HEADER SIGNALING PROTEIN 05-APR-17 5NM4
TITLE A2A ADENOSINE RECEPTOR ROOM-TEMPERATURE STRUCTURE DETERMINED BY SERIAL
TITLE 2 FEMTOSECOND CRYSTALLOGRAPHY
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ADENOSINE RECEPTOR A2A,SOLUBLE CYTOCHROME B562,ADENOSINE
COMPND 3 RECEPTOR A2A;
COMPND 4 CHAIN: A;
COMPND 5 SYNONYM: CYTOCHROME B-562;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ESCHERICHIA COLI;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606, 562;
SOURCE 5 GENE: ADORA2A, ADORA2, CYBC;
SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI;
SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111
KEYWDS ROOM-TEMPERATURE, SERIAL CRYSTALLOGRAPHY, SIGNALING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR T.WEINERT,R.CHENG,D.JAMES,D.GASHI,P.NOGLY,K.JAEGER,M.HENNIG,
AUTHOR 2 J.STANDFUSS
REVDAT 4 06-NOV-24 5NM4 1 REMARK
REVDAT 3 14-NOV-18 5NM4 1 REMARK
REVDAT 2 24-JAN-18 5NM4 1 REMARK
REVDAT 1 27-SEP-17 5NM4 0
JRNL AUTH T.WEINERT,N.OLIERIC,R.CHENG,S.BRUNLE,D.JAMES,D.OZEROV,
JRNL AUTH 2 D.GASHI,L.VERA,M.MARSH,K.JAEGER,F.DWORKOWSKI,E.PANEPUCCI,
JRNL AUTH 3 S.BASU,P.SKOPINTSEV,A.S.DORE,T.GENG,R.M.COOKE,M.LIANG,
JRNL AUTH 4 A.E.PROTA,V.PANNEELS,P.NOGLY,U.ERMLER,G.SCHERTLER,M.HENNIG,
JRNL AUTH 5 M.O.STEINMETZ,M.WANG,J.STANDFUSS
JRNL TITL SERIAL MILLISECOND CRYSTALLOGRAPHY FOR ROUTINE
JRNL TITL 2 ROOM-TEMPERATURE STRUCTURE DETERMINATION AT SYNCHROTRONS.
JRNL REF NAT COMMUN V. 8 542 2017
JRNL REFN ESSN 2041-1723
JRNL PMID 28912485
JRNL DOI 10.1038/S41467-017-00630-4
REMARK 2
REMARK 2 RESOLUTION. 1.70 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.59
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330
REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7
REMARK 3 NUMBER OF REFLECTIONS : 53302
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.213
REMARK 3 R VALUE (WORKING SET) : 0.212
REMARK 3 FREE R VALUE : 0.235
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890
REMARK 3 FREE R VALUE TEST SET COUNT : 2606
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 19.5881 - 4.5187 1.00 3035 138 0.2437 0.2467
REMARK 3 2 4.5187 - 3.5938 1.00 2905 132 0.1946 0.2259
REMARK 3 3 3.5938 - 3.1417 1.00 2858 165 0.1761 0.2115
REMARK 3 4 3.1417 - 2.8554 1.00 2812 140 0.1713 0.1915
REMARK 3 5 2.8554 - 2.6512 1.00 2848 142 0.1692 0.1894
REMARK 3 6 2.6512 - 2.4952 1.00 2795 161 0.1729 0.2267
REMARK 3 7 2.4952 - 2.3705 1.00 2821 155 0.1911 0.2118
REMARK 3 8 2.3705 - 2.2675 1.00 2821 144 0.1914 0.2406
REMARK 3 9 2.2675 - 2.1803 1.00 2786 153 0.2155 0.2327
REMARK 3 10 2.1803 - 2.1052 1.00 2768 140 0.2260 0.2705
REMARK 3 11 2.1052 - 2.0394 1.00 2818 138 0.2625 0.3054
REMARK 3 12 2.0394 - 1.9812 1.00 2741 163 0.2838 0.3058
REMARK 3 13 1.9812 - 1.9291 0.99 2809 119 0.3186 0.3608
REMARK 3 14 1.9291 - 1.8820 0.98 2729 143 0.3385 0.3418
REMARK 3 15 1.8820 - 1.8393 0.96 2659 136 0.3593 0.3715
REMARK 3 16 1.8393 - 1.8002 0.93 2564 131 0.3700 0.3919
REMARK 3 17 1.8002 - 1.7642 0.87 2416 125 0.3941 0.4032
REMARK 3 18 1.7642 - 1.7309 0.77 2129 107 0.4120 0.3705
REMARK 3 19 1.7309 - 1.7000 0.49 1382 74 0.4395 0.5123
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.080
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.013 3183
REMARK 3 ANGLE : 1.139 4362
REMARK 3 CHIRALITY : 0.057 529
REMARK 3 PLANARITY : 0.009 527
REMARK 3 DIHEDRAL : 14.649 1919
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 195 )
REMARK 3 ORIGIN FOR THE GROUP (A): 6.3064 85.9613 49.9518
REMARK 3 T TENSOR
REMARK 3 T11: 0.3939 T22: 0.3953
REMARK 3 T33: 0.2856 T12: -0.0084
REMARK 3 T13: 0.0106 T23: -0.0181
REMARK 3 L TENSOR
REMARK 3 L11: 1.2877 L22: 2.1161
REMARK 3 L33: 2.0172 L12: -0.1390
REMARK 3 L13: 0.2396 L23: -0.3973
REMARK 3 S TENSOR
REMARK 3 S11: 0.0149 S12: 0.0176 S13: -0.0694
REMARK 3 S21: -0.0129 S22: -0.0176 S23: -0.1010
REMARK 3 S31: 0.1441 S32: 0.1444 S33: 0.0138
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 196 THROUGH 235 )
REMARK 3 ORIGIN FOR THE GROUP (A): -17.7807 57.0558 51.0262
REMARK 3 T TENSOR
REMARK 3 T11: 0.7304 T22: 0.5137
REMARK 3 T33: 0.9807 T12: -0.0572
REMARK 3 T13: -0.0520 T23: -0.0611
REMARK 3 L TENSOR
REMARK 3 L11: 5.4264 L22: 9.1703
REMARK 3 L33: 1.0205 L12: 7.0515
REMARK 3 L13: -1.9915 L23: -2.5120
REMARK 3 S TENSOR
REMARK 3 S11: 0.0164 S12: 0.2404 S13: -0.7768
REMARK 3 S21: 0.0724 S22: 0.1078 S23: 0.5042
REMARK 3 S31: 0.3662 S32: -0.1089 S33: -0.3140
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 236 THROUGH 318 )
REMARK 3 ORIGIN FOR THE GROUP (A): -21.5906 32.3198 49.2025
REMARK 3 T TENSOR
REMARK 3 T11: 0.6695 T22: 0.4527
REMARK 3 T33: 1.1100 T12: -0.0779
REMARK 3 T13: -0.0802 T23: 0.0940
REMARK 3 L TENSOR
REMARK 3 L11: 5.2139 L22: 2.6659
REMARK 3 L33: 6.7576 L12: -2.5115
REMARK 3 L13: 1.3321 L23: 1.4497
REMARK 3 S TENSOR
REMARK 3 S11: 0.3337 S12: 0.1223 S13: -0.0949
REMARK 3 S21: 0.8857 S22: 0.0775 S23: 0.0852
REMARK 3 S31: 0.0138 S32: -0.0547 S33: -0.1001
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 319 THROUGH 409 )
REMARK 3 ORIGIN FOR THE GROUP (A): -3.2604 77.3607 58.7467
REMARK 3 T TENSOR
REMARK 3 T11: 0.5939 T22: 0.4582
REMARK 3 T33: 0.3985 T12: -0.0415
REMARK 3 T13: 0.0556 T23: 0.0140
REMARK 3 L TENSOR
REMARK 3 L11: 1.5016 L22: 2.4076
REMARK 3 L33: 1.2482 L12: -0.1923
REMARK 3 L13: 0.3278 L23: 0.2810
REMARK 3 S TENSOR
REMARK 3 S11: 0.0337 S12: -0.1506 S13: -0.2919
REMARK 3 S21: 0.3780 S22: -0.0524 S23: 0.1352
REMARK 3 S31: 0.4154 S32: -0.0118 S33: 0.0259
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5NM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-APR-17.
REMARK 100 THE DEPOSITION ID IS D_1200004257.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 14-JUL-16
REMARK 200 TEMPERATURE (KELVIN) : 293
REMARK 200 PH : 5.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER
REMARK 200 BEAMLINE : CXI
REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE CXI
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.3
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : CS-PAD CXI-2
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL
REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56793
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700
REMARK 200 RESOLUTION RANGE LOW (A) : 20.200
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7
REMARK 200 DATA REDUNDANCY : 23.30
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 2.9300
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76
REMARK 200 COMPLETENESS FOR SHELL (%) : 53.6
REMARK 200 DATA REDUNDANCY IN SHELL : 3.00
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.440
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD
REMARK 200 SOFTWARE USED: PHENIX
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 54.41
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE PH 5.0, 0.05M
REMARK 280 SODIUM THIOCYANATE, 28-34% PEG400, 5 MM ZM241385, 2% (V/V) 1,6-
REMARK 280 HEXANEDIOL, LIPIDIC CUBIC PHASE, TEMPERATURE 291K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -X,Y,-Z+1/2
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.60000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.60000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 19.94500
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 89.57500
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 19.94500
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 89.57500
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.60000
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 19.94500
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 89.57500
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.60000
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 19.94500
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 89.57500
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 5080 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 19480 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 19.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ASP A 1
REMARK 465 TYR A 2
REMARK 465 LYS A 3
REMARK 465 ASP A 4
REMARK 465 ASP A 5
REMARK 465 ASP A 6
REMARK 465 ASP A 7
REMARK 465 GLY A 8
REMARK 465 THR A 261
REMARK 465 PRO A 262
REMARK 465 PRO A 263
REMARK 465 LYS A 264
REMARK 465 LEU A 265
REMARK 465 GLU A 266
REMARK 465 ASP A 267
REMARK 465 LYS A 268
REMARK 465 SER A 269
REMARK 465 PRO A 270
REMARK 465 ASP A 271
REMARK 465 SER A 272
REMARK 465 PRO A 273
REMARK 465 GLU A 274
REMARK 465 MET A 275
REMARK 465 LYS A 276
REMARK 465 ASP A 277
REMARK 465 PHE A 278
REMARK 465 ARG A 279
REMARK 465 SER A 410
REMARK 465 HIS A 411
REMARK 465 VAL A 412
REMARK 465 LEU A 413
REMARK 465 ARG A 414
REMARK 465 GLN A 415
REMARK 465 GLN A 416
REMARK 465 GLU A 417
REMARK 465 PRO A 418
REMARK 465 PHE A 419
REMARK 465 LYS A 420
REMARK 465 ALA A 421
REMARK 465 ALA A 422
REMARK 465 ALA A 423
REMARK 465 HIS A 424
REMARK 465 HIS A 425
REMARK 465 HIS A 426
REMARK 465 HIS A 427
REMARK 465 HIS A 428
REMARK 465 HIS A 429
REMARK 465 HIS A 430
REMARK 465 HIS A 431
REMARK 465 HIS A 432
REMARK 465 HIS A 433
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A 120 CG CD NE CZ NH1 NH2
REMARK 470 LEU A 124 CG CD1 CD2
REMARK 470 GLN A 157 CG CD OE1 NE2
REMARK 470 GLU A 170 CG CD OE1 OE2
REMARK 470 GLU A 221 CG CD OE1 OE2
REMARK 470 ASN A 223 CG OD1 ND2
REMARK 470 GLU A 225 CG CD OE1 OE2
REMARK 470 ASP A 229 CG OD1 OD2
REMARK 470 ASP A 238 CG OD1 OD2
REMARK 470 ASN A 239 CG OD1 ND2
REMARK 470 GLN A 242 CG CD OE1 NE2
REMARK 470 LYS A 244 CG CD CE NZ
REMARK 470 HIS A 280 CG ND1 CD2 CE1 NE2
REMARK 470 LEU A 293 CG CD1 CD2
REMARK 470 LYS A 294 CG CD CE NZ
REMARK 470 ASN A 297 CG OD1 ND2
REMARK 470 GLU A 298 CG CD OE1 OE2
REMARK 470 GLN A 310 CG CD OE1 NE2
REMARK 470 LYS A 312 CG CD CE NZ
REMARK 470 LYS A 332 CG CD CE NZ
REMARK 470 LYS A 338 CG CD CE NZ
REMARK 470 ARG A 398 CG CD NE CZ NH1 NH2
REMARK 470 ARG A 405 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 406 CG CD CE NZ
REMARK 470 ARG A 409 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OD1 ASP A 245 HZ3 LYS A 249 1.55
REMARK 500 O GLY A 78 HE22 GLN A 166 1.58
REMARK 500 O GLY A 171 O HOH A 601 2.11
REMARK 500 NE2 GLN A 320 OE2 GLU A 324 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 67 -50.55 -122.01
REMARK 500 ALA A 237 92.07 -24.24
REMARK 500 ASP A 238 -118.61 -100.45
REMARK 500 LYS A 300 75.73 -100.57
REMARK 500 TYR A 318 -53.11 -133.83
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 OLA A 503
REMARK 610 OLA A 505
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 NA A 506 NA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 61 OD1
REMARK 620 2 SER A 100 OG 125.1
REMARK 620 3 HOH A 610 O 101.0 120.4
REMARK 620 4 HOH A 637 O 83.7 126.5 90.3
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 503
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 504
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 505
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 506
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZMA A 507
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 508
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 509
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 510
DBREF 5NM4 A 11 217 UNP P29274 AA2AR_HUMAN 2 208
DBREF 5NM4 A 218 322 UNP P0ABE7 C562_ECOLX 23 127
DBREF 5NM4 A 324 422 UNP P29274 AA2AR_HUMAN 219 317
SEQADV 5NM4 ASP A 1 UNP P29274 EXPRESSION TAG
SEQADV 5NM4 TYR A 2 UNP P29274 EXPRESSION TAG
SEQADV 5NM4 LYS A 3 UNP P29274 EXPRESSION TAG
SEQADV 5NM4 ASP A 4 UNP P29274 EXPRESSION TAG
SEQADV 5NM4 ASP A 5 UNP P29274 EXPRESSION TAG
SEQADV 5NM4 ASP A 6 UNP P29274 EXPRESSION TAG
SEQADV 5NM4 ASP A 7 UNP P29274 EXPRESSION TAG
SEQADV 5NM4 GLY A 8 UNP P29274 EXPRESSION TAG
SEQADV 5NM4 ALA A 9 UNP P29274 EXPRESSION TAG
SEQADV 5NM4 PRO A 10 UNP P29274 EXPRESSION TAG
SEQADV 5NM4 LEU A 63 UNP P29274 ALA 54 ENGINEERED MUTATION
SEQADV 5NM4 ALA A 97 UNP P29274 THR 88 ENGINEERED MUTATION
SEQADV 5NM4 ALA A 116 UNP P29274 ARG 107 ENGINEERED MUTATION
SEQADV 5NM4 ALA A 131 UNP P29274 LYS 122 ENGINEERED MUTATION
SEQADV 5NM4 ALA A 163 UNP P29274 ASN 154 ENGINEERED MUTATION
SEQADV 5NM4 ALA A 211 UNP P29274 LEU 202 ENGINEERED MUTATION
SEQADV 5NM4 TRP A 224 UNP P0ABE7 MET 29 CONFLICT
SEQADV 5NM4 ILE A 319 UNP P0ABE7 HIS 124 CONFLICT
SEQADV 5NM4 LEU A 323 UNP P0ABE7 LINKER
SEQADV 5NM4 ALA A 340 UNP P29274 LEU 235 ENGINEERED MUTATION
SEQADV 5NM4 ALA A 344 UNP P29274 VAL 239 ENGINEERED MUTATION
SEQADV 5NM4 ALA A 382 UNP P29274 SER 277 ENGINEERED MUTATION
SEQADV 5NM4 ALA A 423 UNP P29274 EXPRESSION TAG
SEQADV 5NM4 HIS A 424 UNP P29274 EXPRESSION TAG
SEQADV 5NM4 HIS A 425 UNP P29274 EXPRESSION TAG
SEQADV 5NM4 HIS A 426 UNP P29274 EXPRESSION TAG
SEQADV 5NM4 HIS A 427 UNP P29274 EXPRESSION TAG
SEQADV 5NM4 HIS A 428 UNP P29274 EXPRESSION TAG
SEQADV 5NM4 HIS A 429 UNP P29274 EXPRESSION TAG
SEQADV 5NM4 HIS A 430 UNP P29274 EXPRESSION TAG
SEQADV 5NM4 HIS A 431 UNP P29274 EXPRESSION TAG
SEQADV 5NM4 HIS A 432 UNP P29274 EXPRESSION TAG
SEQADV 5NM4 HIS A 433 UNP P29274 EXPRESSION TAG
SEQRES 1 A 433 ASP TYR LYS ASP ASP ASP ASP GLY ALA PRO PRO ILE MET
SEQRES 2 A 433 GLY SER SER VAL TYR ILE THR VAL GLU LEU ALA ILE ALA
SEQRES 3 A 433 VAL LEU ALA ILE LEU GLY ASN VAL LEU VAL CYS TRP ALA
SEQRES 4 A 433 VAL TRP LEU ASN SER ASN LEU GLN ASN VAL THR ASN TYR
SEQRES 5 A 433 PHE VAL VAL SER LEU ALA ALA ALA ASP ILE LEU VAL GLY
SEQRES 6 A 433 VAL LEU ALA ILE PRO PHE ALA ILE THR ILE SER THR GLY
SEQRES 7 A 433 PHE CYS ALA ALA CYS HIS GLY CYS LEU PHE ILE ALA CYS
SEQRES 8 A 433 PHE VAL LEU VAL LEU ALA GLN SER SER ILE PHE SER LEU
SEQRES 9 A 433 LEU ALA ILE ALA ILE ASP ARG TYR ILE ALA ILE ALA ILE
SEQRES 10 A 433 PRO LEU ARG TYR ASN GLY LEU VAL THR GLY THR ARG ALA
SEQRES 11 A 433 ALA GLY ILE ILE ALA ILE CYS TRP VAL LEU SER PHE ALA
SEQRES 12 A 433 ILE GLY LEU THR PRO MET LEU GLY TRP ASN ASN CYS GLY
SEQRES 13 A 433 GLN PRO LYS GLU GLY LYS ALA HIS SER GLN GLY CYS GLY
SEQRES 14 A 433 GLU GLY GLN VAL ALA CYS LEU PHE GLU ASP VAL VAL PRO
SEQRES 15 A 433 MET ASN TYR MET VAL TYR PHE ASN PHE PHE ALA CYS VAL
SEQRES 16 A 433 LEU VAL PRO LEU LEU LEU MET LEU GLY VAL TYR LEU ARG
SEQRES 17 A 433 ILE PHE ALA ALA ALA ARG ARG GLN LEU ALA ASP LEU GLU
SEQRES 18 A 433 ASP ASN TRP GLU THR LEU ASN ASP ASN LEU LYS VAL ILE
SEQRES 19 A 433 GLU LYS ALA ASP ASN ALA ALA GLN VAL LYS ASP ALA LEU
SEQRES 20 A 433 THR LYS MET ARG ALA ALA ALA LEU ASP ALA GLN LYS ALA
SEQRES 21 A 433 THR PRO PRO LYS LEU GLU ASP LYS SER PRO ASP SER PRO
SEQRES 22 A 433 GLU MET LYS ASP PHE ARG HIS GLY PHE ASP ILE LEU VAL
SEQRES 23 A 433 GLY GLN ILE ASP ASP ALA LEU LYS LEU ALA ASN GLU GLY
SEQRES 24 A 433 LYS VAL LYS GLU ALA GLN ALA ALA ALA GLU GLN LEU LYS
SEQRES 25 A 433 THR THR ARG ASN ALA TYR ILE GLN LYS TYR LEU GLU ARG
SEQRES 26 A 433 ALA ARG SER THR LEU GLN LYS GLU VAL HIS ALA ALA LYS
SEQRES 27 A 433 SER ALA ALA ILE ILE ALA GLY LEU PHE ALA LEU CYS TRP
SEQRES 28 A 433 LEU PRO LEU HIS ILE ILE ASN CYS PHE THR PHE PHE CYS
SEQRES 29 A 433 PRO ASP CYS SER HIS ALA PRO LEU TRP LEU MET TYR LEU
SEQRES 30 A 433 ALA ILE VAL LEU ALA HIS THR ASN SER VAL VAL ASN PRO
SEQRES 31 A 433 PHE ILE TYR ALA TYR ARG ILE ARG GLU PHE ARG GLN THR
SEQRES 32 A 433 PHE ARG LYS ILE ILE ARG SER HIS VAL LEU ARG GLN GLN
SEQRES 33 A 433 GLU PRO PHE LYS ALA ALA ALA HIS HIS HIS HIS HIS HIS
SEQRES 34 A 433 HIS HIS HIS HIS
HET OLA A 501 53
HET OLA A 502 53
HET OLA A 503 31
HET OLA A 504 53
HET OLA A 505 40
HET NA A 506 1
HET ZMA A 507 40
HET CLR A 508 74
HET CLR A 509 74
HET CLR A 510 74
HETNAM OLA OLEIC ACID
HETNAM NA SODIUM ION
HETNAM ZMA 4-{2-[(7-AMINO-2-FURAN-2-YL[1,2,4]TRIAZOLO[1,5-A][1,3,
HETNAM 2 ZMA 5]TRIAZIN-5-YL)AMINO]ETHYL}PHENOL
HETNAM CLR CHOLESTEROL
FORMUL 2 OLA 5(C18 H34 O2)
FORMUL 7 NA NA 1+
FORMUL 8 ZMA C16 H15 N7 O2
FORMUL 9 CLR 3(C27 H46 O)
FORMUL 12 HOH *59(H2 O)
HELIX 1 AA1 PRO A 10 ASN A 43 1 34
HELIX 2 AA2 SER A 44 GLN A 47 5 4
HELIX 3 AA3 ASN A 48 LEU A 67 1 20
HELIX 4 AA4 LEU A 67 THR A 77 1 11
HELIX 5 AA5 CYS A 83 ILE A 117 1 35
HELIX 6 AA6 ILE A 117 VAL A 125 1 9
HELIX 7 AA7 THR A 126 LEU A 146 1 21
HELIX 8 AA8 THR A 147 GLY A 151 5 5
HELIX 9 AA9 LYS A 159 GLY A 167 1 9
HELIX 10 AB1 LEU A 176 VAL A 181 1 6
HELIX 11 AB2 PRO A 182 PHE A 189 1 8
HELIX 12 AB3 ASN A 190 VAL A 195 1 6
HELIX 13 AB4 VAL A 195 LYS A 236 1 42
HELIX 14 AB5 ASN A 239 ALA A 260 1 22
HELIX 15 AB6 GLY A 281 GLU A 298 1 18
HELIX 16 AB7 LYS A 300 TYR A 318 1 19
HELIX 17 AB8 TYR A 318 CYS A 364 1 47
HELIX 18 AB9 PRO A 371 ILE A 397 1 27
HELIX 19 AC1 ILE A 397 ARG A 409 1 13
SHEET 1 AA1 2 CYS A 80 ALA A 82 0
SHEET 2 AA1 2 GLN A 172 ALA A 174 -1 O VAL A 173 N ALA A 81
SSBOND 1 CYS A 80 CYS A 168 1555 1555 1.99
SSBOND 2 CYS A 83 CYS A 155 1555 1555 1.97
SSBOND 3 CYS A 86 CYS A 175 1555 1555 1.97
SSBOND 4 CYS A 364 CYS A 367 1555 1555 2.04
LINK OD1 ASP A 61 NA NA A 506 1555 1555 2.44
LINK OG SER A 100 NA NA A 506 1555 1555 2.55
LINK NA NA A 506 O HOH A 610 1555 1555 2.59
LINK NA NA A 506 O HOH A 637 1555 1555 2.13
SITE 1 AC1 5 PHE A 71 THR A 74 OLA A 502 CLR A 508
SITE 2 AC1 5 CLR A 509
SITE 1 AC2 2 OLA A 501 CLR A 509
SITE 1 AC3 3 PHE A 363 CLR A 508 CLR A 509
SITE 1 AC4 6 TYR A 52 VAL A 55 LEU A 67 PHE A 88
SITE 2 AC4 6 TRP A 138 CLR A 508
SITE 1 AC5 2 ILE A 73 THR A 74
SITE 1 AC6 4 ASP A 61 SER A 100 HOH A 610 HOH A 637
SITE 1 AC7 12 LEU A 94 PHE A 177 GLU A 178 MET A 186
SITE 2 AC7 12 TRP A 351 LEU A 354 HIS A 355 ASN A 358
SITE 3 AC7 12 MET A 375 HOH A 631 HOH A 643 HOH A 645
SITE 1 AC8 7 ALA A 81 ALA A 82 ILE A 89 OLA A 501
SITE 2 AC8 7 OLA A 503 OLA A 504 CLR A 509
SITE 1 AC9 7 CYS A 359 PHE A 360 OLA A 501 OLA A 502
SITE 2 AC9 7 OLA A 503 CLR A 508 HOH A 626
SITE 1 AD1 2 CYS A 367 SER A 368
CRYST1 39.890 179.150 141.200 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.025069 0.000000 0.000000 0.00000
SCALE2 0.000000 0.005582 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007082 0.00000