET 1 AA7 5 VAL B 73 LEU B 74 0 SHEET 2 AA7 5 LEU B 30 PHE B 32 1 N VAL B 31 O VAL B 73 SHEET 3 AA7 5 LEU B 6 ILE B 9 1 N ILE B 8 O LEU B 30 SHEET 4 AA7 5 ALA B 103 LEU B 106 1 O ILE B 105 N ILE B 9 SHEET 5 AA7 5 VAL B 261 ALA B 263 1 O PHE B 262 N LEU B 106 SHEET 1 AA8 2 ASP B 43 ILE B 44 0 SHEET 2 AA8 2 ILE B 54 THR B 55 -1 O ILE B 54 N ILE B 44 SHEET 1 AA9 3 ILE B 79 HIS B 83 0 SHEET 2 AA9 3 PHE B 90 THR B 94 -1 O THR B 93 N LEU B 80 SHEET 3 AA9 3 GLY B 97 ALA B 101 -1 O THR B 99 N ILE B 92 SHEET 1 AB1 5 VAL B 128 SER B 129 0 SHEET 2 AB1 5 GLY B 222 ILE B 225 1 O ILE B 225 N SER B 129 SHEET 3 AB1 5 VAL B 144 LEU B 147 1 N LYS B 145 O GLY B 222 SHEET 4 AB1 5 VAL B 167 CYS B 170 1 O CYS B 170 N VAL B 146 SHEET 5 AB1 5 VAL B 193 ASP B 194 1 O ASP B 194 N ILE B 169 SHEET 1 AB2 3 ILE B 198 GLU B 202 0 SHEET 2 AB2 3 VAL B 209 TYR B 212 -1 O VAL B 209 N GLU B 202 SHEET 3 AB2 3 THR B 217 GLU B 219 -1 O GLU B 218 N LEU B 210 SHEET 1 AB3 2 ARG B 243 ASN B 244 0 SHEET 2 AB3 2 PHE B 247 LEU B 248 -1 O PHE B 247 N ASN B 244 SSBOND 1 CYS A 102 CYS A 296 1555 1555 2.03 SSBOND 2 CYS A 131 CYS A 134 1555 1555 2.10 SSBOND 3 CYS B 102 CYS B 296 1555 1555 2.04 SSBOND 4 CYS B 131 CYS B 134 1555 1555 2.05 LINK O GLY A 265 NA NA A 402 1555 1555 2.26 LINK OG1 THR A 268 NA NA A 402 1555 1555 2.42 LINK OE1 GLU A 280 NA NA A 402 1555 1555 2.89 LINK OE2 GLU A 280 NA NA A 402 1555 1555 2.76 LINK NA NA A 402 O HOH A 618 1555 1555 2.17 CISPEP 1 ASP A 86 ASP A 87 0 -8.56 CISPEP 2 GLY B 88 GLY B 89 0 7.30 CISPEP 3 GLY B 173 LYS B 174 0 -17.60 CISPEP 4 GLU B 202 GLY B 203 0 -7.09 CISPEP 5 THR B 204 PRO B 205 0 5.62 CISPEP 6 PHE B 298 ALA B 299 0 7.45 SITE 1 AC1 36 GLY A 10 ALA A 11 GLY A 12 PRO A 13 SITE 2 AC1 36 ALA A 14 GLY A 33 SER A 34 PRO A 36 SITE 3 AC1 36 LYS A 37 VAL A 38 TYR A 42 ILE A 44 SITE 4 AC1 36 ASN A 46 ARG A 78 ILE A 79 ALA A 107 SITE 5 AC1 36 THR A 108 GLY A 109 ALA A 230 GLY A 265 SITE 6 AC1 36 ASP A 266 LEU A 272 GLN A 273 ILE A 274 SITE 7 AC1 36 HOH A 511 HOH A 522 HOH A 539 HOH A 543 SITE 8 AC1 36 HOH A 548 HOH A 562 HOH A 563 HOH A 600 SITE 9 AC1 36 TYR B 21 ALA B 39 ASP B 41 ARG B 57 SITE 1 AC2 6 GLY A 265 THR A 268 GLY A 269 GLY A 270 SITE 2 AC2 6 GLU A 280 HOH A 618 SITE 1 AC3 6 ILE A 44 ASP A 45 ASN A 46 TYR A 47 SITE 2 AC3 6 PHE A 50 GLN B 66 SITE 1 AC4 10 VAL A 113 ARG A 114 GLN A 172 LYS A 197 SITE 2 AC4 10 MET A 227 GLU B 68 ALA B 72 VAL B 73 SITE 3 AC4 10 LEU B 74 HOH B 540 SITE 1 AC5 5 GLU A 61 ARG A 64 ARG A 65 GLU A 68 SITE 2 AC5 5 HOH A 593 SITE 1 AC6 5 ASP A 51 GLU A 52 HOH A 578 HOH A 592 SITE 2 AC6 5 ARG B 62 SITE 1 AC7 4 GLU A 52 THR A 53 ARG A 62 HOH A 592 SITE 1 AC8 3 TYR A 130 CYS A 131 ASP A 135 SITE 1 AC9 1 ASP A 122 SITE 1 AD1 33 GLY B 10 ALA B 11 GLY B 12 PRO B 13 SITE 2 AD1 33 ALA B 14 GLY B 33 SER B 34 PRO B 36 SITE 3 AD1 33 VAL B 38 TYR B 42 ILE B 44 ASN B 46 SITE 4 AD1 33 ILE B 79 ALA B 107 THR B 108 GLY B 109 SITE 5 AD1 33 ALA B 230 GLY B 265 ASP B 266 LEU B 272 SITE 6 AD1 33 GLN B 273 ILE B 274 ALA B 277 HOH B 509 SITE 7 AD1 33 HOH B 513 HOH B 523 HOH B 527 HOH B 534 SITE 8 AD1 33 HOH B 539 HOH B 542 HOH B 567 HOH B 570 SITE 9 AD1 33 HOH B 581 SITE 1 AD2 6 GLN A 66 ILE B 44 ASP B 45 ASN B 46 SITE 2 AD2 6 TYR B 47 PHE B 50 SITE 1 AD3 5 ARG A 62 ARG A 65 ASP B 51 GLU B 52 SITE 2 AD3 5 HOH B 589 CRYST1 66.387 148.161 152.886 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015063 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006749 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006541 0.00000