HEADER TRANSFERASE 04-APR-17 5NLM TITLE COMPLEX BETWEEN A UDP-GLUCOSYLTRANSFERASE FROM POLYGONUM TINCTORIUM TITLE 2 CAPABLE OF GLUCOSYLATING INDOXYL AND INDOXYL SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INDOXYL UDP-GLUCOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PERSICARIA TINCTORIA; SOURCE 3 ORGANISM_TAXID: 96455; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: ROSETTA KEYWDS UDPGLUCOSE:INDOXYL GLUCOSYLTRANSFERASE GT-B UGT INDIGO, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.H.WELNER,T.HSU,J.DUEBER,P.D.ADAMS REVDAT 4 17-JAN-24 5NLM 1 REMARK REVDAT 3 30-MAR-22 5NLM 1 DBREF LINK REVDAT 2 21-FEB-18 5NLM 1 JRNL REVDAT 1 31-JAN-18 5NLM 0 JRNL AUTH T.M.HSU,D.H.WELNER,Z.N.RUSS,B.CERVANTES,R.L.PRATHURI, JRNL AUTH 2 P.D.ADAMS,J.E.DUEBER JRNL TITL EMPLOYING A BIOCHEMICAL PROTECTING GROUP FOR A SUSTAINABLE JRNL TITL 2 INDIGO DYEING STRATEGY. JRNL REF NAT. CHEM. BIOL. V. 14 256 2018 JRNL REFN ESSN 1552-4469 JRNL PMID 29309053 JRNL DOI 10.1038/NCHEMBIO.2552 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 55921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5733 - 5.8059 1.00 2953 145 0.1915 0.2134 REMARK 3 2 5.8059 - 4.6094 1.00 2799 144 0.1761 0.1915 REMARK 3 3 4.6094 - 4.0270 1.00 2744 145 0.1683 0.1928 REMARK 3 4 4.0270 - 3.6590 1.00 2738 154 0.1973 0.2239 REMARK 3 5 3.6590 - 3.3968 1.00 2728 156 0.2325 0.2640 REMARK 3 6 3.3968 - 3.1965 1.00 2664 165 0.2575 0.2883 REMARK 3 7 3.1965 - 3.0365 1.00 2705 130 0.2572 0.2710 REMARK 3 8 3.0365 - 2.9043 1.00 2725 143 0.2606 0.3038 REMARK 3 9 2.9043 - 2.7925 1.00 2696 142 0.2634 0.2765 REMARK 3 10 2.7925 - 2.6962 1.00 2670 132 0.2616 0.3123 REMARK 3 11 2.6962 - 2.6119 1.00 2724 125 0.2628 0.3009 REMARK 3 12 2.6119 - 2.5372 1.00 2676 142 0.2522 0.2850 REMARK 3 13 2.5372 - 2.4704 1.00 2683 141 0.2639 0.2958 REMARK 3 14 2.4704 - 2.4101 1.00 2642 147 0.2798 0.3208 REMARK 3 15 2.4101 - 2.3554 1.00 2706 149 0.2866 0.2975 REMARK 3 16 2.3554 - 2.3052 1.00 2614 138 0.2982 0.3101 REMARK 3 17 2.3052 - 2.2591 0.96 2645 119 0.3156 0.3606 REMARK 3 18 2.2591 - 2.2165 0.95 2506 127 0.3352 0.3502 REMARK 3 19 2.2165 - 2.1769 0.88 2361 123 0.3424 0.4162 REMARK 3 20 2.1769 - 2.1400 0.81 2162 113 0.3563 0.3877 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 7193 REMARK 3 ANGLE : 0.516 9776 REMARK 3 CHIRALITY : 0.041 1099 REMARK 3 PLANARITY : 0.004 1264 REMARK 3 DIHEDRAL : 10.689 4341 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.3669 51.9572 3.1742 REMARK 3 T TENSOR REMARK 3 T11: 0.3025 T22: 0.3314 REMARK 3 T33: 0.3815 T12: -0.0135 REMARK 3 T13: 0.0199 T23: -0.1033 REMARK 3 L TENSOR REMARK 3 L11: 5.6199 L22: 3.0431 REMARK 3 L33: 3.9386 L12: -1.3505 REMARK 3 L13: 2.0908 L23: -2.0648 REMARK 3 S TENSOR REMARK 3 S11: 0.1672 S12: -0.2520 S13: 0.5830 REMARK 3 S21: 0.0867 S22: -0.1480 S23: -0.0705 REMARK 3 S31: -0.2347 S32: 0.2274 S33: -0.0086 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.9894 39.3788 2.9270 REMARK 3 T TENSOR REMARK 3 T11: 0.2813 T22: 0.2790 REMARK 3 T33: 0.1816 T12: -0.0219 REMARK 3 T13: -0.0322 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 7.0109 L22: 2.7538 REMARK 3 L33: 1.9186 L12: 0.2383 REMARK 3 L13: -1.0677 L23: 0.1345 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: -0.4494 S13: -0.2565 REMARK 3 S21: 0.1841 S22: -0.0118 S23: 0.0183 REMARK 3 S31: 0.1989 S32: 0.0897 S33: 0.0545 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3360 44.9199 -6.0181 REMARK 3 T TENSOR REMARK 3 T11: 0.2776 T22: 0.3487 REMARK 3 T33: 0.2822 T12: -0.0221 REMARK 3 T13: 0.0688 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 6.4344 L22: 3.7385 REMARK 3 L33: 1.4422 L12: 1.2022 REMARK 3 L13: 0.0795 L23: 0.2494 REMARK 3 S TENSOR REMARK 3 S11: -0.1046 S12: 0.3901 S13: 0.1658 REMARK 3 S21: -0.2247 S22: 0.1687 S23: -0.4574 REMARK 3 S31: 0.0829 S32: 0.1711 S33: -0.0442 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 280 THROUGH 436 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5382 49.7940 6.0761 REMARK 3 T TENSOR REMARK 3 T11: 0.2695 T22: 0.4592 REMARK 3 T33: 0.4107 T12: -0.0297 REMARK 3 T13: 0.0376 T23: -0.1224 REMARK 3 L TENSOR REMARK 3 L11: 8.1184 L22: 3.4100 REMARK 3 L33: 2.1745 L12: -0.7563 REMARK 3 L13: 0.7933 L23: -0.0419 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: -1.0686 S13: 0.5770 REMARK 3 S21: 0.3423 S22: 0.0177 S23: -0.2541 REMARK 3 S31: -0.0431 S32: 0.0298 S33: -0.0403 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 437 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1772 59.4397 -10.0723 REMARK 3 T TENSOR REMARK 3 T11: 0.6102 T22: 0.4423 REMARK 3 T33: 0.9536 T12: 0.0393 REMARK 3 T13: 0.0065 T23: 0.2777 REMARK 3 L TENSOR REMARK 3 L11: 8.8077 L22: 1.0462 REMARK 3 L33: 2.3474 L12: 1.1758 REMARK 3 L13: -0.1518 L23: -0.5241 REMARK 3 S TENSOR REMARK 3 S11: 0.2726 S12: 1.6044 S13: 3.0277 REMARK 3 S21: -0.2177 S22: -0.0183 S23: 0.2218 REMARK 3 S31: -0.5996 S32: -0.0879 S33: -0.0659 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.2863 81.7772 18.1827 REMARK 3 T TENSOR REMARK 3 T11: 0.5579 T22: 0.3498 REMARK 3 T33: 0.6909 T12: -0.0184 REMARK 3 T13: 0.0144 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 3.7192 L22: 7.5984 REMARK 3 L33: 3.3255 L12: 0.6137 REMARK 3 L13: 0.4592 L23: 1.6320 REMARK 3 S TENSOR REMARK 3 S11: 0.0453 S12: -0.0023 S13: 0.8054 REMARK 3 S21: 0.6462 S22: -0.3935 S23: 0.4909 REMARK 3 S31: -0.6141 S32: -0.2473 S33: 0.3503 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 275 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8214 98.8083 9.0461 REMARK 3 T TENSOR REMARK 3 T11: 0.8713 T22: 0.5072 REMARK 3 T33: 1.3505 T12: -0.0301 REMARK 3 T13: -0.0349 T23: 0.1564 REMARK 3 L TENSOR REMARK 3 L11: 5.6073 L22: 1.9808 REMARK 3 L33: 7.3636 L12: -1.3391 REMARK 3 L13: -1.3109 L23: -1.1974 REMARK 3 S TENSOR REMARK 3 S11: 0.1845 S12: 0.3507 S13: 0.7715 REMARK 3 S21: 0.6012 S22: -0.0471 S23: -0.8816 REMARK 3 S31: -1.3756 S32: 0.1056 S33: -0.0877 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 356 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.4354 85.2010 24.3478 REMARK 3 T TENSOR REMARK 3 T11: 0.9340 T22: 0.5164 REMARK 3 T33: 1.0389 T12: -0.0379 REMARK 3 T13: -0.3122 T23: 0.0429 REMARK 3 L TENSOR REMARK 3 L11: 6.7291 L22: 6.1576 REMARK 3 L33: 4.2282 L12: 4.3841 REMARK 3 L13: 0.1370 L23: -0.0346 REMARK 3 S TENSOR REMARK 3 S11: 0.0442 S12: -0.2508 S13: -0.2349 REMARK 3 S21: 1.3801 S22: -0.0353 S23: -1.3174 REMARK 3 S31: -0.6117 S32: 0.7310 S33: -0.0155 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND RESID 1002 REMARK 3 ORIGIN FOR THE GROUP (A): -20.6033 39.5610 0.8298 REMARK 3 T TENSOR REMARK 3 T11: 1.3450 T22: 2.0721 REMARK 3 T33: 0.7783 T12: -0.7903 REMARK 3 T13: 0.0200 T23: 0.1078 REMARK 3 L TENSOR REMARK 3 L11: 8.2151 L22: 1.9989 REMARK 3 L33: 2.0004 L12: 1.9995 REMARK 3 L13: 2.0006 L23: 1.9992 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: 0.1247 S13: 0.1137 REMARK 3 S21: 0.7583 S22: 0.1346 S23: -0.1288 REMARK 3 S31: -0.8379 S32: -0.2842 S33: 0.0175 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND RESID 1001 REMARK 3 ORIGIN FOR THE GROUP (A): -38.4623 89.7943 17.9421 REMARK 3 T TENSOR REMARK 3 T11: 1.4085 T22: 1.5985 REMARK 3 T33: 2.6257 T12: -0.0995 REMARK 3 T13: 0.3797 T23: -0.4313 REMARK 3 L TENSOR REMARK 3 L11: 8.0880 L22: 3.8408 REMARK 3 L33: 1.9992 L12: 0.3484 REMARK 3 L13: -2.3560 L23: -0.2864 REMARK 3 S TENSOR REMARK 3 S11: 1.2117 S12: 0.1431 S13: 0.5186 REMARK 3 S21: -0.1947 S22: -0.9521 S23: 0.2846 REMARK 3 S31: -0.2896 S32: -0.0016 S33: -0.2473 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NLM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004317. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55926 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 48.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.08972 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 1.51900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2VCE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2*6H20, 0.1 M HEPES PH 7.5, REMARK 280 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 60.50000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 86.41000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 60.50000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 86.41000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 GLU A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 PRO A 8 REMARK 465 THR A 9 REMARK 465 ALA A 257 REMARK 465 ALA A 258 REMARK 465 GLY A 315 REMARK 465 ILE A 316 REMARK 465 ALA A 317 REMARK 465 ASN A 318 REMARK 465 ALA A 319 REMARK 465 THR A 320 REMARK 465 VAL A 477 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 GLU B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 PRO B 7 REMARK 465 LEU B 170 REMARK 465 SER B 171 REMARK 465 ASP B 172 REMARK 465 GLY B 251 REMARK 465 SER B 252 REMARK 465 CYS B 253 REMARK 465 GLU B 254 REMARK 465 LYS B 255 REMARK 465 GLY B 256 REMARK 465 ALA B 257 REMARK 465 ALA B 258 REMARK 465 ALA B 319 REMARK 465 THR B 320 REMARK 465 TYR B 321 REMARK 465 PHE B 322 REMARK 465 SER B 323 REMARK 465 VAL B 324 REMARK 465 ASP B 325 REMARK 465 GLY B 326 REMARK 465 GLU B 327 REMARK 465 ILE B 328 REMARK 465 VAL B 477 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 457 HG1 THR B 463 1.33 REMARK 500 O GLN B 341 HG1 THR B 342 1.59 REMARK 500 O SER B 457 OG1 THR B 463 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 145 -163.01 -123.86 REMARK 500 LYS A 255 -73.81 -103.52 REMARK 500 ASN A 279 111.75 -165.42 REMARK 500 SER A 323 -151.50 -101.66 REMARK 500 MET A 351 -54.84 79.92 REMARK 500 ALA A 393 -132.49 57.16 REMARK 500 ALA B 118 148.96 -170.80 REMARK 500 SER B 145 -153.20 -122.89 REMARK 500 VAL B 182 144.49 -170.64 REMARK 500 GLN B 249 -169.33 -72.53 REMARK 500 GLU B 262 -112.78 75.69 REMARK 500 GLN B 269 41.81 -84.48 REMARK 500 ASP B 314 41.89 -166.16 REMARK 500 MET B 351 -54.58 79.91 REMARK 500 LEU B 391 -66.26 -138.54 REMARK 500 ALA B 393 -150.37 49.98 REMARK 500 MET B 397 -40.70 114.98 REMARK 500 SER B 457 -157.50 -104.29 REMARK 500 SER B 461 -57.59 61.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1004 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 53 O REMARK 620 2 PRO A 234 O 48.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOS A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOS B 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1001 DBREF 5NLM A 0 477 PDB 5NLM 5NLM 0 477 DBREF 5NLM B 0 477 PDB 5NLM 5NLM 0 477 SEQRES 1 A 478 GLY SER GLU SER PRO ALA ALA PRO PRO THR THR ALA PRO SEQRES 2 A 478 PRO PRO HIS VAL ILE ILE VAL PRO SER ALA GLY MET GLY SEQRES 3 A 478 HIS LEU ILE PRO LEU ALA GLU PHE ALA LYS ARG LEU LEU SEQRES 4 A 478 PRO ARG PHE THR PHE THR PHE ALA VAL PRO THR SER GLY SEQRES 5 A 478 PRO PRO SER SER SER GLN ARG ASP PHE LEU SER SER LEU SEQRES 6 A 478 PRO ALA SER ILE ASP THR SER PHE LEU PRO GLU VAL ASP SEQRES 7 A 478 LEU SER ASP ALA PRO SER ASP ALA GLN ILE GLU THR LEU SEQRES 8 A 478 MET SER LEU MET VAL VAL ARG SER LEU PRO SER LEU ARG SEQRES 9 A 478 ASP LEU ILE ALA SER TYR SER ALA SER GLY ARG ARG VAL SEQRES 10 A 478 ALA ALA LEU VAL VAL ASP LEU PHE ALA THR ASP ALA ILE SEQRES 11 A 478 ASP VAL ALA LEU GLU LEU GLY ILE ARG PRO PHE ILE PHE SEQRES 12 A 478 PHE PRO SER THR ALA MET THR LEU SER PHE PHE LEU HIS SEQRES 13 A 478 LEU GLU LYS LEU ASP GLU THR VAL SER CYS GLU PHE ALA SEQRES 14 A 478 GLU LEU SER ASP PRO VAL GLN ILE PRO GLY CYS ILE PRO SEQRES 15 A 478 VAL HIS GLY LYS ASP LEU ILE ASP PRO VAL GLN ASP ARG SEQRES 16 A 478 LYS ASN ASP ALA TYR LYS TRP LEU LEU HIS HIS SER LYS SEQRES 17 A 478 ARG TYR LYS LEU ALA GLU GLY VAL ILE VAL ASN SER PHE SEQRES 18 A 478 GLU GLY LEU GLU GLY GLY PRO ILE ARG GLU LEU LEU HIS SEQRES 19 A 478 PRO GLU PRO GLY LYS PRO ARG VAL TYR PRO VAL GLY PRO SEQRES 20 A 478 LEU ILE GLN ALA GLY SER CYS GLU LYS GLY ALA ALA ALA SEQRES 21 A 478 ARG PRO GLU CYS LEU LYS TRP LEU ASP GLN GLN PRO ARG SEQRES 22 A 478 GLY SER VAL LEU PHE VAL ASN PHE GLY SER GLY GLY VAL SEQRES 23 A 478 LEU SER THR GLU GLN GLN ASN GLU LEU ALA GLY VAL LEU SEQRES 24 A 478 ALA HIS SER GLN GLN ARG PHE LEU TRP VAL VAL ARG PRO SEQRES 25 A 478 PRO ASN ASP GLY ILE ALA ASN ALA THR TYR PHE SER VAL SEQRES 26 A 478 ASP GLY GLU ILE ASP PRO LEU LYS LEU LEU PRO GLU GLY SEQRES 27 A 478 PHE LEU GLU GLN THR ALA GLY ARG GLY LEU VAL LEU PRO SEQRES 28 A 478 MET TRP ALA PRO GLN ILE ASP VAL LEU SER HIS GLU SER SEQRES 29 A 478 THR GLY GLY PHE LEU THR HIS CYS GLY TRP ASN SER THR SEQRES 30 A 478 LEU GLU SER VAL PHE HIS GLY VAL PRO LEU ILE THR TRP SEQRES 31 A 478 PRO LEU TYR ALA GLU GLN LYS MET ASN ALA VAL MET LEU SEQRES 32 A 478 THR GLU GLY LEU ARG VAL GLY LEU ARG PRO SER VAL GLY SEQRES 33 A 478 LYS ASP GLY ILE ILE ARG GLY ALA GLU ILE ALA ARG VAL SEQRES 34 A 478 ILE GLY GLU LEU MET GLU GLY GLU GLU GLY LYS ARG ILE SEQRES 35 A 478 ARG SER LYS MET GLN GLU LEU LYS ARG ALA ALA SER ALA SEQRES 36 A 478 VAL LEU SER LYS ASP GLY SER SER THR ARG ALA LEU GLU SEQRES 37 A 478 GLU VAL ALA LYS ILE TRP GLU SER LYS VAL SEQRES 1 B 478 GLY SER GLU SER PRO ALA ALA PRO PRO THR THR ALA PRO SEQRES 2 B 478 PRO PRO HIS VAL ILE ILE VAL PRO SER ALA GLY MET GLY SEQRES 3 B 478 HIS LEU ILE PRO LEU ALA GLU PHE ALA LYS ARG LEU LEU SEQRES 4 B 478 PRO ARG PHE THR PHE THR PHE ALA VAL PRO THR SER GLY SEQRES 5 B 478 PRO PRO SER SER SER GLN ARG ASP PHE LEU SER SER LEU SEQRES 6 B 478 PRO ALA SER ILE ASP THR SER PHE LEU PRO GLU VAL ASP SEQRES 7 B 478 LEU SER ASP ALA PRO SER ASP ALA GLN ILE GLU THR LEU SEQRES 8 B 478 MET SER LEU MET VAL VAL ARG SER LEU PRO SER LEU ARG SEQRES 9 B 478 ASP LEU ILE ALA SER TYR SER ALA SER GLY ARG ARG VAL SEQRES 10 B 478 ALA ALA LEU VAL VAL ASP LEU PHE ALA THR ASP ALA ILE SEQRES 11 B 478 ASP VAL ALA LEU GLU LEU GLY ILE ARG PRO PHE ILE PHE SEQRES 12 B 478 PHE PRO SER THR ALA MET THR LEU SER PHE PHE LEU HIS SEQRES 13 B 478 LEU GLU LYS LEU ASP GLU THR VAL SER CYS GLU PHE ALA SEQRES 14 B 478 GLU LEU SER ASP PRO VAL GLN ILE PRO GLY CYS ILE PRO SEQRES 15 B 478 VAL HIS GLY LYS ASP LEU ILE ASP PRO VAL GLN ASP ARG SEQRES 16 B 478 LYS ASN ASP ALA TYR LYS TRP LEU LEU HIS HIS SER LYS SEQRES 17 B 478 ARG TYR LYS LEU ALA GLU GLY VAL ILE VAL ASN SER PHE SEQRES 18 B 478 GLU GLY LEU GLU GLY GLY PRO ILE ARG GLU LEU LEU HIS SEQRES 19 B 478 PRO GLU PRO GLY LYS PRO ARG VAL TYR PRO VAL GLY PRO SEQRES 20 B 478 LEU ILE GLN ALA GLY SER CYS GLU LYS GLY ALA ALA ALA SEQRES 21 B 478 ARG PRO GLU CYS LEU LYS TRP LEU ASP GLN GLN PRO ARG SEQRES 22 B 478 GLY SER VAL LEU PHE VAL ASN PHE GLY SER GLY GLY VAL SEQRES 23 B 478 LEU SER THR GLU GLN GLN ASN GLU LEU ALA GLY VAL LEU SEQRES 24 B 478 ALA HIS SER GLN GLN ARG PHE LEU TRP VAL VAL ARG PRO SEQRES 25 B 478 PRO ASN ASP GLY ILE ALA ASN ALA THR TYR PHE SER VAL SEQRES 26 B 478 ASP GLY GLU ILE ASP PRO LEU LYS LEU LEU PRO GLU GLY SEQRES 27 B 478 PHE LEU GLU GLN THR ALA GLY ARG GLY LEU VAL LEU PRO SEQRES 28 B 478 MET TRP ALA PRO GLN ILE ASP VAL LEU SER HIS GLU SER SEQRES 29 B 478 THR GLY GLY PHE LEU THR HIS CYS GLY TRP ASN SER THR SEQRES 30 B 478 LEU GLU SER VAL PHE HIS GLY VAL PRO LEU ILE THR TRP SEQRES 31 B 478 PRO LEU TYR ALA GLU GLN LYS MET ASN ALA VAL MET LEU SEQRES 32 B 478 THR GLU GLY LEU ARG VAL GLY LEU ARG PRO SER VAL GLY SEQRES 33 B 478 LYS ASP GLY ILE ILE ARG GLY ALA GLU ILE ALA ARG VAL SEQRES 34 B 478 ILE GLY GLU LEU MET GLU GLY GLU GLU GLY LYS ARG ILE SEQRES 35 B 478 ARG SER LYS MET GLN GLU LEU LYS ARG ALA ALA SER ALA SEQRES 36 B 478 VAL LEU SER LYS ASP GLY SER SER THR ARG ALA LEU GLU SEQRES 37 B 478 GLU VAL ALA LYS ILE TRP GLU SER LYS VAL HET IOS A1000 20 HET MG A1001 1 HET MG A1002 1 HET MG A1003 1 HET MG A1004 1 HET IOS B1000 20 HET MG B1001 1 HETNAM IOS 3-SULFOOXY-1H-INDOLE HETNAM MG MAGNESIUM ION FORMUL 3 IOS 2(C8 H7 N O4 S) FORMUL 4 MG 5(MG 2+) FORMUL 10 HOH *104(H2 O) HELIX 1 AA1 GLY A 23 ARG A 36 1 14 HELIX 2 AA2 SER A 54 SER A 63 1 10 HELIX 3 AA3 GLN A 86 ARG A 97 1 12 HELIX 4 AA4 SER A 98 SER A 112 1 15 HELIX 5 AA5 ALA A 125 ASP A 127 5 3 HELIX 6 AA6 ALA A 128 LEU A 135 1 8 HELIX 7 AA7 THR A 146 VAL A 163 1 18 HELIX 8 AA8 GLU A 166 LEU A 170 5 5 HELIX 9 AA9 HIS A 183 LEU A 187 5 5 HELIX 10 AB1 ILE A 188 GLN A 192 5 5 HELIX 11 AB2 ASN A 196 LYS A 207 1 12 HELIX 12 AB3 ARG A 208 ALA A 212 5 5 HELIX 13 AB4 GLU A 224 HIS A 233 1 10 HELIX 14 AB5 PRO A 261 GLN A 270 1 10 HELIX 15 AB6 SER A 287 SER A 301 1 15 HELIX 16 AB7 ASP A 329 LEU A 333 5 5 HELIX 17 AB8 GLY A 337 THR A 342 1 6 HELIX 18 AB9 PRO A 354 HIS A 361 1 8 HELIX 19 AC1 GLY A 372 HIS A 382 1 11 HELIX 20 AC2 GLU A 394 GLY A 405 1 12 HELIX 21 AC3 ARG A 421 GLU A 434 1 14 HELIX 22 AC4 GLY A 435 LEU A 456 1 22 HELIX 23 AC5 GLY A 460 SER A 475 1 16 HELIX 24 AC6 GLY B 23 LEU B 37 1 15 HELIX 25 AC7 SER B 54 SER B 63 1 10 HELIX 26 AC8 GLN B 86 TYR B 109 1 24 HELIX 27 AC9 ALA B 125 ASP B 127 5 3 HELIX 28 AD1 ALA B 128 LEU B 135 1 8 HELIX 29 AD2 THR B 146 VAL B 163 1 18 HELIX 30 AD3 HIS B 183 LEU B 187 5 5 HELIX 31 AD4 ILE B 188 GLN B 192 5 5 HELIX 32 AD5 ASN B 196 ARG B 208 1 13 HELIX 33 AD6 TYR B 209 ALA B 212 5 4 HELIX 34 AD7 GLU B 224 HIS B 233 1 10 HELIX 35 AD8 GLU B 262 LEU B 267 1 6 HELIX 36 AD9 ASP B 268 GLN B 270 5 3 HELIX 37 AE1 SER B 287 SER B 301 1 15 HELIX 38 AE2 PRO B 354 HIS B 361 1 8 HELIX 39 AE3 GLY B 372 HIS B 382 1 11 HELIX 40 AE4 GLU B 394 GLU B 404 1 11 HELIX 41 AE5 ARG B 421 GLU B 434 1 14 HELIX 42 AE6 GLY B 435 VAL B 455 1 21 HELIX 43 AE7 SER B 461 SER B 475 1 15 SHEET 1 AA1 7 ILE A 68 PHE A 72 0 SHEET 2 AA1 7 THR A 42 VAL A 47 1 N PHE A 43 O ASP A 69 SHEET 3 AA1 7 HIS A 15 VAL A 19 1 N ILE A 18 O ALA A 46 SHEET 4 AA1 7 VAL A 116 VAL A 121 1 O VAL A 120 N VAL A 19 SHEET 5 AA1 7 ARG A 138 PHE A 143 1 O PHE A 140 N LEU A 119 SHEET 6 AA1 7 GLY A 214 VAL A 217 1 O ILE A 216 N PHE A 143 SHEET 7 AA1 7 VAL A 241 PRO A 243 1 O TYR A 242 N VAL A 215 SHEET 1 AA2 6 GLY A 346 PRO A 350 0 SHEET 2 AA2 6 ARG A 304 VAL A 309 1 N VAL A 309 O LEU A 349 SHEET 3 AA2 6 VAL A 275 ASN A 279 1 N VAL A 278 O LEU A 306 SHEET 4 AA2 6 THR A 364 THR A 369 1 O LEU A 368 N PHE A 277 SHEET 5 AA2 6 LEU A 386 THR A 388 1 O ILE A 387 N PHE A 367 SHEET 6 AA2 6 GLY A 409 LEU A 410 1 O LEU A 410 N THR A 388 SHEET 1 AA3 7 ILE B 68 PHE B 72 0 SHEET 2 AA3 7 THR B 42 VAL B 47 1 N PHE B 45 O SER B 71 SHEET 3 AA3 7 HIS B 15 VAL B 19 1 N ILE B 18 O ALA B 46 SHEET 4 AA3 7 VAL B 116 VAL B 121 1 O VAL B 120 N VAL B 19 SHEET 5 AA3 7 PRO B 139 PHE B 143 1 O PHE B 140 N LEU B 119 SHEET 6 AA3 7 GLY B 214 VAL B 217 1 O ILE B 216 N PHE B 143 SHEET 7 AA3 7 ARG B 240 PRO B 243 1 O ARG B 240 N VAL B 215 SHEET 1 AA4 6 GLY B 346 PRO B 350 0 SHEET 2 AA4 6 ARG B 304 VAL B 309 1 N TRP B 307 O LEU B 349 SHEET 3 AA4 6 VAL B 275 ASN B 279 1 N VAL B 278 O LEU B 306 SHEET 4 AA4 6 THR B 364 THR B 369 1 O LEU B 368 N PHE B 277 SHEET 5 AA4 6 LEU B 386 THR B 388 1 O ILE B 387 N PHE B 367 SHEET 6 AA4 6 GLY B 409 LEU B 410 1 O LEU B 410 N THR B 388 LINK O PRO A 53 MG MG A1004 1555 1555 2.92 LINK O PRO A 234 MG MG A1004 1555 1554 2.37 LINK O GLY A 365 MG MG A1003 1555 1555 2.87 LINK MG MG A1001 O HOH A1123 1555 1555 2.86 LINK OE1 GLU B 32 MG MG B1001 1555 1555 2.55 CISPEP 1 LEU A 38 PRO A 39 0 -3.26 CISPEP 2 GLY A 245 PRO A 246 0 0.18 CISPEP 3 GLY B 245 PRO B 246 0 0.18 CISPEP 4 LYS B 458 ASP B 459 0 12.12 SITE 1 AC1 5 HIS A 26 GLU A 88 ALA A 393 MG A1001 SITE 2 AC1 5 HOH A1161 SITE 1 AC2 4 GLU A 88 ALA A 393 IOS A1000 HOH A1123 SITE 1 AC3 3 GLY A 372 ASN A 374 SER A 375 SITE 1 AC4 3 GLY A 365 PRO A 385 ARG A 442 SITE 1 AC5 4 PRO A 53 ARG A 58 HIS A 233 PRO A 234 SITE 1 AC6 6 HIS B 26 GLU B 88 LEU B 123 PHE B 124 SITE 2 AC6 6 SER B 145 ALA B 393 SITE 1 AC7 2 GLU B 32 ARG B 36 CRYST1 121.000 172.820 48.410 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008264 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020657 0.00000