HEADER SIGNALING PROTEIN 05-APR-17 5NM4 TITLE A2A ADENOSINE RECEPTOR ROOM-TEMPERATURE STRUCTURE DETERMINED BY SERIAL TITLE 2 FEMTOSECOND CRYSTALLOGRAPHY COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE RECEPTOR A2A,SOLUBLE CYTOCHROME B562,ADENOSINE COMPND 3 RECEPTOR A2A; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: CYTOCHROME B-562; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ESCHERICHIA COLI; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 562; SOURCE 5 GENE: ADORA2A, ADORA2, CYBC; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS ROOM-TEMPERATURE, SERIAL CRYSTALLOGRAPHY, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.WEINERT,R.CHENG,D.JAMES,D.GASHI,P.NOGLY,K.JAEGER,M.HENNIG, AUTHOR 2 J.STANDFUSS REVDAT 4 06-NOV-24 5NM4 1 REMARK REVDAT 3 14-NOV-18 5NM4 1 REMARK REVDAT 2 24-JAN-18 5NM4 1 REMARK REVDAT 1 27-SEP-17 5NM4 0 JRNL AUTH T.WEINERT,N.OLIERIC,R.CHENG,S.BRUNLE,D.JAMES,D.OZEROV, JRNL AUTH 2 D.GASHI,L.VERA,M.MARSH,K.JAEGER,F.DWORKOWSKI,E.PANEPUCCI, JRNL AUTH 3 S.BASU,P.SKOPINTSEV,A.S.DORE,T.GENG,R.M.COOKE,M.LIANG, JRNL AUTH 4 A.E.PROTA,V.PANNEELS,P.NOGLY,U.ERMLER,G.SCHERTLER,M.HENNIG, JRNL AUTH 5 M.O.STEINMETZ,M.WANG,J.STANDFUSS JRNL TITL SERIAL MILLISECOND CRYSTALLOGRAPHY FOR ROUTINE JRNL TITL 2 ROOM-TEMPERATURE STRUCTURE DETERMINATION AT SYNCHROTRONS. JRNL REF NAT COMMUN V. 8 542 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28912485 JRNL DOI 10.1038/S41467-017-00630-4 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 53302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 2606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.5881 - 4.5187 1.00 3035 138 0.2437 0.2467 REMARK 3 2 4.5187 - 3.5938 1.00 2905 132 0.1946 0.2259 REMARK 3 3 3.5938 - 3.1417 1.00 2858 165 0.1761 0.2115 REMARK 3 4 3.1417 - 2.8554 1.00 2812 140 0.1713 0.1915 REMARK 3 5 2.8554 - 2.6512 1.00 2848 142 0.1692 0.1894 REMARK 3 6 2.6512 - 2.4952 1.00 2795 161 0.1729 0.2267 REMARK 3 7 2.4952 - 2.3705 1.00 2821 155 0.1911 0.2118 REMARK 3 8 2.3705 - 2.2675 1.00 2821 144 0.1914 0.2406 REMARK 3 9 2.2675 - 2.1803 1.00 2786 153 0.2155 0.2327 REMARK 3 10 2.1803 - 2.1052 1.00 2768 140 0.2260 0.2705 REMARK 3 11 2.1052 - 2.0394 1.00 2818 138 0.2625 0.3054 REMARK 3 12 2.0394 - 1.9812 1.00 2741 163 0.2838 0.3058 REMARK 3 13 1.9812 - 1.9291 0.99 2809 119 0.3186 0.3608 REMARK 3 14 1.9291 - 1.8820 0.98 2729 143 0.3385 0.3418 REMARK 3 15 1.8820 - 1.8393 0.96 2659 136 0.3593 0.3715 REMARK 3 16 1.8393 - 1.8002 0.93 2564 131 0.3700 0.3919 REMARK 3 17 1.8002 - 1.7642 0.87 2416 125 0.3941 0.4032 REMARK 3 18 1.7642 - 1.7309 0.77 2129 107 0.4120 0.3705 REMARK 3 19 1.7309 - 1.7000 0.49 1382 74 0.4395 0.5123 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3183 REMARK 3 ANGLE : 1.139 4362 REMARK 3 CHIRALITY : 0.057 529 REMARK 3 PLANARITY : 0.009 527 REMARK 3 DIHEDRAL : 14.649 1919 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3064 85.9613 49.9518 REMARK 3 T TENSOR REMARK 3 T11: 0.3939 T22: 0.3953 REMARK 3 T33: 0.2856 T12: -0.0084 REMARK 3 T13: 0.0106 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.2877 L22: 2.1161 REMARK 3 L33: 2.0172 L12: -0.1390 REMARK 3 L13: 0.2396 L23: -0.3973 REMARK 3 S TENSOR REMARK 3 S11: 0.0149 S12: 0.0176 S13: -0.0694 REMARK 3 S21: -0.0129 S22: -0.0176 S23: -0.1010 REMARK 3 S31: 0.1441 S32: 0.1444 S33: 0.0138 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 196 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7807 57.0558 51.0262 REMARK 3 T TENSOR REMARK 3 T11: 0.7304 T22: 0.5137 REMARK 3 T33: 0.9807 T12: -0.0572 REMARK 3 T13: -0.0520 T23: -0.0611 REMARK 3 L TENSOR REMARK 3 L11: 5.4264 L22: 9.1703 REMARK 3 L33: 1.0205 L12: 7.0515 REMARK 3 L13: -1.9915 L23: -2.5120 REMARK 3 S TENSOR REMARK 3 S11: 0.0164 S12: 0.2404 S13: -0.7768 REMARK 3 S21: 0.0724 S22: 0.1078 S23: 0.5042 REMARK 3 S31: 0.3662 S32: -0.1089 S33: -0.3140 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 236 THROUGH 318 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.5906 32.3198 49.2025 REMARK 3 T TENSOR REMARK 3 T11: 0.6695 T22: 0.4527 REMARK 3 T33: 1.1100 T12: -0.0779 REMARK 3 T13: -0.0802 T23: 0.0940 REMARK 3 L TENSOR REMARK 3 L11: 5.2139 L22: 2.6659 REMARK 3 L33: 6.7576 L12: -2.5115 REMARK 3 L13: 1.3321 L23: 1.4497 REMARK 3 S TENSOR REMARK 3 S11: 0.3337 S12: 0.1223 S13: -0.0949 REMARK 3 S21: 0.8857 S22: 0.0775 S23: 0.0852 REMARK 3 S31: 0.0138 S32: -0.0547 S33: -0.1001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 319 THROUGH 409 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2604 77.3607 58.7467 REMARK 3 T TENSOR REMARK 3 T11: 0.5939 T22: 0.4582 REMARK 3 T33: 0.3985 T12: -0.0415 REMARK 3 T13: 0.0556 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 1.5016 L22: 2.4076 REMARK 3 L33: 1.2482 L12: -0.1923 REMARK 3 L13: 0.3278 L23: 0.2810 REMARK 3 S TENSOR REMARK 3 S11: 0.0337 S12: -0.1506 S13: -0.2919 REMARK 3 S21: 0.3780 S22: -0.0524 S23: 0.1352 REMARK 3 S31: 0.4154 S32: -0.0118 S33: 0.0259 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004257. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : CXI REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE CXI REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.3 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : CS-PAD CXI-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56793 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 23.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 53.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE PH 5.0, 0.05M REMARK 280 SODIUM THIOCYANATE, 28-34% PEG400, 5 MM ZM241385, 2% (V/V) 1,6- REMARK 280 HEXANEDIOL, LIPIDIC CUBIC PHASE, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.60000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.60000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 19.94500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 89.57500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 19.94500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 89.57500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.60000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 19.94500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 89.57500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.60000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 19.94500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 89.57500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 TYR A 2 REMARK 465 LYS A 3 REMARK 465 ASP A 4 REMARK 465 ASP A 5 REMARK 465 ASP A 6 REMARK 465 ASP A 7 REMARK 465 GLY A 8 REMARK 465 THR A 261 REMARK 465 PRO A 262 REMARK 465 PRO A 263 REMARK 465 LYS A 264 REMARK 465 LEU A 265 REMARK 465 GLU A 266 REMARK 465 ASP A 267 REMARK 465 LYS A 268 REMARK 465 SER A 269 REMARK 465 PRO A 270 REMARK 465 ASP A 271 REMARK 465 SER A 272 REMARK 465 PRO A 273 REMARK 465 GLU A 274 REMARK 465 MET A 275 REMARK 465 LYS A 276 REMARK 465 ASP A 277 REMARK 465 PHE A 278 REMARK 465 ARG A 279 REMARK 465 SER A 410 REMARK 465 HIS A 411 REMARK 465 VAL A 412 REMARK 465 LEU A 413 REMARK 465 ARG A 414 REMARK 465 GLN A 415 REMARK 465 GLN A 416 REMARK 465 GLU A 417 REMARK 465 PRO A 418 REMARK 465 PHE A 419 REMARK 465 LYS A 420 REMARK 465 ALA A 421 REMARK 465 ALA A 422 REMARK 465 ALA A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 HIS A 427 REMARK 465 HIS A 428 REMARK 465 HIS A 429 REMARK 465 HIS A 430 REMARK 465 HIS A 431 REMARK 465 HIS A 432 REMARK 465 HIS A 433 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 120 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 124 CG CD1 CD2 REMARK 470 GLN A 157 CG CD OE1 NE2 REMARK 470 GLU A 170 CG CD OE1 OE2 REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 ASN A 223 CG OD1 ND2 REMARK 470 GLU A 225 CG CD OE1 OE2 REMARK 470 ASP A 229 CG OD1 OD2 REMARK 470 ASP A 238 CG OD1 OD2 REMARK 470 ASN A 239 CG OD1 ND2 REMARK 470 GLN A 242 CG CD OE1 NE2 REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 HIS A 280 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 293 CG CD1 CD2 REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 ASN A 297 CG OD1 ND2 REMARK 470 GLU A 298 CG CD OE1 OE2 REMARK 470 GLN A 310 CG CD OE1 NE2 REMARK 470 LYS A 312 CG CD CE NZ REMARK 470 LYS A 332 CG CD CE NZ REMARK 470 LYS A 338 CG CD CE NZ REMARK 470 ARG A 398 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 405 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 406 CG CD CE NZ REMARK 470 ARG A 409 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 245 HZ3 LYS A 249 1.55 REMARK 500 O GLY A 78 HE22 GLN A 166 1.58 REMARK 500 O GLY A 171 O HOH A 601 2.11 REMARK 500 NE2 GLN A 320 OE2 GLU A 324 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 67 -50.55 -122.01 REMARK 500 ALA A 237 92.07 -24.24 REMARK 500 ASP A 238 -118.61 -100.45 REMARK 500 LYS A 300 75.73 -100.57 REMARK 500 TYR A 318 -53.11 -133.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLA A 503 REMARK 610 OLA A 505 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 506 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 61 OD1 REMARK 620 2 SER A 100 OG 125.1 REMARK 620 3 HOH A 610 O 101.0 120.4 REMARK 620 4 HOH A 637 O 83.7 126.5 90.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZMA A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 510 DBREF 5NM4 A 11 217 UNP P29274 AA2AR_HUMAN 2 208 DBREF 5NM4 A 218 322 UNP P0ABE7 C562_ECOLX 23 127 DBREF 5NM4 A 324 422 UNP P29274 AA2AR_HUMAN 219 317 SEQADV 5NM4 ASP A 1 UNP P29274 EXPRESSION TAG SEQADV 5NM4 TYR A 2 UNP P29274 EXPRESSION TAG SEQADV 5NM4 LYS A 3 UNP P29274 EXPRESSION TAG SEQADV 5NM4 ASP A 4 UNP P29274 EXPRESSION TAG SEQADV 5NM4 ASP A 5 UNP P29274 EXPRESSION TAG SEQADV 5NM4 ASP A 6 UNP P29274 EXPRESSION TAG SEQADV 5NM4 ASP A 7 UNP P29274 EXPRESSION TAG SEQADV 5NM4 GLY A 8 UNP P29274 EXPRESSION TAG SEQADV 5NM4 ALA A 9 UNP P29274 EXPRESSION TAG SEQADV 5NM4 PRO A 10 UNP P29274 EXPRESSION TAG SEQADV 5NM4 LEU A 63 UNP P29274 ALA 54 ENGINEERED MUTATION SEQADV 5NM4 ALA A 97 UNP P29274 THR 88 ENGINEERED MUTATION SEQADV 5NM4 ALA A 116 UNP P29274 ARG 107 ENGINEERED MUTATION SEQADV 5NM4 ALA A 131 UNP P29274 LYS 122 ENGINEERED MUTATION SEQADV 5NM4 ALA A 163 UNP P29274 ASN 154 ENGINEERED MUTATION SEQADV 5NM4 ALA A 211 UNP P29274 LEU 202 ENGINEERED MUTATION SEQADV 5NM4 TRP A 224 UNP P0ABE7 MET 29 CONFLICT SEQADV 5NM4 ILE A 319 UNP P0ABE7 HIS 124 CONFLICT SEQADV 5NM4 LEU A 323 UNP P0ABE7 LINKER SEQADV 5NM4 ALA A 340 UNP P29274 LEU 235 ENGINEERED MUTATION SEQADV 5NM4 ALA A 344 UNP P29274 VAL 239 ENGINEERED MUTATION SEQADV 5NM4 ALA A 382 UNP P29274 SER 277 ENGINEERED MUTATION SEQADV 5NM4 ALA A 423 UNP P29274 EXPRESSION TAG SEQADV 5NM4 HIS A 424 UNP P29274 EXPRESSION TAG SEQADV 5NM4 HIS A 425 UNP P29274 EXPRESSION TAG SEQADV 5NM4 HIS A 426 UNP P29274 EXPRESSION TAG SEQADV 5NM4 HIS A 427 UNP P29274 EXPRESSION TAG SEQADV 5NM4 HIS A 428 UNP P29274 EXPRESSION TAG SEQADV 5NM4 HIS A 429 UNP P29274 EXPRESSION TAG SEQADV 5NM4 HIS A 430 UNP P29274 EXPRESSION TAG SEQADV 5NM4 HIS A 431 UNP P29274 EXPRESSION TAG SEQADV 5NM4 HIS A 432 UNP P29274 EXPRESSION TAG SEQADV 5NM4 HIS A 433 UNP P29274 EXPRESSION TAG SEQRES 1 A 433 ASP TYR LYS ASP ASP ASP ASP GLY ALA PRO PRO ILE MET SEQRES 2 A 433 GLY SER SER VAL TYR ILE THR VAL GLU LEU ALA ILE ALA SEQRES 3 A 433 VAL LEU ALA ILE LEU GLY ASN VAL LEU VAL CYS TRP ALA SEQRES 4 A 433 VAL TRP LEU ASN SER ASN LEU GLN ASN VAL THR ASN TYR SEQRES 5 A 433 PHE VAL VAL SER LEU ALA ALA ALA ASP ILE LEU VAL GLY SEQRES 6 A 433 VAL LEU ALA ILE PRO PHE ALA ILE THR ILE SER THR GLY SEQRES 7 A 433 PHE CYS ALA ALA CYS HIS GLY CYS LEU PHE ILE ALA CYS SEQRES 8 A 433 PHE VAL LEU VAL LEU ALA GLN SER SER ILE PHE SER LEU SEQRES 9 A 433 LEU ALA ILE ALA ILE ASP ARG TYR ILE ALA ILE ALA ILE SEQRES 10 A 433 PRO LEU ARG TYR ASN GLY LEU VAL THR GLY THR ARG ALA SEQRES 11 A 433 ALA GLY ILE ILE ALA ILE CYS TRP VAL LEU SER PHE ALA SEQRES 12 A 433 ILE GLY LEU THR PRO MET LEU GLY TRP ASN ASN CYS GLY SEQRES 13 A 433 GLN PRO LYS GLU GLY LYS ALA HIS SER GLN GLY CYS GLY SEQRES 14 A 433 GLU GLY GLN VAL ALA CYS LEU PHE GLU ASP VAL VAL PRO SEQRES 15 A 433 MET ASN TYR MET VAL TYR PHE ASN PHE PHE ALA CYS VAL SEQRES 16 A 433 LEU VAL PRO LEU LEU LEU MET LEU GLY VAL TYR LEU ARG SEQRES 17 A 433 ILE PHE ALA ALA ALA ARG ARG GLN LEU ALA ASP LEU GLU SEQRES 18 A 433 ASP ASN TRP GLU THR LEU ASN ASP ASN LEU LYS VAL ILE SEQRES 19 A 433 GLU LYS ALA ASP ASN ALA ALA GLN VAL LYS ASP ALA LEU SEQRES 20 A 433 THR LYS MET ARG ALA ALA ALA LEU ASP ALA GLN LYS ALA SEQRES 21 A 433 THR PRO PRO LYS LEU GLU ASP LYS SER PRO ASP SER PRO SEQRES 22 A 433 GLU MET LYS ASP PHE ARG HIS GLY PHE ASP ILE LEU VAL SEQRES 23 A 433 GLY GLN ILE ASP ASP ALA LEU LYS LEU ALA ASN GLU GLY SEQRES 24 A 433 LYS VAL LYS GLU ALA GLN ALA ALA ALA GLU GLN LEU LYS SEQRES 25 A 433 THR THR ARG ASN ALA TYR ILE GLN LYS TYR LEU GLU ARG SEQRES 26 A 433 ALA ARG SER THR LEU GLN LYS GLU VAL HIS ALA ALA LYS SEQRES 27 A 433 SER ALA ALA ILE ILE ALA GLY LEU PHE ALA LEU CYS TRP SEQRES 28 A 433 LEU PRO LEU HIS ILE ILE ASN CYS PHE THR PHE PHE CYS SEQRES 29 A 433 PRO ASP CYS SER HIS ALA PRO LEU TRP LEU MET TYR LEU SEQRES 30 A 433 ALA ILE VAL LEU ALA HIS THR ASN SER VAL VAL ASN PRO SEQRES 31 A 433 PHE ILE TYR ALA TYR ARG ILE ARG GLU PHE ARG GLN THR SEQRES 32 A 433 PHE ARG LYS ILE ILE ARG SER HIS VAL LEU ARG GLN GLN SEQRES 33 A 433 GLU PRO PHE LYS ALA ALA ALA HIS HIS HIS HIS HIS HIS SEQRES 34 A 433 HIS HIS HIS HIS HET OLA A 501 53 HET OLA A 502 53 HET OLA A 503 31 HET OLA A 504 53 HET OLA A 505 40 HET NA A 506 1 HET ZMA A 507 40 HET CLR A 508 74 HET CLR A 509 74 HET CLR A 510 74 HETNAM OLA OLEIC ACID HETNAM NA SODIUM ION HETNAM ZMA 4-{2-[(7-AMINO-2-FURAN-2-YL[1,2,4]TRIAZOLO[1,5-A][1,3, HETNAM 2 ZMA 5]TRIAZIN-5-YL)AMINO]ETHYL}PHENOL HETNAM CLR CHOLESTEROL FORMUL 2 OLA 5(C18 H34 O2) FORMUL 7 NA NA 1+ FORMUL 8 ZMA C16 H15 N7 O2 FORMUL 9 CLR 3(C27 H46 O) FORMUL 12 HOH *59(H2 O) HELIX 1 AA1 PRO A 10 ASN A 43 1 34 HELIX 2 AA2 SER A 44 GLN A 47 5 4 HELIX 3 AA3 ASN A 48 LEU A 67 1 20 HELIX 4 AA4 LEU A 67 THR A 77 1 11 HELIX 5 AA5 CYS A 83 ILE A 117 1 35 HELIX 6 AA6 ILE A 117 VAL A 125 1 9 HELIX 7 AA7 THR A 126 LEU A 146 1 21 HELIX 8 AA8 THR A 147 GLY A 151 5 5 HELIX 9 AA9 LYS A 159 GLY A 167 1 9 HELIX 10 AB1 LEU A 176 VAL A 181 1 6 HELIX 11 AB2 PRO A 182 PHE A 189 1 8 HELIX 12 AB3 ASN A 190 VAL A 195 1 6 HELIX 13 AB4 VAL A 195 LYS A 236 1 42 HELIX 14 AB5 ASN A 239 ALA A 260 1 22 HELIX 15 AB6 GLY A 281 GLU A 298 1 18 HELIX 16 AB7 LYS A 300 TYR A 318 1 19 HELIX 17 AB8 TYR A 318 CYS A 364 1 47 HELIX 18 AB9 PRO A 371 ILE A 397 1 27 HELIX 19 AC1 ILE A 397 ARG A 409 1 13 SHEET 1 AA1 2 CYS A 80 ALA A 82 0 SHEET 2 AA1 2 GLN A 172 ALA A 174 -1 O VAL A 173 N ALA A 81 SSBOND 1 CYS A 80 CYS A 168 1555 1555 1.99 SSBOND 2 CYS A 83 CYS A 155 1555 1555 1.97 SSBOND 3 CYS A 86 CYS A 175 1555 1555 1.97 SSBOND 4 CYS A 364 CYS A 367 1555 1555 2.04 LINK OD1 ASP A 61 NA NA A 506 1555 1555 2.44 LINK OG SER A 100 NA NA A 506 1555 1555 2.55 LINK NA NA A 506 O HOH A 610 1555 1555 2.59 LINK NA NA A 506 O HOH A 637 1555 1555 2.13 SITE 1 AC1 5 PHE A 71 THR A 74 OLA A 502 CLR A 508 SITE 2 AC1 5 CLR A 509 SITE 1 AC2 2 OLA A 501 CLR A 509 SITE 1 AC3 3 PHE A 363 CLR A 508 CLR A 509 SITE 1 AC4 6 TYR A 52 VAL A 55 LEU A 67 PHE A 88 SITE 2 AC4 6 TRP A 138 CLR A 508 SITE 1 AC5 2 ILE A 73 THR A 74 SITE 1 AC6 4 ASP A 61 SER A 100 HOH A 610 HOH A 637 SITE 1 AC7 12 LEU A 94 PHE A 177 GLU A 178 MET A 186 SITE 2 AC7 12 TRP A 351 LEU A 354 HIS A 355 ASN A 358 SITE 3 AC7 12 MET A 375 HOH A 631 HOH A 643 HOH A 645 SITE 1 AC8 7 ALA A 81 ALA A 82 ILE A 89 OLA A 501 SITE 2 AC8 7 OLA A 503 OLA A 504 CLR A 509 SITE 1 AC9 7 CYS A 359 PHE A 360 OLA A 501 OLA A 502 SITE 2 AC9 7 OLA A 503 CLR A 508 HOH A 626 SITE 1 AD1 2 CYS A 367 SER A 368 CRYST1 39.890 179.150 141.200 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025069 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005582 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007082 0.00000