HEADER OXIDOREDUCTASE 03-APR-17 5NKU TITLE JOINT NEUTRON/X-RAY STRUCTURE OF DIMERIC CHLORITE DISMUTASE FROM TITLE 2 CYANOTHECE SP. PCC7425 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHLORITE DISMUTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYANOTHECE SP. (STRAIN PCC 7425 / ATCC 29141); SOURCE 3 ORGANISM_TAXID: 395961; SOURCE 4 STRAIN: PCC 7425 / ATCC 29141; SOURCE 5 GENE: CYAN7425_1434; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-52B+ KEYWDS CHLORITE DISMUTASE, CYANOBACTERIA, HEME, FERREDOXIN-LIKE FOLD, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION; NEUTRON DIFFRACTION AUTHOR D.PUEHRINGER,I.SCHAFFNER,G.MLYNEK,C.OBINGER,K.DJINOVIC-CARUGO REVDAT 3 01-MAY-24 5NKU 1 REMARK LINK REVDAT 2 14-NOV-18 5NKU 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 FORMUL LINK SITE ATOM REVDAT 1 28-FEB-18 5NKU 0 JRNL AUTH I.SCHAFFNER,G.MLYNEK,N.FLEGO,D.PUHRINGER,J.LIBISELLER-EGGER, JRNL AUTH 2 L.COATES,S.HOFBAUER,M.BELLEI,P.G.FURTMULLER,G.BATTISTUZZI, JRNL AUTH 3 G.SMULEVICH,K.DJINOVIC-CARUGO,C.OBINGER JRNL TITL MOLECULAR MECHANISM OF ENZYMATIC CHLORITE DETOXIFICATION: JRNL TITL 2 INSIGHTS FROM STRUCTURAL AND KINETIC STUDIES. JRNL REF ACS CATAL V. 7 7962 2017 JRNL REFN ESSN 2155-5435 JRNL PMID 29142780 JRNL DOI 10.1021/ACSCATAL.7B01749 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2689: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 X-RAY DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.7 REMARK 3 NUMBER OF REFLECTIONS : 27983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.670 REMARK 3 FREE R VALUE TEST SET COUNT : 1307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.4895 - 4.1483 0.97 3572 184 0.1195 0.1511 REMARK 3 2 4.1483 - 3.2978 0.95 3503 175 0.1241 0.1776 REMARK 3 3 3.2978 - 2.8824 0.95 3485 149 0.1641 0.1965 REMARK 3 4 2.8824 - 2.6196 0.94 3466 169 0.1636 0.2165 REMARK 3 5 2.6196 - 2.4322 0.94 3470 156 0.1619 0.2090 REMARK 3 6 2.4322 - 2.2890 0.83 3009 163 0.1583 0.2259 REMARK 3 7 2.2890 - 2.1746 0.69 2514 146 0.1474 0.2027 REMARK 3 8 2.1746 - 2.0800 0.57 2086 90 0.1499 0.2398 REMARK 3 9 2.0800 - 2.0000 0.43 1571 75 0.1438 0.1952 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 7017 REMARK 3 ANGLE : 1.630 12348 REMARK 3 CHIRALITY : 0.090 432 REMARK 3 PLANARITY : 0.008 1311 REMARK 3 DIHEDRAL : 15.987 2580 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1 THROUGH 182) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6309 -1.2516 -0.4265 REMARK 3 T TENSOR REMARK 3 T11: 0.3319 T22: 0.3555 REMARK 3 T33: 0.3711 T12: 0.0422 REMARK 3 T13: 0.0413 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 3.3646 L22: 1.4790 REMARK 3 L33: 7.8298 L12: 0.7421 REMARK 3 L13: 3.5985 L23: 0.9633 REMARK 3 S TENSOR REMARK 3 S11: 0.0426 S12: 0.7602 S13: -0.1686 REMARK 3 S21: -0.2421 S22: 0.0606 S23: 0.0373 REMARK 3 S31: 0.3943 S32: 0.8382 S33: 0.1098 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 1 THROUGH 182) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5318 8.3308 29.7424 REMARK 3 T TENSOR REMARK 3 T11: 0.3437 T22: 0.3300 REMARK 3 T33: 0.3650 T12: 0.0223 REMARK 3 T13: 0.0160 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 2.6732 L22: 1.3885 REMARK 3 L33: 7.4707 L12: 0.2314 REMARK 3 L13: 2.4904 L23: 0.9691 REMARK 3 S TENSOR REMARK 3 S11: -0.1327 S12: -0.5729 S13: 0.2358 REMARK 3 S21: 0.2159 S22: -0.2237 S23: 0.0944 REMARK 3 S31: -0.3813 S32: -0.7893 S33: -0.2568 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 3 NEUTRON DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 66.9 REMARK 3 NUMBER OF REFLECTIONS : 14292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.630 REMARK 3 FREE R VALUE TEST SET COUNT : 662 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 17.2234 - 4.0048 0.80 3246 168 0.1788 0.2080 REMARK 3 2 4.0048 - 3.1853 0.75 3053 156 0.2195 0.2437 REMARK 3 3 3.1853 - 2.7846 0.67 2737 121 0.2875 0.2789 REMARK 3 4 2.7846 - 2.5309 0.60 2469 115 0.3482 0.3319 REMARK 3 5 2.5309 - 2.3499 0.52 2125 102 0.3837 0.3880 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 7017 REMARK 3 ANGLE : 1.630 12348 REMARK 3 CHIRALITY : 0.090 432 REMARK 3 PLANARITY : 0.008 1311 REMARK 3 DIHEDRAL : 15.987 2580 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1 THROUGH 182) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6309 -1.2516 -0.4265 REMARK 3 T TENSOR REMARK 3 T11: 0.3319 T22: 0.3555 REMARK 3 T33: 0.3711 T12: 0.0422 REMARK 3 T13: 0.0413 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 3.3646 L22: 1.4790 REMARK 3 L33: 7.8298 L12: 0.7421 REMARK 3 L13: 3.5985 L23: 0.9633 REMARK 3 S TENSOR REMARK 3 S11: 0.0426 S12: 0.7602 S13: -0.1686 REMARK 3 S21: -0.2421 S22: 0.0606 S23: 0.0373 REMARK 3 S31: 0.3943 S32: 0.8382 S33: 0.1098 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 1 THROUGH 182) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5318 8.3308 29.7424 REMARK 3 T TENSOR REMARK 3 T11: 0.3437 T22: 0.3300 REMARK 3 T33: 0.3650 T12: 0.0223 REMARK 3 T13: 0.0160 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 2.6732 L22: 1.3885 REMARK 3 L33: 7.4707 L12: 0.2314 REMARK 3 L13: 2.4904 L23: 0.9691 REMARK 3 S TENSOR REMARK 3 S11: -0.1327 S12: -0.5729 S13: 0.2358 REMARK 3 S21: 0.2159 S22: -0.2237 S23: 0.0944 REMARK 3 S31: -0.3813 S32: -0.7893 S33: -0.2568 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NKU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3QPI REMARK 200 REMARK 200 REMARK: NULL REMARK 230 REMARK 230 EXPERIMENTAL DETAILS REMARK 230 EXPERIMENT TYPE : NEUTRON DIFFRACTION REMARK 230 DATE OF DATA COLLECTION : 30-NOV-15 REMARK 230 TEMPERATURE (KELVIN) : 293.0 REMARK 230 PH : 6.50 REMARK 230 NUMBER OF CRYSTALS USED : 1 REMARK 230 REMARK 230 NEUTRON SOURCE : NUCLEAR REACTOR REMARK 230 BEAMLINE : MANDI REMARK 230 WAVELENGTH OR RANGE (A) : 2.00 - 4.00 REMARK 230 MONOCHROMATOR : NULL REMARK 230 OPTICS : NULL REMARK 230 REMARK 230 DETECTOR TYPE : CCD REMARK 230 DETECTOR MANUFACTURER : ORNL ANGER CAMERA REMARK 230 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 230 DATA SCALING SOFTWARE : XSCALE REMARK 230 REMARK 230 NUMBER OF UNIQUE REFLECTIONS : 14292 REMARK 230 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 230 RESOLUTION RANGE LOW (A) : 17.223 REMARK 230 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 230 REMARK 230 OVERALL. REMARK 230 COMPLETENESS FOR RANGE (%) : 66.7 REMARK 230 DATA REDUNDANCY : 2.600 REMARK 230 R MERGE (I) : NULL REMARK 230 R SYM (I) : NULL REMARK 230 FOR THE DATA SET : 7.7000 REMARK 230 REMARK 230 IN THE HIGHEST RESOLUTION SHELL. REMARK 230 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 230 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 230 COMPLETENESS FOR SHELL (%) : NULL REMARK 230 DATA REDUNDANCY IN SHELL : NULL REMARK 230 R MERGE FOR SHELL (I) : NULL REMARK 230 R SYM FOR SHELL (I) : NULL REMARK 230 FOR SHELL : NULL REMARK 230 REMARK 230 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 230 SOFTWARE USED : NULL REMARK 230 STARTING MODEL: 3QPI REMARK 230 REMARK 230 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M MGSO4, 0.1 M MES PH 6.5, 30% REMARK 280 PEG 3350 GROWN IN CAPILLARY COUNTER-DIFFUSION SET UP AND BUFFER REMARK 280 EXCHANGED FOR 0.15 M MGSO4, 0.1 M TRIS HCL PH 9.0, 30% PEG 3350, REMARK 280 ALL DISSOLVED IN D2O., LIQUID DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 PRO A -4 REMARK 465 GLY A -3 REMARK 465 TYR A -2 REMARK 465 GLN A -1 REMARK 465 ASP A 0 REMARK 465 ALA A 42 REMARK 465 GLU A 43 REMARK 465 ILE A 44 REMARK 465 GLY B -5 REMARK 465 PRO B -4 REMARK 465 GLY B -3 REMARK 465 TYR B -2 REMARK 465 GLN B -1 REMARK 465 ASP B 0 REMARK 465 VAL B 41 REMARK 465 ALA B 42 REMARK 465 GLU B 43 REMARK 465 ILE B 44 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HO1 GOL B 202 O HOH B 301 1.45 REMARK 500 DO1 GOL B 202 O HOH B 301 1.46 REMARK 500 HO2 GOL B 202 O HOH B 301 1.57 REMARK 500 DO2 GOL B 202 O HOH B 301 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 29 CG GLN A 29 CD 0.205 REMARK 500 GLU A 138 CG GLU A 138 CD 0.100 REMARK 500 TRP A 178 CB TRP A 178 CG -0.114 REMARK 500 PHE B 7 CE1 PHE B 7 CZ 0.124 REMARK 500 TRP B 50 CB TRP B 50 CG 0.113 REMARK 500 GLU B 81 CB GLU B 81 CG 0.125 REMARK 500 CYS B 132 CB CYS B 132 SG -0.138 REMARK 500 TRP B 144 CB TRP B 144 CG 0.114 REMARK 500 SER B 153 CB SER B 153 OG -0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG B 4 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 MET B 76 CG - SD - CE ANGL. DEV. = 11.6 DEGREES REMARK 500 ARG B 104 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 133 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 47 46.85 -99.20 REMARK 500 TYR A 61 -43.68 -138.29 REMARK 500 GLU A 150 -19.20 -40.80 REMARK 500 TYR B 61 -34.32 -137.00 REMARK 500 CYS B 132 -6.87 -145.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HEM A 500 NA 91.3 REMARK 620 3 HEM A 500 NB 96.0 81.9 REMARK 620 4 HEM A 500 NC 90.2 176.8 95.2 REMARK 620 5 HEM A 500 ND 84.1 100.6 177.5 82.4 REMARK 620 6 OH A 501 O 173.6 85.3 88.8 93.5 91.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 203 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 114 NE2 REMARK 620 2 HEM B 203 NA 87.2 REMARK 620 3 HEM B 203 NB 94.8 93.2 REMARK 620 4 HEM B 203 NC 93.5 176.7 89.9 REMARK 620 5 HEM B 203 ND 87.6 88.2 177.3 88.6 REMARK 620 6 OH B 204 O 173.5 89.3 90.8 89.7 86.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OH B 204 DBREF 5NKU A 2 182 UNP B8HNS6 B8HNS6_CYAP4 2 182 DBREF 5NKU B 2 182 UNP B8HNS6 B8HNS6_CYAP4 2 182 SEQADV 5NKU GLY A -5 UNP B8HNS6 EXPRESSION TAG SEQADV 5NKU PRO A -4 UNP B8HNS6 EXPRESSION TAG SEQADV 5NKU GLY A -3 UNP B8HNS6 EXPRESSION TAG SEQADV 5NKU TYR A -2 UNP B8HNS6 EXPRESSION TAG SEQADV 5NKU GLN A -1 UNP B8HNS6 EXPRESSION TAG SEQADV 5NKU ASP A 0 UNP B8HNS6 EXPRESSION TAG SEQADV 5NKU PRO A 1 UNP B8HNS6 EXPRESSION TAG SEQADV 5NKU GLY B -5 UNP B8HNS6 EXPRESSION TAG SEQADV 5NKU PRO B -4 UNP B8HNS6 EXPRESSION TAG SEQADV 5NKU GLY B -3 UNP B8HNS6 EXPRESSION TAG SEQADV 5NKU TYR B -2 UNP B8HNS6 EXPRESSION TAG SEQADV 5NKU GLN B -1 UNP B8HNS6 EXPRESSION TAG SEQADV 5NKU ASP B 0 UNP B8HNS6 EXPRESSION TAG SEQADV 5NKU PRO B 1 UNP B8HNS6 EXPRESSION TAG SEQRES 1 A 188 GLY PRO GLY TYR GLN ASP PRO ASN ASN ARG TYR SER PHE SEQRES 2 A 188 ILE GLY GLY ARG THR GLY GLN TRP GLN VAL VAL LYS ILE SEQRES 3 A 188 ARG ASN VAL LEU GLY PRO GLY LEU GLN LEU VAL GLU LYS SEQRES 4 A 188 VAL ASN ILE LEU ASN GLY ALA VAL ALA GLU ILE PRO LEU SEQRES 5 A 188 ASP SER ALA TRP ARG LEU GLN GLY PHE ALA SER ASN ILE SEQRES 6 A 188 ARG TYR ALA ILE ARG THR GLU LEU GLU ALA LEU GLN ALA SEQRES 7 A 188 VAL GLN PRO MET LEU ASN ARG ALA GLU ALA ILE LEU ALA SEQRES 8 A 188 VAL LEU ILE PRO ILE LYS LYS SER ALA GLN TRP TRP GLU SEQRES 9 A 188 MET ALA GLN ASP GLU ARG ARG ASP ILE PHE GLU ARG GLU SEQRES 10 A 188 SER HIS HIS THR ALA VAL GLY LEU GLU TYR LEU PRO GLY SEQRES 11 A 188 VAL ALA ARG ARG LEU LEU HIS CYS ARG ASP LEU GLY GLU SEQRES 12 A 188 GLU PHE ASP PHE LEU THR TRP PHE GLU PHE ALA PRO GLU SEQRES 13 A 188 HIS SER SER ALA PHE ASN GLU LEU LEU LEU ARG MET ARG SEQRES 14 A 188 ALA SER LYS GLU TRP GLU TYR VAL GLU ARG GLU VAL GLU SEQRES 15 A 188 VAL TRP LEU LYS ARG LEU SEQRES 1 B 188 GLY PRO GLY TYR GLN ASP PRO ASN ASN ARG TYR SER PHE SEQRES 2 B 188 ILE GLY GLY ARG THR GLY GLN TRP GLN VAL VAL LYS ILE SEQRES 3 B 188 ARG ASN VAL LEU GLY PRO GLY LEU GLN LEU VAL GLU LYS SEQRES 4 B 188 VAL ASN ILE LEU ASN GLY ALA VAL ALA GLU ILE PRO LEU SEQRES 5 B 188 ASP SER ALA TRP ARG LEU GLN GLY PHE ALA SER ASN ILE SEQRES 6 B 188 ARG TYR ALA ILE ARG THR GLU LEU GLU ALA LEU GLN ALA SEQRES 7 B 188 VAL GLN PRO MET LEU ASN ARG ALA GLU ALA ILE LEU ALA SEQRES 8 B 188 VAL LEU ILE PRO ILE LYS LYS SER ALA GLN TRP TRP GLU SEQRES 9 B 188 MET ALA GLN ASP GLU ARG ARG ASP ILE PHE GLU ARG GLU SEQRES 10 B 188 SER HIS HIS THR ALA VAL GLY LEU GLU TYR LEU PRO GLY SEQRES 11 B 188 VAL ALA ARG ARG LEU LEU HIS CYS ARG ASP LEU GLY GLU SEQRES 12 B 188 GLU PHE ASP PHE LEU THR TRP PHE GLU PHE ALA PRO GLU SEQRES 13 B 188 HIS SER SER ALA PHE ASN GLU LEU LEU LEU ARG MET ARG SEQRES 14 B 188 ALA SER LYS GLU TRP GLU TYR VAL GLU ARG GLU VAL GLU SEQRES 15 B 188 VAL TRP LEU LYS ARG LEU HET HEM A 500 73 HET OH A 501 3 HET CL B 201 1 HET GOL B 202 17 HET HEM B 203 73 HET OH B 204 3 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM OH HYDROXIDE ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 OH 2(H O 1-) FORMUL 5 CL CL 1- FORMUL 6 GOL C3 H8 O3 FORMUL 9 HOH *110(H2 O) HELIX 1 AA1 ILE A 63 GLN A 74 1 12 HELIX 2 AA2 SER A 93 GLU A 98 1 6 HELIX 3 AA3 ALA A 100 GLU A 109 1 10 HELIX 4 AA4 HIS A 113 GLU A 120 1 8 HELIX 5 AA5 ARG A 133 GLY A 136 5 4 HELIX 6 AA6 ALA A 148 GLU A 150 5 3 HELIX 7 AA7 HIS A 151 ARG A 163 1 13 HELIX 8 AA8 ALA A 164 SER A 165 5 2 HELIX 9 AA9 LYS A 166 GLU A 169 5 4 HELIX 10 AB1 ILE B 63 GLN B 74 1 12 HELIX 11 AB2 SER B 93 MET B 99 1 7 HELIX 12 AB3 ALA B 100 GLU B 109 1 10 HELIX 13 AB4 HIS B 113 GLU B 120 1 8 HELIX 14 AB5 ARG B 133 GLY B 136 5 4 HELIX 15 AB6 ALA B 148 GLU B 150 5 3 HELIX 16 AB7 HIS B 151 ALA B 164 1 14 HELIX 17 AB8 SER B 165 GLU B 169 5 5 SHEET 1 AA1 9 ARG A 4 GLY A 10 0 SHEET 2 AA1 9 LYS A 33 ASN A 38 -1 O LYS A 33 N GLY A 10 SHEET 3 AA1 9 TRP A 15 LEU A 24 -1 N TRP A 15 O VAL A 34 SHEET 4 AA1 9 VAL A 171 ARG A 181 -1 O LYS A 180 N GLN A 16 SHEET 5 AA1 9 LEU A 84 LYS A 92 -1 N ALA A 85 O LEU A 179 SHEET 6 AA1 9 PHE A 141 PHE A 147 -1 O THR A 143 N ILE A 88 SHEET 7 AA1 9 ALA A 126 HIS A 131 -1 N LEU A 130 O LEU A 142 SHEET 8 AA1 9 SER A 48 PHE A 55 -1 N PHE A 55 O HIS A 131 SHEET 9 AA1 9 ARG A 4 GLY A 10 -1 N TYR A 5 O GLY A 54 SHEET 1 AA2 9 ARG B 4 GLY B 10 0 SHEET 2 AA2 9 LYS B 33 ASN B 38 -1 O LYS B 33 N GLY B 10 SHEET 3 AA2 9 TRP B 15 LEU B 24 -1 N TRP B 15 O VAL B 34 SHEET 4 AA2 9 VAL B 171 ARG B 181 -1 O TRP B 178 N VAL B 18 SHEET 5 AA2 9 LEU B 84 LYS B 92 -1 N ALA B 85 O LEU B 179 SHEET 6 AA2 9 PHE B 141 PHE B 147 -1 O THR B 143 N ILE B 88 SHEET 7 AA2 9 ALA B 126 HIS B 131 -1 N ALA B 126 O GLU B 146 SHEET 8 AA2 9 SER B 48 PHE B 55 -1 N PHE B 55 O HIS B 131 SHEET 9 AA2 9 ARG B 4 GLY B 10 -1 N TYR B 5 O GLY B 54 LINK NE2 HIS A 114 FE HEM A 500 1555 1555 2.08 LINK FE HEM A 500 O OH A 501 1555 1555 2.43 LINK NE2 HIS B 114 FE HEM B 203 1555 1555 2.16 LINK FE HEM B 203 O OH B 204 1555 1555 2.23 CISPEP 1 LEU A 122 PRO A 123 0 -6.69 CISPEP 2 LEU B 122 PRO B 123 0 9.29 SITE 1 AC1 22 ILE A 59 ARG A 60 TYR A 61 ALA A 62 SITE 2 AC1 22 LEU A 70 LYS A 92 TRP A 96 PHE A 108 SITE 3 AC1 22 HIS A 114 THR A 115 GLY A 118 ARG A 127 SITE 4 AC1 22 PHE A 141 PHE A 145 LEU A 158 MET A 162 SITE 5 AC1 22 TRP A 168 OH A 501 HOH A 601 HOH A 629 SITE 6 AC1 22 HOH A 631 HOH A 646 SITE 1 AC2 3 ARG A 127 HEM A 500 HOH A 604 SITE 1 AC3 2 ARG A 4 ARG B 4 SITE 1 AC4 4 TYR B 5 ARG B 128 TRP B 144 HOH B 301 SITE 1 AC5 22 ILE B 59 ARG B 60 TYR B 61 ALA B 62 SITE 2 AC5 22 LEU B 70 ILE B 90 LYS B 92 TRP B 96 SITE 3 AC5 22 PHE B 108 HIS B 114 THR B 115 GLY B 118 SITE 4 AC5 22 ARG B 127 PHE B 141 PHE B 145 LEU B 158 SITE 5 AC5 22 MET B 162 OH B 204 HOH B 307 HOH B 331 SITE 6 AC5 22 HOH B 337 HOH B 349 SITE 1 AC6 1 HEM B 203 CRYST1 52.427 53.015 55.337 107.30 98.54 109.86 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019074 0.006888 0.005864 0.00000 SCALE2 0.000000 0.020055 0.008085 0.00000 SCALE3 0.000000 0.000000 0.019703 0.00000