data_5NKO # _entry.id 5NKO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5NKO pdb_00005nko 10.2210/pdb5nko/pdb WWPDB D_1200003945 ? ? BMRB 34120 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution structure of the C-terminal domain of S. aureus Hibernating Promoting Factor (CTD-SaHPF)' _pdbx_database_related.db_id 34120 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5NKO _pdbx_database_status.recvd_initial_deposition_date 2017-03-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Usachev, K.S.' 1 0000-0002-6331-7764 'Khusainov, I.S.' 2 ? 'Ayupov, R.K.' 3 ? 'Validov, S.Z.' 4 ? 'Kieffer, B.' 5 ? 'Yusupov, M.M.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'EMBO J.' _citation.journal_id_ASTM EMJODG _citation.journal_id_CSD 0897 _citation.journal_id_ISSN 1460-2075 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 36 _citation.language ? _citation.page_first 2073 _citation.page_last 2087 _citation.title 'Structures and dynamics of hibernating ribosomes from Staphylococcus aureus mediated by intermolecular interactions of HPF.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.15252/embj.201696105 _citation.pdbx_database_id_PubMed 28645916 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Khusainov, I.' 1 ? primary 'Vicens, Q.' 2 ? primary 'Ayupov, R.' 3 ? primary 'Usachev, K.' 4 ? primary 'Myasnikov, A.' 5 ? primary 'Simonetti, A.' 6 ? primary 'Validov, S.' 7 ? primary 'Kieffer, B.' 8 ? primary 'Yusupova, G.' 9 ? primary 'Yusupov, M.' 10 ? primary 'Hashem, Y.' 11 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Ribosome hibernation promotion factor' _entity.formula_weight 7124.070 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'C-terminal domain, UNP residues 131-190' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'HPF,Hibernation promoting factor SaHPF' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ _entity_poly.pdbx_seq_one_letter_code_can MIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 GLU n 1 4 ILE n 1 5 ILE n 1 6 ARG n 1 7 SER n 1 8 LYS n 1 9 GLU n 1 10 PHE n 1 11 SER n 1 12 LEU n 1 13 LYS n 1 14 PRO n 1 15 MET n 1 16 ASP n 1 17 SER n 1 18 GLU n 1 19 GLU n 1 20 ALA n 1 21 VAL n 1 22 LEU n 1 23 GLN n 1 24 MET n 1 25 ASN n 1 26 LEU n 1 27 LEU n 1 28 GLY n 1 29 HIS n 1 30 ASP n 1 31 PHE n 1 32 PHE n 1 33 VAL n 1 34 PHE n 1 35 THR n 1 36 ASP n 1 37 ARG n 1 38 GLU n 1 39 THR n 1 40 ASP n 1 41 GLY n 1 42 THR n 1 43 SER n 1 44 ILE n 1 45 VAL n 1 46 TYR n 1 47 ARG n 1 48 ARG n 1 49 LYS n 1 50 ASP n 1 51 GLY n 1 52 LYS n 1 53 TYR n 1 54 GLY n 1 55 LEU n 1 56 ILE n 1 57 GLN n 1 58 THR n 1 59 SER n 1 60 GLU n 1 61 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 61 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'hpf, SAOUHSC_00767' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'NCTC 8325' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus (strain NCTC 8325)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 93061 _entity_src_gen.pdbx_gene_src_variant SaHPF _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant star _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGS21A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HPF_STAA8 _struct_ref.pdbx_db_accession Q2G055 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code IEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ _struct_ref.pdbx_align_begin 131 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5NKO A 2 ? 61 ? Q2G055 131 ? 190 ? 131 190 2 1 5NKO B 2 ? 61 ? Q2G055 131 ? 190 ? 131 190 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5NKO MET A 1 ? UNP Q2G055 ? ? 'initiating methionine' 130 1 2 5NKO MET B 1 ? UNP Q2G055 ? ? 'initiating methionine' 130 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '3D 1H-13C NOESY aliphatic' 1 isotropic 2 1 1 '3D 1H-13C NOESY aromatic' 1 isotropic 3 1 1 '3D 1H-15N NOESY' 1 isotropic 4 1 1 '2D 1H-1H NOESY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 308 _pdbx_nmr_exptl_sample_conditions.pressure_units bar _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.6 _pdbx_nmr_exptl_sample_conditions.ionic_strength 250 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2.0 mM [U-99% 13C; U-99% 15N] C-terminal domain of SaHPF, 50 mM potassium phosphate, 250 mM NH4Cl, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label '15N, 13C' _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 5NKO _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 5NKO _pdbx_nmr_ensemble.conformers_calculated_total_number 500 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5NKO _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' ARIA ? ;Linge, O'Donoghue and Nilges ; 4 'peak picking' ARIA ? ;Linge, O'Donoghue and Nilges ; 5 processing TopSpin ? 'Bruker Biospin' 2 'structure calculation' CNS ? 'Brunger, Adams, Clore, Gros, Nilges and Read' 6 'data analysis' 'PROCHECK / PROCHECK-NMR' ? 'Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton' 3 refinement CNS ? 'Brunger, Adams, Clore, Gros, Nilges and Read' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5NKO _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5NKO _struct.title 'Solution structure of the C-terminal domain of S. aureus Hibernating Promoting Factor (CTD-SaHPF)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5NKO _struct_keywords.text 'Staphylococcus aureus, Hibernation, Pathogen, Ribosome, Hibernating Promoting Factor, HPF, ribosomal protein' _struct_keywords.pdbx_keywords 'RIBOSOMAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 16 ? GLY A 28 ? ASP A 145 GLY A 157 1 ? 13 HELX_P HELX_P2 AA2 ASP B 16 ? GLY B 28 ? ASP B 145 GLY B 157 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 4 ? SER A 7 ? ILE A 133 SER A 136 AA1 2 LYS B 52 ? THR B 58 ? LYS B 181 THR B 187 AA1 3 THR B 42 ? ARG B 48 ? THR B 171 ARG B 177 AA1 4 PHE B 31 ? THR B 35 ? PHE B 160 THR B 164 AA2 1 PHE A 31 ? THR A 35 ? PHE A 160 THR A 164 AA2 2 THR A 42 ? ARG A 48 ? THR A 171 ARG A 177 AA2 3 LYS A 52 ? THR A 58 ? LYS A 181 THR A 187 AA2 4 ILE B 4 ? SER B 7 ? ILE B 133 SER B 136 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 5 ? N ILE A 134 O TYR B 53 ? O TYR B 182 AA1 2 3 O THR B 58 ? O THR B 187 N THR B 42 ? N THR B 171 AA1 3 4 O VAL B 45 ? O VAL B 174 N PHE B 32 ? N PHE B 161 AA2 1 2 N PHE A 32 ? N PHE A 161 O VAL A 45 ? O VAL A 174 AA2 2 3 N THR A 42 ? N THR A 171 O THR A 58 ? O THR A 187 AA2 3 4 N TYR A 53 ? N TYR A 182 O ILE B 5 ? O ILE B 134 # _atom_sites.entry_id 5NKO _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 130 130 MET MET A . n A 1 2 ILE 2 131 131 ILE ILE A . n A 1 3 GLU 3 132 132 GLU GLU A . n A 1 4 ILE 4 133 133 ILE ILE A . n A 1 5 ILE 5 134 134 ILE ILE A . n A 1 6 ARG 6 135 135 ARG ARG A . n A 1 7 SER 7 136 136 SER SER A . n A 1 8 LYS 8 137 137 LYS LYS A . n A 1 9 GLU 9 138 138 GLU GLU A . n A 1 10 PHE 10 139 139 PHE PHE A . n A 1 11 SER 11 140 140 SER SER A . n A 1 12 LEU 12 141 141 LEU LEU A . n A 1 13 LYS 13 142 142 LYS LYS A . n A 1 14 PRO 14 143 143 PRO PRO A . n A 1 15 MET 15 144 144 MET MET A . n A 1 16 ASP 16 145 145 ASP ASP A . n A 1 17 SER 17 146 146 SER SER A . n A 1 18 GLU 18 147 147 GLU GLU A . n A 1 19 GLU 19 148 148 GLU GLU A . n A 1 20 ALA 20 149 149 ALA ALA A . n A 1 21 VAL 21 150 150 VAL VAL A . n A 1 22 LEU 22 151 151 LEU LEU A . n A 1 23 GLN 23 152 152 GLN GLN A . n A 1 24 MET 24 153 153 MET MET A . n A 1 25 ASN 25 154 154 ASN ASN A . n A 1 26 LEU 26 155 155 LEU LEU A . n A 1 27 LEU 27 156 156 LEU LEU A . n A 1 28 GLY 28 157 157 GLY GLY A . n A 1 29 HIS 29 158 158 HIS HIS A . n A 1 30 ASP 30 159 159 ASP ASP A . n A 1 31 PHE 31 160 160 PHE PHE A . n A 1 32 PHE 32 161 161 PHE PHE A . n A 1 33 VAL 33 162 162 VAL VAL A . n A 1 34 PHE 34 163 163 PHE PHE A . n A 1 35 THR 35 164 164 THR THR A . n A 1 36 ASP 36 165 165 ASP ASP A . n A 1 37 ARG 37 166 166 ARG ARG A . n A 1 38 GLU 38 167 167 GLU GLU A . n A 1 39 THR 39 168 168 THR THR A . n A 1 40 ASP 40 169 169 ASP ASP A . n A 1 41 GLY 41 170 170 GLY GLY A . n A 1 42 THR 42 171 171 THR THR A . n A 1 43 SER 43 172 172 SER SER A . n A 1 44 ILE 44 173 173 ILE ILE A . n A 1 45 VAL 45 174 174 VAL VAL A . n A 1 46 TYR 46 175 175 TYR TYR A . n A 1 47 ARG 47 176 176 ARG ARG A . n A 1 48 ARG 48 177 177 ARG ARG A . n A 1 49 LYS 49 178 178 LYS LYS A . n A 1 50 ASP 50 179 179 ASP ASP A . n A 1 51 GLY 51 180 180 GLY GLY A . n A 1 52 LYS 52 181 181 LYS LYS A . n A 1 53 TYR 53 182 182 TYR TYR A . n A 1 54 GLY 54 183 183 GLY GLY A . n A 1 55 LEU 55 184 184 LEU LEU A . n A 1 56 ILE 56 185 185 ILE ILE A . n A 1 57 GLN 57 186 186 GLN GLN A . n A 1 58 THR 58 187 187 THR THR A . n A 1 59 SER 59 188 188 SER SER A . n A 1 60 GLU 60 189 189 GLU GLU A . n A 1 61 GLN 61 190 190 GLN GLN A . n B 1 1 MET 1 130 130 MET MET B . n B 1 2 ILE 2 131 131 ILE ILE B . n B 1 3 GLU 3 132 132 GLU GLU B . n B 1 4 ILE 4 133 133 ILE ILE B . n B 1 5 ILE 5 134 134 ILE ILE B . n B 1 6 ARG 6 135 135 ARG ARG B . n B 1 7 SER 7 136 136 SER SER B . n B 1 8 LYS 8 137 137 LYS LYS B . n B 1 9 GLU 9 138 138 GLU GLU B . n B 1 10 PHE 10 139 139 PHE PHE B . n B 1 11 SER 11 140 140 SER SER B . n B 1 12 LEU 12 141 141 LEU LEU B . n B 1 13 LYS 13 142 142 LYS LYS B . n B 1 14 PRO 14 143 143 PRO PRO B . n B 1 15 MET 15 144 144 MET MET B . n B 1 16 ASP 16 145 145 ASP ASP B . n B 1 17 SER 17 146 146 SER SER B . n B 1 18 GLU 18 147 147 GLU GLU B . n B 1 19 GLU 19 148 148 GLU GLU B . n B 1 20 ALA 20 149 149 ALA ALA B . n B 1 21 VAL 21 150 150 VAL VAL B . n B 1 22 LEU 22 151 151 LEU LEU B . n B 1 23 GLN 23 152 152 GLN GLN B . n B 1 24 MET 24 153 153 MET MET B . n B 1 25 ASN 25 154 154 ASN ASN B . n B 1 26 LEU 26 155 155 LEU LEU B . n B 1 27 LEU 27 156 156 LEU LEU B . n B 1 28 GLY 28 157 157 GLY GLY B . n B 1 29 HIS 29 158 158 HIS HIS B . n B 1 30 ASP 30 159 159 ASP ASP B . n B 1 31 PHE 31 160 160 PHE PHE B . n B 1 32 PHE 32 161 161 PHE PHE B . n B 1 33 VAL 33 162 162 VAL VAL B . n B 1 34 PHE 34 163 163 PHE PHE B . n B 1 35 THR 35 164 164 THR THR B . n B 1 36 ASP 36 165 165 ASP ASP B . n B 1 37 ARG 37 166 166 ARG ARG B . n B 1 38 GLU 38 167 167 GLU GLU B . n B 1 39 THR 39 168 168 THR THR B . n B 1 40 ASP 40 169 169 ASP ASP B . n B 1 41 GLY 41 170 170 GLY GLY B . n B 1 42 THR 42 171 171 THR THR B . n B 1 43 SER 43 172 172 SER SER B . n B 1 44 ILE 44 173 173 ILE ILE B . n B 1 45 VAL 45 174 174 VAL VAL B . n B 1 46 TYR 46 175 175 TYR TYR B . n B 1 47 ARG 47 176 176 ARG ARG B . n B 1 48 ARG 48 177 177 ARG ARG B . n B 1 49 LYS 49 178 178 LYS LYS B . n B 1 50 ASP 50 179 179 ASP ASP B . n B 1 51 GLY 51 180 180 GLY GLY B . n B 1 52 LYS 52 181 181 LYS LYS B . n B 1 53 TYR 53 182 182 TYR TYR B . n B 1 54 GLY 54 183 183 GLY GLY B . n B 1 55 LEU 55 184 184 LEU LEU B . n B 1 56 ILE 56 185 185 ILE ILE B . n B 1 57 GLN 57 186 186 GLN GLN B . n B 1 58 THR 58 187 187 THR THR B . n B 1 59 SER 59 188 188 SER SER B . n B 1 60 GLU 60 189 189 GLU GLU B . n B 1 61 GLN 61 190 190 GLN GLN B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3370 ? 1 MORE -14 ? 1 'SSA (A^2)' 6770 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-07-05 2 'Structure model' 1 1 2017-07-26 3 'Structure model' 1 2 2019-05-08 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_nmr_software 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_id_ASTM' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_volume' 5 2 'Structure model' '_citation.page_first' 6 2 'Structure model' '_citation.page_last' 7 3 'Structure model' '_pdbx_nmr_software.name' 8 4 'Structure model' '_database_2.pdbx_DOI' 9 4 'Structure model' '_database_2.pdbx_database_accession' 10 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' 11 4 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'C-terminal domain of SaHPF' 2.0 ? mM '[U-99% 13C; U-99% 15N]' 1 'potassium phosphate' 50 ? mM 'natural abundance' 1 NH4Cl 250 ? mM 'natural abundance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 4 H A ILE 173 ? ? HG13 A ILE 185 ? ? 1.32 2 7 OD2 B ASP 159 ? ? HZ2 B LYS 178 ? ? 1.58 3 7 OD2 A ASP 159 ? ? HZ2 A LYS 178 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 178 ? ? -65.64 5.57 2 1 LYS A 181 ? ? -110.97 -168.93 3 1 GLU A 189 ? ? 66.72 179.86 4 1 LYS B 178 ? ? -65.88 5.44 5 1 LYS B 181 ? ? -111.07 -168.78 6 1 GLU B 189 ? ? 66.41 179.74 7 2 ASP A 169 ? ? 63.94 64.70 8 2 GLU A 189 ? ? 72.31 -61.55 9 2 ASP B 169 ? ? 63.39 65.19 10 2 GLU B 189 ? ? 72.06 -61.65 11 3 SER A 172 ? ? -160.15 119.93 12 3 LYS A 178 ? ? -63.90 4.14 13 3 LYS A 181 ? ? -112.44 -167.60 14 3 LYS B 178 ? ? -64.05 3.95 15 3 LYS B 181 ? ? -112.74 -167.40 16 4 LYS A 142 ? ? -49.76 109.71 17 4 ASP A 169 ? ? 68.24 64.52 18 4 LYS A 178 ? ? -61.55 4.06 19 4 LYS B 142 ? ? -49.77 109.78 20 4 ASP B 169 ? ? 68.58 63.90 21 4 LYS B 178 ? ? -61.59 4.28 22 6 ASP A 169 ? ? 75.42 64.55 23 6 LYS A 178 ? ? -64.21 4.41 24 6 ASP B 169 ? ? 75.45 64.67 25 6 LYS B 178 ? ? -64.27 4.55 26 7 ASP A 169 ? ? 66.65 64.69 27 7 LYS A 181 ? ? -110.85 -168.93 28 7 SER A 188 ? ? -131.27 -54.44 29 7 ASP B 169 ? ? 66.50 64.62 30 7 LYS B 181 ? ? -110.62 -168.86 31 7 SER B 188 ? ? -131.25 -54.63 32 8 LYS A 142 ? ? -50.39 109.42 33 8 LYS A 178 ? ? -62.01 4.29 34 8 LYS A 181 ? ? -101.11 -169.55 35 8 LYS B 142 ? ? -50.47 109.43 36 8 LYS B 178 ? ? -61.99 4.57 37 8 LYS B 181 ? ? -101.09 -169.53 38 9 GLU A 167 ? ? -97.67 -60.57 39 9 LYS A 178 ? ? -69.75 4.20 40 9 LYS A 181 ? ? -110.89 -169.09 41 9 GLU B 167 ? ? -97.58 -60.46 42 9 LYS B 178 ? ? -69.64 4.90 43 9 LYS B 181 ? ? -110.67 -169.12 44 10 LYS A 178 ? ? -61.30 4.24 45 10 LYS B 178 ? ? -61.34 4.58 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 2 PHE A 139 ? ? SER A 140 ? ? -120.96 2 2 LEU A 141 ? ? LYS A 142 ? ? -148.33 3 2 LYS A 142 ? ? PRO A 143 ? ? -137.01 4 2 PHE B 139 ? ? SER B 140 ? ? -120.98 5 2 LEU B 141 ? ? LYS B 142 ? ? -148.44 6 2 LYS B 142 ? ? PRO B 143 ? ? -136.76 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 166 ? ? 0.092 'SIDE CHAIN' 2 1 ARG B 166 ? ? 0.093 'SIDE CHAIN' # _pdbx_audit_support.funding_organization 'Russian Science Foundation' _pdbx_audit_support.country 'Russian Federation' _pdbx_audit_support.grant_number 16-14-10014 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #