HEADER TRANSFERASE 28-MAR-17 5NJI TITLE STRUCTURE OF THE DEHYDRATASE DOMAIN OF PPSC FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS IN COMPLEX WITH C12:1-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHTHIOCEROL/PHENOLPHTHIOCEROL SYNTHESIS POLYKETIDE SYNTHASE COMPND 3 TYPE I PPSC; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: BETA-KETOACYL-ACYL-CARRIER-PROTEIN SYNTHASE I; COMPND 6 EC: 2.3.1.41; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 GENE: PPSC, RV2933; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DEHYDRATASE, POLYKETIDE, COMPLEX, TUBERCULOSIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.GAVALDA,A.FAILLE,L.MOUREY,J.D.PEDELACQ REVDAT 3 17-JAN-24 5NJI 1 REMARK REVDAT 2 07-JUN-17 5NJI 1 JRNL REVDAT 1 31-MAY-17 5NJI 0 SPRSDE 31-MAY-17 5NJI 5CF7 JRNL AUTH A.FAILLE,S.GAVALDA,N.SLAMA,C.LHERBET,L.MAVEYRAUD,V.GUILLET, JRNL AUTH 2 F.LAVAL,A.QUEMARD,L.MOUREY,J.D.PEDELACQ JRNL TITL INSIGHTS INTO SUBSTRATE MODIFICATION BY DEHYDRATASES FROM JRNL TITL 2 TYPE I POLYKETIDE SYNTHASES. JRNL REF J. MOL. BIOL. V. 429 1554 2017 JRNL REFN ESSN 1089-8638 JRNL PMID 28377293 JRNL DOI 10.1016/J.JMB.2017.03.026 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 44239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.710 REMARK 3 FREE R VALUE TEST SET COUNT : 3197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.3342 - 4.5474 0.99 3644 142 0.1576 0.1653 REMARK 3 2 4.5474 - 3.6104 0.98 3588 134 0.1245 0.1468 REMARK 3 3 3.6104 - 3.1543 0.99 3641 141 0.1515 0.1686 REMARK 3 4 3.1543 - 2.8661 0.99 3596 140 0.1635 0.1671 REMARK 3 5 2.8661 - 2.6607 0.99 3632 144 0.1639 0.2149 REMARK 3 6 2.6607 - 2.5039 0.99 3643 142 0.1548 0.1592 REMARK 3 7 2.5039 - 2.3785 0.99 3603 139 0.1535 0.2008 REMARK 3 8 2.3785 - 2.2750 0.99 3653 141 0.1546 0.1749 REMARK 3 9 2.2750 - 2.1874 0.94 3471 128 0.2056 0.2624 REMARK 3 10 2.1874 - 2.1119 0.99 3585 139 0.1616 0.1908 REMARK 3 11 2.1119 - 2.0459 0.99 3664 139 0.1637 0.1826 REMARK 3 12 2.0459 - 1.9874 0.99 3674 139 0.1712 0.2102 REMARK 3 13 1.9874 - 1.9351 0.99 3563 139 0.1834 0.1959 REMARK 3 14 1.9351 - 1.8879 0.92 3442 136 0.3805 0.3818 REMARK 3 15 1.8879 - 1.8450 0.99 3529 134 0.2058 0.2318 REMARK 3 16 1.8450 - 1.8057 0.99 3650 144 0.2035 0.1992 REMARK 3 17 1.8057 - 1.7696 0.99 3595 138 0.1993 0.2201 REMARK 3 18 1.7696 - 1.7362 0.99 3718 144 0.2102 0.2043 REMARK 3 19 1.7362 - 1.7052 0.99 3563 135 0.2134 0.2685 REMARK 3 20 1.7052 - 1.6763 0.99 3645 138 0.2271 0.2601 REMARK 3 21 1.6763 - 1.6493 0.99 3602 141 0.2490 0.2843 REMARK 3 22 1.6493 - 1.6239 0.99 3639 140 0.2710 0.2702 REMARK 3 23 1.6239 - 1.6000 0.99 3622 140 0.2790 0.2844 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.023 2181 REMARK 3 ANGLE : 2.070 2995 REMARK 3 CHIRALITY : 0.103 363 REMARK 3 PLANARITY : 0.010 377 REMARK 3 DIHEDRAL : 18.984 894 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 926 THROUGH 1017 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.6198 -3.7686 40.5268 REMARK 3 T TENSOR REMARK 3 T11: 0.1302 T22: 0.1035 REMARK 3 T33: 0.1444 T12: 0.0076 REMARK 3 T13: 0.0052 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 2.4886 L22: 0.8291 REMARK 3 L33: 0.9280 L12: 0.8656 REMARK 3 L13: 0.4740 L23: 0.5076 REMARK 3 S TENSOR REMARK 3 S11: 0.0070 S12: -0.0733 S13: 0.0109 REMARK 3 S21: -0.0008 S22: 0.0049 S23: -0.1058 REMARK 3 S31: 0.0458 S32: 0.0814 S33: -0.0246 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1018 THROUGH 1081 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7774 -2.1313 43.0296 REMARK 3 T TENSOR REMARK 3 T11: 0.0853 T22: 0.0346 REMARK 3 T33: 0.1828 T12: 0.0905 REMARK 3 T13: -0.0035 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 3.1660 L22: 2.1622 REMARK 3 L33: 3.2642 L12: 1.2351 REMARK 3 L13: -0.1713 L23: 0.2597 REMARK 3 S TENSOR REMARK 3 S11: 0.0525 S12: -0.1075 S13: 0.3116 REMARK 3 S21: 0.0786 S22: -0.0409 S23: 0.2316 REMARK 3 S31: 0.0085 S32: -0.0202 S33: -0.0816 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1082 THROUGH 1137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0760 -12.5968 42.1902 REMARK 3 T TENSOR REMARK 3 T11: 0.1576 T22: 0.0993 REMARK 3 T33: 0.1334 T12: -0.0312 REMARK 3 T13: 0.0072 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 4.7897 L22: 2.5743 REMARK 3 L33: 2.0877 L12: -0.5278 REMARK 3 L13: -0.0276 L23: 0.2861 REMARK 3 S TENSOR REMARK 3 S11: -0.0864 S12: -0.0932 S13: -0.0614 REMARK 3 S21: 0.0563 S22: 0.0229 S23: 0.1160 REMARK 3 S31: 0.1597 S32: -0.0403 S33: 0.0694 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1138 THROUGH 1217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8408 -2.6502 44.4583 REMARK 3 T TENSOR REMARK 3 T11: 0.1018 T22: 0.1105 REMARK 3 T33: 0.1670 T12: -0.0103 REMARK 3 T13: 0.0008 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 2.1907 L22: 2.8212 REMARK 3 L33: 3.2185 L12: -0.6952 REMARK 3 L13: 0.0533 L23: -1.2715 REMARK 3 S TENSOR REMARK 3 S11: 0.0896 S12: -0.0472 S13: 0.0903 REMARK 3 S21: -0.0818 S22: -0.0508 S23: 0.2502 REMARK 3 S31: 0.0565 S32: -0.1393 S33: -0.0291 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NJI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004230. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979220 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53493 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 41.145 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.11.1-2575 REMARK 200 STARTING MODEL: 5IOK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA/K PO4 1.8 M, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.68850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.40500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.68850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.40500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 900 REMARK 465 GLY A 901 REMARK 465 SER A 902 REMARK 465 SER A 903 REMARK 465 HIS A 904 REMARK 465 HIS A 905 REMARK 465 HIS A 906 REMARK 465 HIS A 907 REMARK 465 HIS A 908 REMARK 465 HIS A 909 REMARK 465 SER A 910 REMARK 465 SER A 911 REMARK 465 GLY A 912 REMARK 465 LEU A 913 REMARK 465 VAL A 914 REMARK 465 PRO A 915 REMARK 465 ARG A 916 REMARK 465 GLY A 917 REMARK 465 SER A 918 REMARK 465 HIS A 919 REMARK 465 MET A 920 REMARK 465 ALA A 921 REMARK 465 TYR A 922 REMARK 465 HIS A 923 REMARK 465 ARG A 924 REMARK 465 PRO A 925 REMARK 465 GLY A 1031 REMARK 465 SER A 1032 REMARK 465 SER A 1033 REMARK 465 ASP A 1053 REMARK 465 HIS A 1054 REMARK 465 GLU A 1055 REMARK 465 GLY A 1056 REMARK 465 GLN A 1057 REMARK 465 ARG A 1058 REMARK 465 ARG A 1059 REMARK 465 GLU A 1060 REMARK 465 VAL A 1061 REMARK 465 THR A 1062 REMARK 465 THR A 1063 REMARK 465 ALA A 1064 REMARK 465 GLY A 1147 REMARK 465 GLN A 1148 REMARK 465 ASP A 1149 REMARK 465 ALA A 1150 REMARK 465 ARG A 1151 REMARK 465 GLN A 1152 REMARK 465 GLY A 1153 REMARK 465 PRO A 1154 REMARK 465 SER A 1155 REMARK 465 SER A 1156 REMARK 465 ASN A 1157 REMARK 465 THR A 1218 REMARK 465 SER A 1219 REMARK 465 GLY A 1220 REMARK 465 SER A 1221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 987 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 1027 O HOH A 1607 1.51 REMARK 500 HH11 ARG A 1027 O HOH A 1605 1.53 REMARK 500 HH11 ARG A 1165 O HOH A 1606 1.60 REMARK 500 O HOH A 1708 O HOH A 1733 1.96 REMARK 500 O HOH A 1632 O HOH A 1826 2.08 REMARK 500 O HOH A 1791 O HOH A 1834 2.13 REMARK 500 O HOH A 1670 O HOH A 1846 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A1000 CZ ARG A1000 NH1 0.094 REMARK 500 ARG A1000 CZ ARG A1000 NH2 0.089 REMARK 500 ARG A1000 CZ ARG A1000 NH2 0.081 REMARK 500 ARG A1027 CZ ARG A1027 NH2 0.088 REMARK 500 ARG A1029 CZ ARG A1029 NH1 0.081 REMARK 500 ARG A1029 CZ ARG A1029 NH2 0.097 REMARK 500 SER A1030 N SER A1030 CA 0.150 REMARK 500 MET A1127 CA MET A1127 C 0.188 REMARK 500 MET A1127 CA MET A1127 C 0.184 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1119 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A1119 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 954 -129.91 47.01 REMARK 500 ASP A 963 -7.57 73.82 REMARK 500 GLU A 987 56.56 -91.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A1123 11.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8Z2 A 1301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OOC RELATED DB: PDB REMARK 900 WILD-TYPE DH DOMAIN FROM PPSC REMARK 900 RELATED ID: 5L84 RELATED DB: PDB REMARK 900 H959F VARIANT OF DH DOMAIN FROM PPSC REMARK 900 RELATED ID: 5I0K RELATED DB: PDB REMARK 900 H959F VARIANT OF DH DOMAIN FROM PPSC IN COMPLEX WITH C4:1-COA DBREF 5NJI A 921 1217 UNP Q7TXL8 PPSC_MYCBO 921 1217 SEQADV 5NJI MET A 900 UNP Q7TXL8 INITIATING METHIONINE SEQADV 5NJI GLY A 901 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI SER A 902 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI SER A 903 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI HIS A 904 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI HIS A 905 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI HIS A 906 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI HIS A 907 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI HIS A 908 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI HIS A 909 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI SER A 910 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI SER A 911 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI GLY A 912 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI LEU A 913 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI VAL A 914 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI PRO A 915 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI ARG A 916 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI GLY A 917 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI SER A 918 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI HIS A 919 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI MET A 920 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI PHE A 959 UNP Q7TXL8 HIS 959 ENGINEERED MUTATION SEQADV 5NJI THR A 1218 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI SER A 1219 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI GLY A 1220 UNP Q7TXL8 EXPRESSION TAG SEQADV 5NJI SER A 1221 UNP Q7TXL8 EXPRESSION TAG SEQRES 1 A 322 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 322 LEU VAL PRO ARG GLY SER HIS MET ALA TYR HIS ARG PRO SEQRES 3 A 322 ASP THR HIS PRO LEU LEU GLY VAL GLY VAL THR ASP PRO SEQRES 4 A 322 THR ASN GLY THR ARG VAL TRP GLU SER GLU LEU ASP PRO SEQRES 5 A 322 ASP LEU LEU TRP LEU ALA ASP PHE VAL ILE ASP ASP LEU SEQRES 6 A 322 VAL VAL LEU PRO GLY ALA ALA TYR ALA GLU ILE ALA LEU SEQRES 7 A 322 ALA ALA ALA THR ASP THR PHE ALA VAL GLU GLN ASP GLN SEQRES 8 A 322 PRO TRP MET ILE SER GLU LEU ASP LEU ARG GLN MET LEU SEQRES 9 A 322 HIS VAL THR PRO GLY THR VAL LEU VAL THR THR LEU THR SEQRES 10 A 322 GLY ASP GLU GLN ARG CYS GLN VAL GLU ILE ARG THR ARG SEQRES 11 A 322 SER GLY SER SER GLY TRP THR THR HIS ALA THR ALA THR SEQRES 12 A 322 VAL ALA ARG ALA GLU PRO LEU ALA PRO LEU ASP HIS GLU SEQRES 13 A 322 GLY GLN ARG ARG GLU VAL THR THR ALA ASP LEU GLU ASP SEQRES 14 A 322 GLN LEU ASP PRO ASP ASP LEU TYR GLN ARG LEU ARG GLY SEQRES 15 A 322 ALA GLY GLN GLN HIS GLY PRO ALA PHE GLN GLY ILE VAL SEQRES 16 A 322 GLY LEU ALA VAL THR GLN ALA GLY VAL ALA ARG ALA GLN SEQRES 17 A 322 VAL ARG LEU PRO ALA SER ALA ARG THR GLY SER ARG GLU SEQRES 18 A 322 PHE MET LEU HIS PRO VAL MET MET ASP ILE ALA LEU GLN SEQRES 19 A 322 THR LEU GLY ALA THR ARG THR ALA THR ASP LEU ALA GLY SEQRES 20 A 322 GLY GLN ASP ALA ARG GLN GLY PRO SER SER ASN SER ALA SEQRES 21 A 322 LEU VAL VAL PRO VAL ARG PHE ALA GLY VAL HIS VAL TYR SEQRES 22 A 322 GLY ASP ILE THR ARG GLY VAL ARG ALA VAL GLY SER LEU SEQRES 23 A 322 ALA ALA ALA GLY ASP ARG LEU VAL GLY GLU VAL VAL LEU SEQRES 24 A 322 THR ASP ALA ASN GLY GLN PRO LEU LEU VAL VAL ASP GLU SEQRES 25 A 322 VAL GLU MET ALA VAL LEU THR SER GLY SER HET 8Z2 A1301 226 HETNAM 8Z2 ~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5- HETNAM 2 8Z2 (6-AMINOPURIN-9-YL)-4-OXIDANYL-3-PHOSPHONOOXY-OXOLAN- HETNAM 3 8Z2 2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-OXIDANYL- HETNAM 4 8Z2 PHOSPHORYL]OXY-3,3-DIMETHYL-2-OXIDANYL- HETNAM 5 8Z2 BUTANOYL]AMINO]PROPANOYLAMINO]ETHYL] (~{E})-DODEC-2- HETNAM 6 8Z2 ENETHIOATE FORMUL 2 8Z2 C33 H56 N7 O17 P3 S FORMUL 3 HOH *292(H2 O) HELIX 1 AA1 TRP A 955 ALA A 957 5 3 HELIX 2 AA2 PRO A 968 PHE A 984 1 17 HELIX 3 AA3 ASP A 1071 ALA A 1082 1 12 HELIX 4 AA4 PRO A 1088 GLN A 1091 5 4 HELIX 5 AA5 PRO A 1111 ARG A 1115 5 5 HELIX 6 AA6 HIS A 1124 THR A 1134 1 11 HELIX 7 AA7 LEU A 1135 ALA A 1137 5 3 HELIX 8 AA8 THR A 1138 GLY A 1146 1 9 HELIX 9 AA9 ASP A 1174 GLY A 1178 5 5 SHEET 1 AA113 VAL A 933 THR A 936 0 SHEET 2 AA113 ARG A 943 LEU A 949 -1 O VAL A 944 N VAL A 935 SHEET 3 AA113 THR A1009 GLY A1017 -1 O THR A1009 N LEU A 949 SHEET 4 AA113 ARG A1021 THR A1028 -1 O ARG A1027 N VAL A1012 SHEET 5 AA113 THR A1036 ARG A1045 -1 O HIS A1038 N ILE A1026 SHEET 6 AA113 TRP A 992 LEU A 999 -1 N ASP A 998 O THR A1040 SHEET 7 AA113 VAL A1161 VAL A1171 -1 O PHE A1166 N LEU A 997 SHEET 8 AA113 PRO A1205 VAL A1216 -1 O VAL A1208 N HIS A1170 SHEET 9 AA113 ARG A1191 THR A1199 -1 N LEU A1198 O LEU A1206 SHEET 10 AA113 ARG A1180 ALA A1188 -1 N ALA A1186 O VAL A1193 SHEET 11 AA113 ALA A1104 VAL A1108 -1 N ALA A1106 O ALA A1181 SHEET 12 AA113 ILE A1093 THR A1099 -1 N ALA A1097 O ARG A1105 SHEET 13 AA113 GLU A1067 LEU A1070 -1 N LEU A1070 O LEU A1096 SHEET 1 AA2 3 LEU A 964 VAL A 965 0 SHEET 2 AA2 3 PHE A 959 ILE A 961 -1 N ILE A 961 O LEU A 964 SHEET 3 AA2 3 GLN A1084 HIS A1086 -1 O GLN A1085 N VAL A 960 SITE 1 AC1 25 PHE A 959 ILE A 961 LEU A 967 GLY A 969 SITE 2 AC1 25 LEU A 999 ARG A1000 MET A1002 LEU A1052 SITE 3 AC1 25 GLN A1084 VAL A1094 GLN A1107 VAL A1108 SITE 4 AC1 25 ARG A1109 ASP A1129 GLY A1136 VAL A1161 SITE 5 AC1 25 PRO A1163 VAL A1164 VAL A1179 ARG A1191 SITE 6 AC1 25 ALA A1201 HOH A1620 HOH A1633 HOH A1710 SITE 7 AC1 25 HOH A1731 CRYST1 117.377 70.810 42.571 90.00 104.87 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008520 0.000000 0.002263 0.00000 SCALE2 0.000000 0.014122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024304 0.00000