HEADER HYDROLASE 27-MAR-17 5NJ2 TITLE CRYSTAL STRUCTURE OF BLAC FROM MYCOBACTERIUM TUBERCULOSIS BOUND TO TITLE 2 PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: BLAC, ERS027646_02769; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.TASSONI,N.S.PANNU,M.UBBINK REVDAT 3 17-JAN-24 5NJ2 1 REMARK REVDAT 2 06-DEC-17 5NJ2 1 JRNL REVDAT 1 15-NOV-17 5NJ2 0 JRNL AUTH W.ELINGS,R.TASSONI,S.A.VAN DER SCHOOT,W.LUU,J.P.KYNAST, JRNL AUTH 2 L.DAI,A.J.BLOK,M.TIMMER,B.I.FLOREA,N.S.PANNU,M.UBBINK JRNL TITL PHOSPHATE PROMOTES THE RECOVERY OF MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS BETA-LACTAMASE FROM CLAVULANIC ACID INHIBITION. JRNL REF BIOCHEMISTRY V. 56 6257 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 29087696 JRNL DOI 10.1021/ACS.BIOCHEM.7B00556 REMARK 2 REMARK 2 RESOLUTION. 1.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 7.0.033 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 62.7 REMARK 3 NUMBER OF REFLECTIONS : 92053 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4773 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 383 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 3.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 15 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4045 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 288 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.32000 REMARK 3 B22 (A**2) : 0.71000 REMARK 3 B33 (A**2) : -0.37000 REMARK 3 B12 (A**2) : 0.32000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : -0.01000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.829 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4206 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3899 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5726 ; 2.185 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8985 ; 1.124 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 541 ; 6.294 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;37.498 ;22.989 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 623 ;11.445 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;21.668 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 652 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4744 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 863 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2156 ; 1.315 ; 1.062 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2151 ; 1.299 ; 1.059 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2685 ; 1.933 ; 1.590 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2686 ; 1.935 ; 1.590 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2050 ; 2.234 ; 1.307 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2051 ; 2.234 ; 1.308 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3038 ; 3.137 ; 1.880 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4665 ; 3.833 ;13.280 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4666 ; 3.833 ;13.285 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 30 293 B 30 293 17232 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NJ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004211. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96841 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.190 REMARK 200 RESOLUTION RANGE LOW (A) : 75.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 62.7 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.57300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2GDN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE BUFFER, PH 5.0, REMARK 280 25% PEG1500, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 28 REMARK 465 ASP A 29 REMARK 465 MET B 28 REMARK 465 LEU B 295 REMARK 465 GLU B 296 REMARK 465 HIS B 297 REMARK 465 HIS B 298 REMARK 465 HIS B 299 REMARK 465 HIS B 300 REMARK 465 HIS B 301 REMARK 465 HIS B 302 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 48 CZ TYR A 48 CE2 -0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 65 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 101 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 101 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 126 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 178 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 204 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 244 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 267 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 LEU A 282 CB - CG - CD2 ANGL. DEV. = 10.4 DEGREES REMARK 500 LEU B 37 CB - CG - CD2 ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG B 40 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 65 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG B 65 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG B 101 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 126 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG B 126 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ASP B 204 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 267 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG B 278 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 69 -143.98 46.71 REMARK 500 ARG A 222 -122.61 -116.63 REMARK 500 HIS A 297 51.60 -141.88 REMARK 500 CYS B 69 -147.79 47.84 REMARK 500 ARG B 222 -122.85 -119.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 AE4 B 405 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ETE B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AE4 B 405 DBREF1 5NJ2 A 29 294 UNP A0A0T9EA39_MYCTX DBREF2 5NJ2 A A0A0T9EA39 6 270 DBREF1 5NJ2 B 29 294 UNP A0A0T9EA39_MYCTX DBREF2 5NJ2 B A0A0T9EA39 6 270 SEQADV 5NJ2 MET A 28 UNP A0A0T9EA3 INITIATING METHIONINE SEQADV 5NJ2 LEU A 295 UNP A0A0T9EA3 EXPRESSION TAG SEQADV 5NJ2 GLU A 296 UNP A0A0T9EA3 EXPRESSION TAG SEQADV 5NJ2 HIS A 297 UNP A0A0T9EA3 EXPRESSION TAG SEQADV 5NJ2 HIS A 298 UNP A0A0T9EA3 EXPRESSION TAG SEQADV 5NJ2 HIS A 299 UNP A0A0T9EA3 EXPRESSION TAG SEQADV 5NJ2 HIS A 300 UNP A0A0T9EA3 EXPRESSION TAG SEQADV 5NJ2 HIS A 301 UNP A0A0T9EA3 EXPRESSION TAG SEQADV 5NJ2 HIS A 302 UNP A0A0T9EA3 EXPRESSION TAG SEQADV 5NJ2 MET B 28 UNP A0A0T9EA3 INITIATING METHIONINE SEQADV 5NJ2 LEU B 295 UNP A0A0T9EA3 EXPRESSION TAG SEQADV 5NJ2 GLU B 296 UNP A0A0T9EA3 EXPRESSION TAG SEQADV 5NJ2 HIS B 297 UNP A0A0T9EA3 EXPRESSION TAG SEQADV 5NJ2 HIS B 298 UNP A0A0T9EA3 EXPRESSION TAG SEQADV 5NJ2 HIS B 299 UNP A0A0T9EA3 EXPRESSION TAG SEQADV 5NJ2 HIS B 300 UNP A0A0T9EA3 EXPRESSION TAG SEQADV 5NJ2 HIS B 301 UNP A0A0T9EA3 EXPRESSION TAG SEQADV 5NJ2 HIS B 302 UNP A0A0T9EA3 EXPRESSION TAG SEQRES 1 A 274 MET ASP LEU ALA ASP ARG PHE ALA GLU LEU GLU ARG ARG SEQRES 2 A 274 TYR ASP ALA ARG LEU GLY VAL TYR VAL PRO ALA THR GLY SEQRES 3 A 274 THR THR ALA ALA ILE GLU TYR ARG ALA ASP GLU ARG PHE SEQRES 4 A 274 ALA PHE CYS SER THR PHE LYS ALA PRO LEU VAL ALA ALA SEQRES 5 A 274 VAL LEU HIS GLN ASN PRO LEU THR HIS LEU ASP LYS LEU SEQRES 6 A 274 ILE THR TYR THR SER ASP ASP ILE ARG SER ILE SER PRO SEQRES 7 A 274 VAL ALA GLN GLN HIS VAL GLN THR GLY MET THR ILE GLY SEQRES 8 A 274 GLN LEU CYS ASP ALA ALA ILE ARG TYR SER ASP GLY THR SEQRES 9 A 274 ALA ALA ASN LEU LEU LEU ALA ASP LEU GLY GLY PRO GLY SEQRES 10 A 274 GLY GLY THR ALA ALA PHE THR GLY TYR LEU ARG SER LEU SEQRES 11 A 274 GLY ASP THR VAL SER ARG LEU ASP ALA GLU GLU PRO GLU SEQRES 12 A 274 LEU ASN ARG ASP PRO PRO GLY ASP GLU ARG ASP THR THR SEQRES 13 A 274 THR PRO HIS ALA ILE ALA LEU VAL LEU GLN GLN LEU VAL SEQRES 14 A 274 LEU GLY ASN ALA LEU PRO PRO ASP LYS ARG ALA LEU LEU SEQRES 15 A 274 THR ASP TRP MET ALA ARG ASN THR THR GLY ALA LYS ARG SEQRES 16 A 274 ILE ARG ALA GLY PHE PRO ALA ASP TRP LYS VAL ILE ASP SEQRES 17 A 274 LYS THR GLY THR GLY ASP TYR GLY ARG ALA ASN ASP ILE SEQRES 18 A 274 ALA VAL VAL TRP SER PRO THR GLY VAL PRO TYR VAL VAL SEQRES 19 A 274 ALA VAL MET SER ASP ARG ALA GLY GLY GLY TYR ASP ALA SEQRES 20 A 274 GLU PRO ARG GLU ALA LEU LEU ALA GLU ALA ALA THR CYS SEQRES 21 A 274 VAL ALA GLY VAL LEU ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 22 A 274 HIS SEQRES 1 B 274 MET ASP LEU ALA ASP ARG PHE ALA GLU LEU GLU ARG ARG SEQRES 2 B 274 TYR ASP ALA ARG LEU GLY VAL TYR VAL PRO ALA THR GLY SEQRES 3 B 274 THR THR ALA ALA ILE GLU TYR ARG ALA ASP GLU ARG PHE SEQRES 4 B 274 ALA PHE CYS SER THR PHE LYS ALA PRO LEU VAL ALA ALA SEQRES 5 B 274 VAL LEU HIS GLN ASN PRO LEU THR HIS LEU ASP LYS LEU SEQRES 6 B 274 ILE THR TYR THR SER ASP ASP ILE ARG SER ILE SER PRO SEQRES 7 B 274 VAL ALA GLN GLN HIS VAL GLN THR GLY MET THR ILE GLY SEQRES 8 B 274 GLN LEU CYS ASP ALA ALA ILE ARG TYR SER ASP GLY THR SEQRES 9 B 274 ALA ALA ASN LEU LEU LEU ALA ASP LEU GLY GLY PRO GLY SEQRES 10 B 274 GLY GLY THR ALA ALA PHE THR GLY TYR LEU ARG SER LEU SEQRES 11 B 274 GLY ASP THR VAL SER ARG LEU ASP ALA GLU GLU PRO GLU SEQRES 12 B 274 LEU ASN ARG ASP PRO PRO GLY ASP GLU ARG ASP THR THR SEQRES 13 B 274 THR PRO HIS ALA ILE ALA LEU VAL LEU GLN GLN LEU VAL SEQRES 14 B 274 LEU GLY ASN ALA LEU PRO PRO ASP LYS ARG ALA LEU LEU SEQRES 15 B 274 THR ASP TRP MET ALA ARG ASN THR THR GLY ALA LYS ARG SEQRES 16 B 274 ILE ARG ALA GLY PHE PRO ALA ASP TRP LYS VAL ILE ASP SEQRES 17 B 274 LYS THR GLY THR GLY ASP TYR GLY ARG ALA ASN ASP ILE SEQRES 18 B 274 ALA VAL VAL TRP SER PRO THR GLY VAL PRO TYR VAL VAL SEQRES 19 B 274 ALA VAL MET SER ASP ARG ALA GLY GLY GLY TYR ASP ALA SEQRES 20 B 274 GLU PRO ARG GLU ALA LEU LEU ALA GLU ALA ALA THR CYS SEQRES 21 B 274 VAL ALA GLY VAL LEU ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 22 B 274 HIS HET PO4 A 401 5 HET ACT A 402 4 HET ACT A 403 4 HET ACT A 404 4 HET PO4 B 401 5 HET PO4 B 402 5 HET ACT B 403 4 HET ETE B 404 14 HET AE4 B 405 15 HETNAM PO4 PHOSPHATE ION HETNAM ACT ACETATE ION HETNAM ETE 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETNAM AE4 3,6,9,12,15-PENTAOXAHEPTADECAN-1-OL FORMUL 3 PO4 3(O4 P 3-) FORMUL 4 ACT 4(C2 H3 O2 1-) FORMUL 10 ETE C9 H20 O5 FORMUL 11 AE4 C12 H26 O6 FORMUL 12 HOH *288(H2 O) HELIX 1 AA1 LEU A 30 ASP A 42 1 13 HELIX 2 AA2 CYS A 69 THR A 71 5 3 HELIX 3 AA3 PHE A 72 ASN A 84 1 13 HELIX 4 AA4 PRO A 85 ASP A 90 5 6 HELIX 5 AA5 THR A 96 ILE A 100 5 5 HELIX 6 AA6 SER A 104 VAL A 111 1 8 HELIX 7 AA7 ILE A 117 TYR A 127 1 11 HELIX 8 AA8 ASP A 129 GLY A 142 1 14 HELIX 9 AA9 GLY A 145 LEU A 157 1 13 HELIX 10 AB1 PRO A 169 ARG A 173 5 5 HELIX 11 AB2 THR A 184 LEU A 197 1 14 HELIX 12 AB3 PRO A 202 ARG A 215 1 14 HELIX 13 AB4 ARG A 222 PHE A 227 1 6 HELIX 14 AB5 ARG A 268 GLY A 272 5 5 HELIX 15 AB6 ARG A 278 LEU A 295 1 18 HELIX 16 AB7 LEU B 30 ASP B 42 1 13 HELIX 17 AB8 CYS B 69 THR B 71 5 3 HELIX 18 AB9 PHE B 72 ASN B 84 1 13 HELIX 19 AC1 PRO B 85 ASP B 90 5 6 HELIX 20 AC2 THR B 96 ILE B 100 5 5 HELIX 21 AC3 VAL B 106 VAL B 111 5 6 HELIX 22 AC4 ILE B 117 TYR B 127 1 11 HELIX 23 AC5 ASP B 129 GLY B 142 1 14 HELIX 24 AC6 GLY B 145 LEU B 157 1 13 HELIX 25 AC7 PRO B 169 ARG B 173 5 5 HELIX 26 AC8 THR B 184 LEU B 197 1 14 HELIX 27 AC9 PRO B 202 ARG B 215 1 14 HELIX 28 AD1 ARG B 222 PHE B 227 1 6 HELIX 29 AD2 ARG B 268 GLY B 272 5 5 HELIX 30 AD3 ARG B 278 ALA B 294 1 17 SHEET 1 AA1 5 ILE A 58 TYR A 60 0 SHEET 2 AA1 5 ARG A 44 VAL A 49 -1 N VAL A 47 O TYR A 60 SHEET 3 AA1 5 PRO A 259 ASP A 267 -1 O MET A 265 N GLY A 46 SHEET 4 AA1 5 ARG A 244 TRP A 252 -1 N VAL A 251 O TYR A 260 SHEET 5 AA1 5 LYS A 232 GLY A 240 -1 N GLY A 238 O ASN A 246 SHEET 1 AA2 2 PHE A 66 ALA A 67 0 SHEET 2 AA2 2 THR A 182 THR A 183 -1 O THR A 183 N PHE A 66 SHEET 1 AA3 2 LEU A 92 ILE A 93 0 SHEET 2 AA3 2 MET A 115 THR A 116 -1 O MET A 115 N ILE A 93 SHEET 1 AA4 5 ILE B 58 TYR B 60 0 SHEET 2 AA4 5 ARG B 44 VAL B 49 -1 N VAL B 47 O TYR B 60 SHEET 3 AA4 5 PRO B 259 ASP B 267 -1 O MET B 265 N GLY B 46 SHEET 4 AA4 5 ARG B 244 TRP B 252 -1 N VAL B 251 O TYR B 260 SHEET 5 AA4 5 LYS B 232 GLY B 240 -1 N GLY B 238 O ASN B 246 SHEET 1 AA5 2 PHE B 66 ALA B 67 0 SHEET 2 AA5 2 THR B 182 THR B 183 -1 O THR B 183 N PHE B 66 SHEET 1 AA6 2 LEU B 92 ILE B 93 0 SHEET 2 AA6 2 MET B 115 THR B 116 -1 O MET B 115 N ILE B 93 CISPEP 1 GLU A 168 PRO A 169 0 2.21 CISPEP 2 GLU B 168 PRO B 169 0 1.12 SITE 1 AC1 7 SER A 70 SER A 128 LYS A 236 THR A 237 SITE 2 AC1 7 GLY A 238 THR A 239 HOH A 578 SITE 1 AC2 4 PRO A 202 ASP A 204 LYS A 205 HOH A 594 SITE 1 AC3 5 GLY A 118 GLN A 119 ASP A 122 TRP A 212 SITE 2 AC3 5 HOH A 634 SITE 1 AC4 3 ARG A 173 ASP A 241 TYR A 273 SITE 1 AC5 6 SER B 70 SER B 128 LYS B 236 THR B 237 SITE 2 AC5 6 GLY B 238 THR B 239 SITE 1 AC6 4 HIS A 300 ARG B 173 ASP B 241 TYR B 273 SITE 1 AC7 4 PRO B 202 ASP B 204 LYS B 205 HOH B 608 SITE 1 AC8 5 HOH A 612 THR B 210 ALA B 214 LYS B 232 SITE 2 AC8 5 TRP B 252 SITE 1 AC9 7 ALA B 31 ALA B 57 ILE B 58 GLU B 59 SITE 2 AC9 7 TYR B 60 ARG B 61 HOH B 509 CRYST1 39.591 41.683 76.841 101.28 90.11 90.43 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025258 0.000188 0.000088 0.00000 SCALE2 0.000000 0.023991 0.004787 0.00000 SCALE3 0.000000 0.000000 0.013270 0.00000